Wall clock time and date at job start Mon Mar 30 2020 01:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52998 * 109.46903 * 2 1 4 4 H 1.09006 * 109.47160 * 305.00259 * 3 2 1 5 5 C 1.52997 * 109.47204 * 64.99589 * 3 2 1 6 6 C 1.52997 * 109.47178 * 185.00219 * 3 2 1 7 7 C 1.52995 * 109.47142 * 65.57200 * 6 3 2 8 8 H 1.09002 * 109.47277 * 305.87151 * 7 6 3 9 9 C 1.53003 * 109.47159 * 185.87342 * 7 6 3 10 10 C 1.53001 * 109.47165 * 175.17598 * 9 7 6 11 11 N 1.46497 * 109.47407 * 65.87417 * 7 6 3 12 12 C 1.38857 * 120.00119 * 216.73606 * 11 7 6 13 13 C 1.39564 * 119.84262 * 5.49221 * 12 11 7 14 14 C 1.36343 * 120.16116 * 179.71936 * 13 12 11 15 15 C 1.40883 * 119.83516 * 0.55898 * 14 13 12 16 16 C 1.41136 * 120.15285 * 179.69836 * 15 14 13 17 17 H 1.08006 * 119.99428 * 209.01508 * 16 15 14 18 18 C 1.39859 * 120.00343 * 29.01140 * 16 15 14 19 19 N 1.30900 * 119.99780 * 10.53392 * 18 16 15 20 20 Si 1.86798 * 120.00262 * 190.52735 * 18 16 15 21 21 H 1.48502 * 109.46769 * 60.00218 * 20 18 16 22 22 H 1.48500 * 109.47558 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.47231 * 300.00662 * 20 18 16 24 24 C 1.40884 * 119.68919 * 359.71849 * 15 14 13 25 25 C 1.36341 * 119.83708 * 0.02562 * 24 15 14 26 26 H 1.09001 * 109.47001 * 60.00359 * 1 2 3 27 27 H 1.09001 * 109.46484 * 179.97438 * 1 2 3 28 28 H 1.08991 * 109.46805 * 299.99682 * 1 2 3 29 29 H 1.08991 * 109.46805 * 240.00318 * 2 1 3 30 30 H 1.08991 * 109.47167 * 119.99726 * 2 1 3 31 31 H 1.09008 * 109.46845 * 63.16522 * 5 3 2 32 32 H 1.08996 * 109.47574 * 183.16038 * 5 3 2 33 33 H 1.08991 * 109.47561 * 303.16694 * 5 3 2 34 34 H 1.09001 * 109.47039 * 305.57080 * 6 3 2 35 35 H 1.09002 * 109.46909 * 185.57001 * 6 3 2 36 36 H 1.09003 * 109.47155 * 55.17272 * 9 7 6 37 37 H 1.09007 * 109.47046 * 295.17783 * 9 7 6 38 38 H 1.09003 * 109.46685 * 177.72378 * 10 9 7 39 39 H 1.08996 * 109.46896 * 57.72324 * 10 9 7 40 40 H 1.08996 * 109.46773 * 297.72131 * 10 9 7 41 41 H 0.96998 * 120.00096 * 36.73193 * 11 7 6 42 42 H 1.08007 * 119.91841 * 359.97438 * 13 12 11 43 43 H 1.08001 * 120.07979 * 180.27954 * 14 13 12 44 44 H 0.97003 * 120.00068 * 179.97438 * 19 18 16 45 45 H 1.07998 * 120.08184 * 179.97438 * 24 15 14 46 46 H 1.08001 * 119.91626 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 1.6352 2.1266 1.3073 6 6 3.5648 1.4444 -0.1258 7 6 3.9644 0.8869 -1.4934 8 1 3.5058 -0.0917 -1.6349 9 6 5.4868 0.7517 -1.5640 10 6 5.8789 0.0832 -2.8832 11 7 3.5058 1.7978 -2.5451 12 6 3.0386 1.2887 -3.7494 13 6 2.8989 -0.0903 -3.9130 14 6 2.4353 -0.5969 -5.0908 15 6 2.1080 0.2746 -6.1483 16 6 1.6336 -0.2430 -7.3726 17 1 1.8181 0.2918 -8.2926 18 6 0.9246 -1.4484 -7.3944 19 7 0.5217 -1.9911 -6.2735 20 14 0.5524 -2.2837 -9.0233 21 1 1.8255 -2.6037 -9.7176 22 1 -0.2052 -3.5366 -8.7754 23 1 -0.2593 -1.3746 -9.8718 24 6 2.2570 1.6651 -5.9780 25 6 2.7168 2.1580 -4.7928 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3632 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5137 0.8899 31 1 2.1152 1.6214 2.1455 32 1 1.9493 3.1700 1.2839 33 1 0.5527 2.0755 1.4240 34 1 3.9949 0.8230 0.6597 35 1 3.9363 2.4644 -0.0265 36 1 5.8366 0.1431 -0.7301 37 1 5.9424 1.7405 -1.5082 38 1 6.9651 0.0235 -2.9514 39 1 5.4941 0.6708 -3.7166 40 1 5.4567 -0.9210 -2.9210 41 1 3.5285 2.7567 -2.4001 42 1 3.1549 -0.7575 -3.1031 43 1 2.3235 -1.6640 -5.2144 44 1 0.0297 -2.8270 -6.2886 45 1 2.0085 2.3390 -6.7845 46 1 2.8319 3.2238 -4.6610 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037071386.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:44 Heat of formation + Delta-G solvation = -10.548768 kcal Electronic energy + Delta-G solvation = -21959.707846 eV Core-core repulsion = 19040.609743 eV Total energy + Delta-G solvation = -2919.098103 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -38.80623 -37.12008 -35.21649 -33.39072 -31.53776 -30.47989 -29.39416 -28.79554 -27.57568 -24.69475 -23.84735 -22.72099 -21.68523 -20.52953 -19.76776 -19.08994 -17.15763 -16.31955 -15.36002 -15.09639 -14.84630 -14.31308 -14.15003 -13.75140 -13.64686 -13.32335 -12.69461 -12.61016 -12.38899 -12.16505 -12.01894 -11.92889 -11.83087 -11.54915 -11.44329 -11.25231 -10.99016 -10.94234 -10.85438 -10.74135 -10.53639 -10.51028 -10.30241 -10.15147 -9.95450 -9.62772 -9.18454 -9.13072 -8.47680 -7.43130 -6.51269 -6.26738 -4.00526 2.97966 3.15123 3.17495 3.20780 3.39787 4.10745 4.39091 4.81774 4.84952 4.95664 5.04573 5.34658 5.42158 5.51445 5.57362 5.63244 5.67828 5.73664 5.86867 5.88764 5.89060 5.97497 6.03369 6.04402 6.21955 6.25826 6.30085 6.31274 6.32470 6.38888 6.42432 6.52695 6.62717 6.65023 6.80520 6.98459 7.03238 7.25707 7.42422 7.62989 7.75497 7.91363 8.20956 8.36371 8.57375 8.77758 8.87619 9.12850 9.21186 10.47941 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.018874 B = 0.004831 C = 0.004338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.141022 B = 5794.726218 C = 6452.386885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C -0.090 4.090 4 H 0.078 0.922 5 C -0.147 4.147 6 C -0.121 4.121 7 C 0.154 3.846 8 H 0.085 0.915 9 C -0.135 4.135 10 C -0.148 4.148 11 N -0.750 5.750 12 C 0.108 3.892 13 C -0.166 4.166 14 C -0.115 4.115 15 C 0.071 3.929 16 C -0.468 4.468 17 H 0.069 0.931 18 C 0.072 3.928 19 N -0.818 5.818 20 Si 0.904 3.096 21 H -0.267 1.267 22 H -0.281 1.281 23 H -0.269 1.269 24 C -0.182 4.182 25 C -0.168 4.168 26 H 0.056 0.944 27 H 0.050 0.950 28 H 0.049 0.951 29 H 0.068 0.932 30 H 0.053 0.947 31 H 0.049 0.951 32 H 0.048 0.952 33 H 0.054 0.946 34 H 0.064 0.936 35 H 0.059 0.941 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.039 0.961 39 H 0.069 0.931 40 H 0.051 0.949 41 H 0.381 0.619 42 H 0.089 0.911 43 H 0.119 0.881 44 H 0.274 0.726 45 H 0.089 0.911 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.187 3.484 12.360 13.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C -0.108 4.108 4 H 0.096 0.904 5 C -0.204 4.204 6 C -0.159 4.159 7 C 0.047 3.953 8 H 0.102 0.898 9 C -0.174 4.174 10 C -0.206 4.206 11 N -0.384 5.384 12 C 0.011 3.989 13 C -0.187 4.187 14 C -0.135 4.135 15 C 0.068 3.932 16 C -0.500 4.500 17 H 0.087 0.913 18 C -0.141 4.141 19 N -0.447 5.447 20 Si 0.730 3.270 21 H -0.192 1.192 22 H -0.206 1.206 23 H -0.194 1.194 24 C -0.202 4.202 25 C -0.190 4.190 26 H 0.076 0.924 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.087 0.913 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.058 0.942 39 H 0.088 0.912 40 H 0.070 0.930 41 H 0.214 0.786 42 H 0.107 0.893 43 H 0.136 0.864 44 H 0.085 0.915 45 H 0.107 0.893 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.073 3.096 12.505 13.511 hybrid contribution -0.263 -0.054 -0.668 0.720 sum 3.810 3.042 11.837 12.801 Atomic orbital electron populations 1.21792 0.96151 1.01368 1.01569 1.21591 0.95869 0.96453 1.01739 1.21111 0.95205 0.96478 0.98025 0.90365 1.21888 1.01202 0.99896 0.97447 1.21939 0.95774 1.01034 0.97153 1.20827 0.92578 0.95260 0.86639 0.89757 1.22030 0.97318 1.00227 0.97821 1.21756 0.99447 1.01007 0.98347 1.43912 1.74419 1.06195 1.13901 1.17321 1.03084 0.92433 0.86068 1.20127 1.07933 0.92316 0.98357 1.20988 0.99475 1.00023 0.93022 1.17472 0.91801 0.90320 0.93620 1.19311 1.31583 1.04923 0.94195 0.91275 1.25738 0.94247 0.96767 0.97356 1.69804 1.29973 1.17536 1.27373 0.86447 0.79051 0.78712 0.82814 1.19237 1.20650 1.19393 1.20579 1.08085 0.95221 0.96304 1.19808 1.08657 0.96208 0.94301 0.92449 0.93097 0.93170 0.91298 0.92810 0.93221 0.93238 0.92661 0.91737 0.92275 0.92684 0.92707 0.94176 0.91162 0.93004 0.78645 0.89335 0.86354 0.91493 0.89282 0.89807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.67 37.16 0.36 -1.60 16 2 C -0.12 -1.55 5.28 -26.73 -0.14 -1.69 16 3 C -0.09 -1.11 2.34 -90.62 -0.21 -1.32 16 4 H 0.08 1.14 7.64 -51.93 -0.40 0.75 16 5 C -0.15 -1.54 9.02 37.16 0.34 -1.20 16 6 C -0.12 -1.42 4.28 -26.74 -0.11 -1.53 16 7 C 0.15 2.17 2.05 -67.93 -0.14 2.03 16 8 H 0.08 1.35 3.75 -51.93 -0.19 1.15 16 9 C -0.13 -1.79 5.61 -26.73 -0.15 -1.94 16 10 C -0.15 -2.26 8.77 37.16 0.33 -1.93 16 11 N -0.75 -12.24 4.26 -52.04 -0.22 -12.46 16 12 C 0.11 2.24 5.37 -83.69 -0.45 1.79 16 13 C -0.17 -3.72 7.97 -39.77 -0.32 -4.04 16 14 C -0.12 -2.98 8.60 -39.26 -0.34 -3.31 16 15 C 0.07 1.91 5.55 -106.80 -0.59 1.31 16 16 C -0.47 -12.83 9.04 -37.88 -0.34 -13.17 16 17 H 0.07 1.83 7.87 -52.48 -0.41 1.42 16 18 C 0.07 1.89 5.25 -17.34 -0.09 1.80 16 19 N -0.82 -21.95 10.83 55.54 0.60 -21.35 16 20 Si 0.90 19.60 29.57 -169.99 -5.03 14.57 16 21 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 22 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 23 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 24 C -0.18 -4.49 9.74 -39.26 -0.38 -4.87 16 25 C -0.17 -3.70 9.82 -39.77 -0.39 -4.09 16 26 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.05 0.56 6.50 -51.93 -0.34 0.23 16 29 H 0.07 1.04 6.26 -51.93 -0.32 0.72 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.48 8.14 -51.92 -0.42 0.05 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.05 0.57 6.42 -51.93 -0.33 0.24 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.05 0.70 8.14 -51.92 -0.42 0.28 16 38 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.07 1.26 6.37 -51.93 -0.33 0.93 16 40 H 0.05 0.82 7.78 -51.93 -0.40 0.41 16 41 H 0.38 5.73 8.73 -40.82 -0.36 5.38 16 42 H 0.09 1.84 5.50 -52.48 -0.29 1.56 16 43 H 0.12 3.22 6.22 -52.49 -0.33 2.89 16 44 H 0.27 6.81 8.30 -40.82 -0.34 6.47 16 45 H 0.09 2.11 8.06 -52.49 -0.42 1.68 16 46 H 0.08 1.65 8.06 -52.49 -0.42 1.23 16 LS Contribution 353.21 15.07 5.32 5.32 Total: -1.00 -26.94 353.21 -9.88 -36.81 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: -7.91 Total: 10.87 kcal Atomic # 6 Polarization: -31.12 SS G_CDS: -2.64 Total: -33.76 kcal Atomic # 7 Polarization: -34.19 SS G_CDS: 0.38 Total: -33.81 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -5.03 Total: 14.57 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -26.94 -9.88 -36.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037071386.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.266 kcal (2) G-P(sol) polarization free energy of solvation -26.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds