Wall clock time and date at job start Mon Mar 30 2020 01:21:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52998 * 109.46903 * 2 1 4 4 H 1.09006 * 109.47160 * 305.00259 * 3 2 1 5 5 C 1.52997 * 109.47204 * 64.99589 * 3 2 1 6 6 C 1.52997 * 109.47178 * 185.00219 * 3 2 1 7 7 C 1.52995 * 109.47142 * 65.57200 * 6 3 2 8 8 H 1.09002 * 109.47277 * 305.87151 * 7 6 3 9 9 C 1.53003 * 109.47159 * 185.87342 * 7 6 3 10 10 C 1.53001 * 109.47165 * 175.17598 * 9 7 6 11 11 N 1.46497 * 109.47407 * 65.87417 * 7 6 3 12 12 C 1.38857 * 120.00119 * 216.73606 * 11 7 6 13 13 C 1.39564 * 119.84262 * 5.49221 * 12 11 7 14 14 C 1.36343 * 120.16116 * 179.71936 * 13 12 11 15 15 C 1.40883 * 119.83516 * 0.55898 * 14 13 12 16 16 C 1.41136 * 120.15285 * 179.69836 * 15 14 13 17 17 H 1.08006 * 119.99428 * 209.01508 * 16 15 14 18 18 C 1.39859 * 120.00343 * 29.01140 * 16 15 14 19 19 N 1.30900 * 119.99780 * 10.53392 * 18 16 15 20 20 Si 1.86798 * 120.00262 * 190.52735 * 18 16 15 21 21 H 1.48502 * 109.46769 * 60.00218 * 20 18 16 22 22 H 1.48500 * 109.47558 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.47231 * 300.00662 * 20 18 16 24 24 C 1.40884 * 119.68919 * 359.71849 * 15 14 13 25 25 C 1.36341 * 119.83708 * 0.02562 * 24 15 14 26 26 H 1.09001 * 109.47001 * 60.00359 * 1 2 3 27 27 H 1.09001 * 109.46484 * 179.97438 * 1 2 3 28 28 H 1.08991 * 109.46805 * 299.99682 * 1 2 3 29 29 H 1.08991 * 109.46805 * 240.00318 * 2 1 3 30 30 H 1.08991 * 109.47167 * 119.99726 * 2 1 3 31 31 H 1.09008 * 109.46845 * 63.16522 * 5 3 2 32 32 H 1.08996 * 109.47574 * 183.16038 * 5 3 2 33 33 H 1.08991 * 109.47561 * 303.16694 * 5 3 2 34 34 H 1.09001 * 109.47039 * 305.57080 * 6 3 2 35 35 H 1.09002 * 109.46909 * 185.57001 * 6 3 2 36 36 H 1.09003 * 109.47155 * 55.17272 * 9 7 6 37 37 H 1.09007 * 109.47046 * 295.17783 * 9 7 6 38 38 H 1.09003 * 109.46685 * 177.72378 * 10 9 7 39 39 H 1.08996 * 109.46896 * 57.72324 * 10 9 7 40 40 H 1.08996 * 109.46773 * 297.72131 * 10 9 7 41 41 H 0.96998 * 120.00096 * 36.73193 * 11 7 6 42 42 H 1.08007 * 119.91841 * 359.97438 * 13 12 11 43 43 H 1.08001 * 120.07979 * 180.27954 * 14 13 12 44 44 H 0.97003 * 120.00068 * 179.97438 * 19 18 16 45 45 H 1.07998 * 120.08184 * 179.97438 * 24 15 14 46 46 H 1.08001 * 119.91626 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 1.6352 2.1266 1.3073 6 6 3.5648 1.4444 -0.1258 7 6 3.9644 0.8869 -1.4934 8 1 3.5058 -0.0917 -1.6349 9 6 5.4868 0.7517 -1.5640 10 6 5.8789 0.0832 -2.8832 11 7 3.5058 1.7978 -2.5451 12 6 3.0386 1.2887 -3.7494 13 6 2.8989 -0.0903 -3.9130 14 6 2.4353 -0.5969 -5.0908 15 6 2.1080 0.2746 -6.1483 16 6 1.6336 -0.2430 -7.3726 17 1 1.8181 0.2918 -8.2926 18 6 0.9246 -1.4484 -7.3944 19 7 0.5217 -1.9911 -6.2735 20 14 0.5524 -2.2837 -9.0233 21 1 1.8255 -2.6037 -9.7176 22 1 -0.2052 -3.5366 -8.7754 23 1 -0.2593 -1.3746 -9.8718 24 6 2.2570 1.6651 -5.9780 25 6 2.7168 2.1580 -4.7928 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3632 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5137 0.8899 31 1 2.1152 1.6214 2.1455 32 1 1.9493 3.1700 1.2839 33 1 0.5527 2.0755 1.4240 34 1 3.9949 0.8230 0.6597 35 1 3.9363 2.4644 -0.0265 36 1 5.8366 0.1431 -0.7301 37 1 5.9424 1.7405 -1.5082 38 1 6.9651 0.0235 -2.9514 39 1 5.4941 0.6708 -3.7166 40 1 5.4567 -0.9210 -2.9210 41 1 3.5285 2.7567 -2.4001 42 1 3.1549 -0.7575 -3.1031 43 1 2.3235 -1.6640 -5.2144 44 1 0.0297 -2.8270 -6.2886 45 1 2.0085 2.3390 -6.7845 46 1 2.8319 3.2238 -4.6610 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037071386.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:43 Heat of formation + Delta-G solvation = -22.361520 kcal Electronic energy + Delta-G solvation = -21960.220085 eV Core-core repulsion = 19040.609743 eV Total energy + Delta-G solvation = -2919.610342 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.26378 -38.60030 -36.54763 -35.14219 -33.08543 -31.64304 -31.22098 -30.24884 -28.93437 -26.21807 -25.23289 -23.86769 -23.25961 -22.29723 -20.98549 -20.35711 -19.10948 -17.92547 -16.86073 -16.61542 -16.05768 -15.64892 -15.49005 -15.23755 -14.79796 -14.66920 -14.41728 -14.04948 -13.87805 -13.53665 -13.42189 -13.32656 -13.04677 -12.84518 -12.73716 -12.71297 -12.65826 -12.36984 -12.30202 -12.01575 -11.92724 -11.76020 -11.52384 -11.37969 -11.24966 -11.14361 -10.98668 -10.87810 -10.18184 -9.33273 -8.44679 -8.01963 -5.99189 1.16319 1.24749 1.39411 1.50367 1.61217 2.29265 2.91751 3.00922 3.77989 3.88380 3.95662 4.06970 4.24454 4.30532 4.40536 4.51060 4.55342 4.58471 4.65457 4.71470 4.77098 4.85143 4.92946 4.94952 5.04307 5.07636 5.12298 5.13206 5.18004 5.22680 5.26527 5.29265 5.31406 5.37779 5.43513 5.50575 5.55132 5.59191 5.65111 5.77945 5.88445 6.03901 6.23747 6.46017 6.74537 6.96171 7.13696 7.23011 7.41500 8.55888 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.018874 B = 0.004831 C = 0.004338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.141022 B = 5794.726218 C = 6452.386885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.119 4.119 3 C -0.088 4.088 4 H 0.051 0.949 5 C -0.142 4.142 6 C -0.111 4.111 7 C 0.149 3.851 8 H 0.065 0.935 9 C -0.128 4.128 10 C -0.147 4.147 11 N -0.738 5.738 12 C 0.139 3.861 13 C -0.169 4.169 14 C -0.132 4.132 15 C 0.029 3.971 16 C -0.507 4.507 17 H 0.063 0.937 18 C 0.029 3.971 19 N -0.852 5.852 20 Si 0.975 3.025 21 H -0.263 1.263 22 H -0.271 1.271 23 H -0.264 1.264 24 C -0.190 4.190 25 C -0.178 4.178 26 H 0.032 0.968 27 H 0.049 0.951 28 H 0.070 0.930 29 H 0.041 0.959 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.053 0.947 34 H 0.086 0.914 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.067 0.933 38 H 0.056 0.944 39 H 0.038 0.962 40 H 0.038 0.962 41 H 0.393 0.607 42 H 0.102 0.898 43 H 0.096 0.904 44 H 0.279 0.721 45 H 0.091 0.909 46 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.252 4.446 14.702 16.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.156 4.156 3 C -0.106 4.106 4 H 0.069 0.931 5 C -0.199 4.199 6 C -0.149 4.149 7 C 0.044 3.956 8 H 0.083 0.917 9 C -0.166 4.166 10 C -0.205 4.205 11 N -0.371 5.371 12 C 0.039 3.961 13 C -0.191 4.191 14 C -0.153 4.153 15 C 0.026 3.974 16 C -0.539 4.539 17 H 0.081 0.919 18 C -0.181 4.181 19 N -0.482 5.482 20 Si 0.797 3.203 21 H -0.188 1.188 22 H -0.196 1.196 23 H -0.188 1.188 24 C -0.211 4.211 25 C -0.200 4.200 26 H 0.051 0.949 27 H 0.068 0.932 28 H 0.088 0.912 29 H 0.060 0.940 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.104 0.896 35 H 0.093 0.907 36 H 0.098 0.902 37 H 0.086 0.914 38 H 0.075 0.925 39 H 0.057 0.943 40 H 0.057 0.943 41 H 0.227 0.773 42 H 0.120 0.880 43 H 0.114 0.886 44 H 0.089 0.911 45 H 0.110 0.890 46 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 5.161 4.088 14.892 16.283 hybrid contribution -0.506 -0.252 -1.210 1.336 sum 4.655 3.835 13.682 14.953 Atomic orbital electron populations 1.21787 0.96421 1.01279 1.01320 1.21587 0.95684 0.97072 1.01291 1.21060 0.95608 0.95658 0.98294 0.93059 1.21834 1.01315 1.00287 0.96480 1.21879 0.95223 1.02189 0.95656 1.21010 0.93322 0.94038 0.87278 0.91699 1.21975 0.96136 1.01164 0.97370 1.21723 1.00412 0.99890 0.98448 1.43961 1.73053 1.07314 1.12745 1.17340 0.99994 0.91577 0.87187 1.20196 1.07723 0.93569 0.97640 1.20886 1.01038 0.98975 0.94369 1.17765 0.93779 0.91578 0.94296 1.19541 1.33485 1.06573 0.94333 0.91852 1.26537 0.93614 0.96933 1.01036 1.69893 1.30844 1.18059 1.29389 0.85363 0.78962 0.77769 0.78169 1.18801 1.19557 1.18846 1.20760 1.08155 0.94573 0.97564 1.20087 1.08349 0.97931 0.93653 0.94888 0.93184 0.91151 0.94033 0.90871 0.91761 0.92400 0.92780 0.89595 0.90686 0.90157 0.91427 0.92503 0.94326 0.94294 0.77257 0.87981 0.88631 0.91131 0.89040 0.86845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.80 9.67 71.99 0.70 -3.10 16 2 C -0.12 -2.92 5.28 30.60 0.16 -2.76 16 3 C -0.09 -1.94 2.34 -10.80 -0.03 -1.97 16 4 H 0.05 1.42 7.64 -2.38 -0.02 1.40 16 5 C -0.14 -2.47 9.02 71.98 0.65 -1.83 16 6 C -0.11 -2.20 4.28 30.59 0.13 -2.07 16 7 C 0.15 3.86 2.05 44.99 0.09 3.95 16 8 H 0.07 1.99 3.75 -2.39 -0.01 1.99 16 9 C -0.13 -2.97 5.61 30.60 0.17 -2.80 16 10 C -0.15 -4.28 8.77 71.98 0.63 -3.65 16 11 N -0.74 -22.65 4.26 -318.54 -1.36 -24.01 16 12 C 0.14 5.70 5.37 38.67 0.21 5.91 16 13 C -0.17 -7.80 7.97 22.15 0.18 -7.63 16 14 C -0.13 -7.22 8.60 22.48 0.19 -7.02 16 15 C 0.03 1.62 5.55 -21.27 -0.12 1.50 16 16 C -0.51 -29.24 9.04 23.37 0.21 -29.03 16 17 H 0.06 3.55 7.87 -2.91 -0.02 3.53 16 18 C 0.03 1.56 5.25 85.22 0.45 2.01 16 19 N -0.85 -47.87 10.83 21.81 0.24 -47.63 16 20 Si 0.98 41.46 29.57 68.60 2.03 43.49 16 21 H -0.26 -10.90 7.11 99.48 0.71 -10.20 16 22 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 23 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 24 C -0.19 -9.69 9.74 22.48 0.22 -9.47 16 25 C -0.18 -7.79 9.82 22.15 0.22 -7.57 16 26 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.07 1.46 6.50 -2.39 -0.02 1.45 16 29 H 0.04 1.24 6.26 -2.39 -0.01 1.23 16 30 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 32 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.05 0.96 6.42 -2.39 -0.02 0.94 16 34 H 0.09 1.41 8.14 -2.39 -0.02 1.40 16 35 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 38 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.04 1.35 6.37 -2.39 -0.02 1.33 16 40 H 0.04 1.20 7.78 -2.39 -0.02 1.18 16 41 H 0.39 10.65 8.73 -92.71 -0.81 9.84 16 42 H 0.10 4.36 5.50 -2.91 -0.02 4.34 16 43 H 0.10 5.56 6.22 -2.91 -0.02 5.54 16 44 H 0.28 14.37 8.30 -92.71 -0.77 13.60 16 45 H 0.09 4.46 8.06 -2.91 -0.02 4.44 16 46 H 0.11 4.25 8.06 -2.91 -0.02 4.22 16 Total: -1.00 -61.79 353.21 5.11 -56.69 By element: Atomic # 1 Polarization: 36.84 SS G_CDS: 0.14 Total: 36.97 kcal Atomic # 6 Polarization: -69.58 SS G_CDS: 4.06 Total: -65.51 kcal Atomic # 7 Polarization: -70.52 SS G_CDS: -1.12 Total: -71.64 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 2.03 Total: 43.49 kcal Total: -61.79 5.11 -56.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037071386.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.326 kcal (2) G-P(sol) polarization free energy of solvation -61.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds