Wall clock time and date at job start Mon Mar 30 2020 01:21:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.52999 * 109.47388 * 2 1 4 4 H 1.08997 * 109.47225 * 304.99916 * 3 2 1 5 5 C 1.53005 * 109.47451 * 184.99820 * 3 2 1 6 6 C 1.52994 * 109.47072 * 176.73090 * 5 3 2 7 7 H 1.09000 * 109.47460 * 54.16966 * 6 5 3 8 8 C 1.53007 * 109.46932 * 174.16078 * 6 5 3 9 9 C 1.52995 * 109.47288 * 294.16072 * 6 5 3 10 10 C 1.53005 * 109.47258 * 175.00088 * 9 6 5 11 11 N 1.46506 * 109.47186 * 64.99729 * 3 2 1 12 12 C 1.38853 * 119.99956 * 275.00416 * 11 3 2 13 13 C 1.39568 * 119.84303 * 359.72519 * 12 11 3 14 14 C 1.36335 * 120.15958 * 179.72270 * 13 12 11 15 15 C 1.40883 * 119.83725 * 0.55212 * 14 13 12 16 16 C 1.41140 * 120.15708 * 179.70222 * 15 14 13 17 17 H 1.07997 * 120.00179 * 203.32226 * 16 15 14 18 18 C 1.39862 * 119.99840 * 23.32561 * 16 15 14 19 19 N 1.30906 * 120.00195 * 16.81267 * 18 16 15 20 20 Si 1.86801 * 120.00168 * 196.80889 * 18 16 15 21 21 H 1.48510 * 109.46796 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.47246 * 119.99879 * 20 18 16 23 23 H 1.48501 * 109.47497 * 240.00461 * 20 18 16 24 24 C 1.40885 * 119.69015 * 359.71587 * 15 14 13 25 25 C 1.36342 * 119.83388 * 0.02562 * 24 15 14 26 26 H 1.08997 * 109.47362 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47633 * 300.00356 * 1 2 3 28 28 H 1.09003 * 109.47045 * 60.00195 * 1 2 3 29 29 H 1.08999 * 109.47633 * 239.99644 * 2 1 3 30 30 H 1.09003 * 109.47045 * 119.99805 * 2 1 3 31 31 H 1.09000 * 109.47039 * 56.72684 * 5 3 2 32 32 H 1.09004 * 109.47049 * 296.73133 * 5 3 2 33 33 H 1.09003 * 109.47029 * 63.66093 * 8 6 5 34 34 H 1.08996 * 109.47023 * 303.66466 * 8 6 5 35 35 H 1.08999 * 109.46998 * 183.65892 * 8 6 5 36 36 H 1.09002 * 109.47187 * 295.00094 * 9 6 5 37 37 H 1.09000 * 109.47253 * 55.00475 * 9 6 5 38 38 H 1.09000 * 109.46672 * 60.00031 * 10 9 6 39 39 H 1.09002 * 109.47165 * 180.02562 * 10 9 6 40 40 H 1.08994 * 109.47298 * 300.00361 * 10 9 6 41 41 H 0.97003 * 119.99474 * 95.00187 * 11 3 2 42 42 H 1.08006 * 119.91775 * 359.97401 * 13 12 11 43 43 H 1.08004 * 120.08566 * 180.27345 * 14 13 12 44 44 H 0.97001 * 119.99680 * 179.97438 * 19 18 16 45 45 H 1.08004 * 120.08583 * 179.97438 * 24 15 14 46 46 H 1.07998 * 119.91626 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5648 1.4443 -0.1257 6 6 4.0680 2.8868 -0.2077 7 1 3.6900 3.4525 0.6439 8 6 5.5979 2.8952 -0.1866 9 6 3.5723 3.5269 -1.5059 10 6 3.9693 5.0043 -1.5302 11 7 1.6524 2.0975 1.2518 12 6 0.3982 2.6816 1.3704 13 6 -0.4884 2.6477 0.2930 14 6 -1.7235 3.2142 0.4043 15 6 -2.0996 3.8450 1.6065 16 6 -3.3742 4.4391 1.7269 17 1 -3.5390 5.2213 2.4530 18 6 -4.4239 4.0146 0.9059 19 7 -4.3376 2.8734 0.2704 20 14 -5.9493 5.0761 0.7163 21 1 -5.8004 6.3071 1.5336 22 1 -6.1200 5.4468 -0.7114 23 1 -7.1404 4.3180 1.1767 24 6 -1.1974 3.8803 2.6880 25 6 0.0325 3.3050 2.5643 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8932 -0.5138 0.8900 31 1 3.8557 0.9061 -1.0278 32 1 4.0018 0.9560 0.7454 33 1 5.9763 2.3853 -1.0727 34 1 5.9518 2.3814 0.7071 35 1 5.9555 3.9248 -0.1795 36 1 4.0215 3.0159 -2.3575 37 1 2.4871 3.4414 -1.5619 38 1 5.0545 5.0898 -1.4741 39 1 3.6158 5.4604 -2.4549 40 1 3.5202 5.5153 -0.6786 41 1 2.2719 2.1232 1.9978 42 1 -0.1968 2.1680 -0.6297 43 1 -2.4103 3.1834 -0.4287 44 1 -5.0658 2.5790 -0.2987 45 1 -1.4789 4.3625 3.6125 46 1 0.7254 3.3316 3.3924 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037071385.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:42 Heat of formation + Delta-G solvation = -4.806194 kcal Electronic energy + Delta-G solvation = -21921.014013 eV Core-core repulsion = 19002.164927 eV Total energy + Delta-G solvation = -2918.849086 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -38.90342 -37.16994 -35.24660 -33.37166 -31.52747 -30.64401 -29.39020 -28.81238 -27.54236 -24.71609 -23.81930 -22.68326 -21.76110 -20.55471 -19.79110 -19.01813 -17.17973 -16.30840 -15.45447 -15.08514 -14.89431 -14.39290 -14.22893 -13.65160 -13.62976 -13.33338 -12.68499 -12.65488 -12.36390 -12.21080 -12.04921 -11.95633 -11.88653 -11.63983 -11.41492 -11.15359 -11.04948 -10.94461 -10.79779 -10.69266 -10.49553 -10.46951 -10.32365 -10.14102 -9.98983 -9.62628 -9.18106 -9.13353 -8.42017 -7.37356 -6.58210 -6.28669 -3.97496 2.94083 3.16326 3.18377 3.22857 3.40416 4.08588 4.40239 4.78683 4.81796 4.87838 4.96972 5.28219 5.43778 5.51398 5.53921 5.59708 5.65314 5.65819 5.83180 5.88187 5.89963 5.95901 5.99667 6.05156 6.16157 6.20873 6.29100 6.31657 6.35025 6.38913 6.44969 6.50731 6.53979 6.69339 7.00794 7.02202 7.06515 7.26088 7.41740 7.64767 7.76085 7.93216 8.21197 8.37680 8.58061 8.79166 8.88484 9.11957 9.22031 10.41534 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.021958 B = 0.004426 C = 0.004173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.841769 B = 6325.169594 C = 6707.991916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.135 4.135 3 C 0.160 3.840 4 H 0.074 0.926 5 C -0.120 4.120 6 C -0.090 4.090 7 H 0.077 0.923 8 C -0.147 4.147 9 C -0.120 4.120 10 C -0.151 4.151 11 N -0.751 5.751 12 C 0.098 3.902 13 C -0.163 4.163 14 C -0.128 4.128 15 C 0.072 3.928 16 C -0.465 4.465 17 H 0.071 0.929 18 C 0.074 3.926 19 N -0.809 5.809 20 Si 0.901 3.099 21 H -0.263 1.263 22 H -0.275 1.275 23 H -0.278 1.278 24 C -0.190 4.190 25 C -0.163 4.163 26 H 0.036 0.964 27 H 0.080 0.920 28 H 0.055 0.945 29 H 0.052 0.948 30 H 0.054 0.946 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.050 0.950 34 H 0.050 0.950 35 H 0.053 0.947 36 H 0.055 0.945 37 H 0.068 0.932 38 H 0.050 0.950 39 H 0.049 0.951 40 H 0.055 0.945 41 H 0.381 0.619 42 H 0.096 0.904 43 H 0.120 0.880 44 H 0.274 0.726 45 H 0.088 0.912 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.825 -2.377 -3.591 14.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.175 4.175 3 C 0.053 3.947 4 H 0.092 0.908 5 C -0.158 4.158 6 C -0.109 4.109 7 H 0.095 0.905 8 C -0.204 4.204 9 C -0.157 4.157 10 C -0.209 4.209 11 N -0.386 5.386 12 C 0.001 3.999 13 C -0.185 4.185 14 C -0.148 4.148 15 C 0.069 3.931 16 C -0.496 4.496 17 H 0.089 0.911 18 C -0.141 4.141 19 N -0.436 5.436 20 Si 0.726 3.274 21 H -0.187 1.187 22 H -0.200 1.200 23 H -0.203 1.203 24 C -0.210 4.210 25 C -0.185 4.185 26 H 0.055 0.945 27 H 0.098 0.902 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.087 0.913 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.074 0.926 41 H 0.213 0.787 42 H 0.114 0.886 43 H 0.138 0.862 44 H 0.085 0.915 45 H 0.106 0.894 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 13.645 -2.573 -3.925 14.429 hybrid contribution -0.594 0.288 0.206 0.692 sum 13.051 -2.285 -3.718 13.761 Atomic orbital electron populations 1.22133 0.94853 1.00374 1.03827 1.22067 0.97310 0.97533 1.00568 1.20724 0.92725 0.92172 0.89068 0.90794 1.21902 0.95617 0.96555 1.01735 1.21128 0.94737 0.96141 0.98867 0.90451 1.21886 0.95974 1.01385 1.01170 1.21603 1.01639 0.95549 0.96928 1.21791 1.00792 0.96617 1.01677 1.43924 1.15222 1.65255 1.14192 1.17304 0.86220 1.01160 0.95198 1.20356 0.95363 1.05930 0.96825 1.21015 0.94475 1.00931 0.98364 1.17490 0.92665 0.92397 0.90524 1.19406 0.94090 1.18489 1.17663 0.91102 1.25772 0.99787 0.94211 0.94290 1.69858 1.32395 1.17208 1.24174 0.86389 0.81148 0.81085 0.78763 1.18701 1.20023 1.20329 1.20505 0.95370 1.07195 0.97936 1.19786 0.97640 1.05519 0.95555 0.94523 0.90154 0.92603 0.92895 0.92694 0.91531 0.92091 0.93127 0.93126 0.92773 0.92671 0.91294 0.93080 0.93141 0.92598 0.78656 0.88590 0.86182 0.91512 0.89375 0.89891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 8.22 37.15 0.31 -2.34 16 2 C -0.14 -1.93 5.61 -26.74 -0.15 -2.08 16 3 C 0.16 2.28 2.08 -67.93 -0.14 2.14 16 4 H 0.07 1.17 4.65 -51.93 -0.24 0.93 16 5 C -0.12 -1.37 4.22 -26.73 -0.11 -1.48 16 6 C -0.09 -1.03 2.32 -90.62 -0.21 -1.24 16 7 H 0.08 1.02 7.51 -51.93 -0.39 0.63 16 8 C -0.15 -1.41 8.86 37.16 0.33 -1.08 16 9 C -0.12 -1.41 5.28 -26.73 -0.14 -1.55 16 10 C -0.15 -1.71 9.67 37.16 0.36 -1.35 16 11 N -0.75 -12.40 4.45 -52.03 -0.23 -12.63 16 12 C 0.10 2.05 5.49 -83.69 -0.46 1.59 16 13 C -0.16 -3.67 6.62 -39.77 -0.26 -3.93 16 14 C -0.13 -3.31 8.65 -39.27 -0.34 -3.65 16 15 C 0.07 1.95 5.59 -106.79 -0.60 1.35 16 16 C -0.47 -12.73 9.04 -37.87 -0.34 -13.07 16 17 H 0.07 1.89 7.90 -52.49 -0.41 1.48 16 18 C 0.07 1.92 5.17 -17.34 -0.09 1.83 16 19 N -0.81 -21.48 10.81 55.54 0.60 -20.88 16 20 Si 0.90 19.42 29.59 -169.99 -5.03 14.39 16 21 H -0.26 -5.63 7.11 56.52 0.40 -5.23 16 22 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 23 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 24 C -0.19 -4.72 9.74 -39.26 -0.38 -5.10 16 25 C -0.16 -3.62 9.82 -39.77 -0.39 -4.01 16 26 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.08 1.64 5.40 -51.93 -0.28 1.36 16 28 H 0.06 0.98 6.34 -51.93 -0.33 0.65 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.05 0.50 6.74 -51.93 -0.35 0.15 16 36 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.95 6.32 -51.93 -0.33 0.62 16 38 H 0.05 0.51 6.65 -51.93 -0.35 0.16 16 39 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.38 5.78 8.57 -40.82 -0.35 5.43 16 42 H 0.10 1.99 3.99 -52.48 -0.21 1.78 16 43 H 0.12 3.26 6.02 -52.48 -0.32 2.95 16 44 H 0.27 6.68 8.30 -40.82 -0.34 6.34 16 45 H 0.09 2.09 8.06 -52.48 -0.42 1.67 16 46 H 0.08 1.65 8.06 -52.49 -0.42 1.23 16 LS Contribution 348.46 15.07 5.25 5.25 Total: -1.00 -26.95 348.46 -9.80 -36.75 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: -7.76 Total: 11.11 kcal Atomic # 6 Polarization: -31.35 SS G_CDS: -2.63 Total: -33.98 kcal Atomic # 7 Polarization: -33.88 SS G_CDS: 0.37 Total: -33.52 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -5.03 Total: 14.39 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -26.95 -9.80 -36.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037071385.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.941 kcal (2) G-P(sol) polarization free energy of solvation -26.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds