Wall clock time and date at job start Mon Mar 30 2020 01:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53005 * 109.46850 * 2 1 4 4 H 1.08999 * 109.46721 * 55.00504 * 3 2 1 5 5 C 1.52998 * 109.47085 * 294.99869 * 3 2 1 6 6 C 1.53001 * 109.46590 * 174.99872 * 3 2 1 7 7 C 1.53007 * 109.46868 * 184.99814 * 6 3 2 8 8 H 1.08991 * 109.47056 * 305.00473 * 7 6 3 9 9 C 1.52993 * 109.47265 * 185.00172 * 7 6 3 10 10 C 1.53002 * 109.47309 * 174.09304 * 9 7 6 11 11 N 1.46502 * 109.46915 * 64.99844 * 7 6 3 12 12 C 1.38854 * 120.00173 * 216.08021 * 11 7 6 13 13 C 1.39572 * 119.84157 * 185.01872 * 12 11 7 14 14 C 1.36339 * 120.15846 * 179.97438 * 13 12 11 15 15 C 1.40877 * 119.83750 * 0.02562 * 14 13 12 16 16 C 1.41137 * 120.15843 * 180.02562 * 15 14 13 17 17 H 1.07998 * 120.00789 * 154.64644 * 16 15 14 18 18 C 1.39875 * 119.99579 * 334.64630 * 16 15 14 19 19 N 1.30900 * 120.00009 * 342.71062 * 18 16 15 20 20 Si 1.86802 * 119.99701 * 162.70544 * 18 16 15 21 21 H 1.48500 * 109.47386 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47047 * 120.00456 * 20 18 16 23 23 H 1.48495 * 109.47080 * 240.00053 * 20 18 16 24 24 C 1.40884 * 119.69249 * 0.27758 * 15 14 13 25 25 C 1.36341 * 119.83357 * 359.43755 * 24 15 14 26 26 H 1.09000 * 109.47027 * 300.00202 * 1 2 3 27 27 H 1.09002 * 109.46749 * 60.00251 * 1 2 3 28 28 H 1.08999 * 109.46604 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47258 * 240.00249 * 2 1 3 30 30 H 1.08996 * 109.47031 * 120.00036 * 2 1 3 31 31 H 1.08997 * 109.46973 * 300.00133 * 5 3 2 32 32 H 1.09002 * 109.47111 * 60.00331 * 5 3 2 33 33 H 1.08999 * 109.46714 * 180.02562 * 5 3 2 34 34 H 1.09002 * 109.47290 * 65.00174 * 6 3 2 35 35 H 1.09000 * 109.47685 * 304.99523 * 6 3 2 36 36 H 1.09006 * 109.46851 * 294.08780 * 9 7 6 37 37 H 1.08997 * 109.47185 * 54.08811 * 9 7 6 38 38 H 1.08994 * 109.46632 * 305.48172 * 10 9 7 39 39 H 1.09000 * 109.46915 * 65.48027 * 10 9 7 40 40 H 1.09002 * 109.47131 * 185.48256 * 10 9 7 41 41 H 0.96998 * 119.99876 * 36.08526 * 11 7 6 42 42 H 1.07994 * 119.91927 * 359.97438 * 13 12 11 43 43 H 1.08000 * 120.08139 * 179.97438 * 14 13 12 44 44 H 0.97000 * 119.99771 * 180.02562 * 19 18 16 45 45 H 1.08004 * 120.08510 * 179.70396 * 24 15 14 46 46 H 1.07999 * 119.92030 * 180.28122 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6352 2.1266 -1.3073 6 6 3.5648 1.4443 0.1258 7 6 4.0645 2.8851 0.2511 8 1 3.6971 3.4716 -0.5909 9 6 5.5944 2.8961 0.2514 10 6 6.0941 4.3420 0.2283 11 7 3.5717 3.4657 1.5026 12 6 3.2105 4.8055 1.5516 13 6 2.8416 5.3814 2.7683 14 6 2.4863 6.6965 2.8238 15 6 2.4917 7.4742 1.6492 16 6 2.1256 8.8364 1.6990 17 1 2.4984 9.5235 0.9538 18 6 1.2800 9.2966 2.7137 19 7 0.5629 8.4463 3.4039 20 14 1.1742 11.1245 3.0840 21 1 2.0773 11.8680 2.1692 22 1 -0.2221 11.5896 2.8864 23 1 1.5829 11.3690 4.4905 24 6 2.8590 6.8846 0.4235 25 6 3.2176 5.5698 0.3838 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 2.0699 1.5875 -2.1491 32 1 0.5489 2.1253 -1.3969 33 1 1.9989 3.1541 -1.3075 34 1 4.0030 0.9836 -0.7596 35 1 3.8571 0.8801 1.0114 36 1 5.9611 2.3993 1.1498 37 1 5.9617 2.3705 -0.6300 38 1 5.6492 4.8665 -0.6173 39 1 5.8093 4.8397 1.1552 40 1 7.1797 4.3498 0.1303 41 1 3.4977 2.9141 2.2971 42 1 2.8376 4.7838 3.6678 43 1 2.2007 7.1407 3.7659 44 1 -0.0238 8.7655 4.1073 45 1 2.8608 7.4738 -0.4817 46 1 3.5038 5.1176 -0.5542 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037071387.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:46 Heat of formation + Delta-G solvation = -11.197030 kcal Electronic energy + Delta-G solvation = -21725.364732 eV Core-core repulsion = 18806.238518 eV Total energy + Delta-G solvation = -2919.126214 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -38.79370 -37.13349 -35.31712 -33.40755 -31.61969 -30.64721 -29.36254 -28.60080 -27.37496 -25.18667 -24.02140 -22.47859 -21.71998 -20.38259 -19.78130 -19.26640 -17.11182 -16.31678 -15.39524 -15.08723 -14.96490 -14.62221 -14.01355 -13.79271 -13.65620 -13.24127 -12.85412 -12.70492 -12.33315 -12.19074 -12.01494 -11.89801 -11.77027 -11.58569 -11.48814 -11.27225 -11.14880 -11.02434 -10.78075 -10.74556 -10.62862 -10.43070 -10.41392 -10.21270 -10.02141 -9.58496 -9.25282 -9.14262 -8.44272 -7.43225 -6.58781 -6.30187 -3.98355 2.94009 3.14850 3.17928 3.23140 3.39463 4.09009 4.39607 4.70480 4.80789 4.95292 5.01646 5.26796 5.35925 5.42028 5.47856 5.61014 5.64608 5.74195 5.81932 5.87955 5.89228 5.93792 6.00381 6.06153 6.10861 6.16551 6.20856 6.27073 6.31793 6.34954 6.37727 6.51553 6.58479 6.60910 6.76923 6.94139 7.11921 7.25670 7.37075 7.67003 7.72259 7.86241 8.20276 8.39659 8.57798 8.75683 8.87549 9.11175 9.20988 10.42355 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.020607 B = 0.004323 C = 0.003865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.428268 B = 6475.901025 C = 7241.899430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.118 4.118 3 C -0.090 4.090 4 H 0.079 0.921 5 C -0.148 4.148 6 C -0.121 4.121 7 C 0.155 3.845 8 H 0.083 0.917 9 C -0.135 4.135 10 C -0.146 4.146 11 N -0.751 5.751 12 C 0.104 3.896 13 C -0.168 4.168 14 C -0.121 4.121 15 C 0.073 3.927 16 C -0.468 4.468 17 H 0.071 0.929 18 C 0.075 3.925 19 N -0.810 5.810 20 Si 0.900 3.100 21 H -0.263 1.263 22 H -0.278 1.278 23 H -0.275 1.275 24 C -0.187 4.187 25 C -0.159 4.159 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.048 0.952 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.047 0.953 32 H 0.053 0.947 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.059 0.941 36 H 0.055 0.945 37 H 0.054 0.946 38 H 0.053 0.947 39 H 0.066 0.934 40 H 0.039 0.961 41 H 0.382 0.618 42 H 0.084 0.916 43 H 0.117 0.883 44 H 0.274 0.726 45 H 0.088 0.912 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.759 -13.183 -4.882 14.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.155 4.155 3 C -0.108 4.108 4 H 0.097 0.903 5 C -0.205 4.205 6 C -0.159 4.159 7 C 0.048 3.952 8 H 0.101 0.899 9 C -0.175 4.175 10 C -0.203 4.203 11 N -0.385 5.385 12 C 0.007 3.993 13 C -0.189 4.189 14 C -0.141 4.141 15 C 0.070 3.930 16 C -0.500 4.500 17 H 0.089 0.911 18 C -0.140 4.140 19 N -0.438 5.438 20 Si 0.726 3.274 21 H -0.187 1.187 22 H -0.203 1.203 23 H -0.200 1.200 24 C -0.207 4.207 25 C -0.181 4.181 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.067 0.933 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.085 0.915 40 H 0.058 0.942 41 H 0.214 0.786 42 H 0.102 0.898 43 H 0.134 0.866 44 H 0.085 0.915 45 H 0.106 0.894 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.619 -13.162 -4.892 14.500 hybrid contribution -0.193 0.613 0.555 0.849 sum 3.425 -12.549 -4.337 13.712 Atomic orbital electron populations 1.21822 0.96127 1.00994 1.02178 1.21577 0.95798 0.96890 1.01275 1.21115 0.95175 0.95321 0.99210 0.90306 1.21901 1.01088 1.00991 0.96551 1.21944 0.95581 0.96948 1.01441 1.20809 0.91864 0.92951 0.89539 0.89938 1.22040 0.97147 0.97542 1.00730 1.21743 0.99013 0.96382 1.03189 1.43907 1.75944 1.08215 1.10426 1.17295 1.04321 0.83805 0.93912 1.20042 1.08257 0.96278 0.94373 1.20895 1.01690 0.92604 0.98925 1.17465 0.91809 0.93352 0.90349 1.19386 1.25950 0.94262 1.10364 0.91060 1.25768 0.93802 0.99339 0.95059 1.69861 1.19373 1.35983 1.18602 0.86400 0.78520 0.83561 0.78966 1.18682 1.20333 1.20026 1.20571 1.09387 0.94067 0.96707 1.19885 1.08571 0.94843 0.94817 0.92670 0.92505 0.93323 0.92524 0.92475 0.93422 0.92836 0.92024 0.91751 0.92270 0.92640 0.92709 0.92840 0.91537 0.94200 0.78571 0.89762 0.86568 0.91493 0.89364 0.89379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.67 37.16 0.36 -1.21 16 2 C -0.12 -1.22 5.40 -26.73 -0.14 -1.36 16 3 C -0.09 -1.08 2.33 -90.62 -0.21 -1.29 16 4 H 0.08 1.14 7.62 -51.93 -0.40 0.75 16 5 C -0.15 -1.84 8.71 37.16 0.32 -1.52 16 6 C -0.12 -1.39 4.29 -26.73 -0.11 -1.51 16 7 C 0.16 2.15 2.02 -67.93 -0.14 2.02 16 8 H 0.08 1.27 3.89 -51.93 -0.20 1.07 16 9 C -0.14 -1.77 5.60 -26.73 -0.15 -1.92 16 10 C -0.15 -2.17 8.60 37.16 0.32 -1.85 16 11 N -0.75 -12.31 4.30 -52.03 -0.22 -12.53 16 12 C 0.10 2.16 5.54 -83.69 -0.46 1.69 16 13 C -0.17 -3.86 9.82 -39.77 -0.39 -4.25 16 14 C -0.12 -3.17 8.63 -39.27 -0.34 -3.51 16 15 C 0.07 1.97 5.57 -106.80 -0.59 1.38 16 16 C -0.47 -12.82 9.03 -37.87 -0.34 -13.16 16 17 H 0.07 1.90 7.90 -52.49 -0.41 1.48 16 18 C 0.07 1.95 5.14 -17.34 -0.09 1.86 16 19 N -0.81 -21.75 10.97 55.54 0.61 -21.14 16 20 Si 0.90 19.46 29.59 -169.99 -5.03 14.43 16 21 H -0.26 -5.63 7.11 56.52 0.40 -5.23 16 22 H -0.28 -5.92 7.11 56.52 0.40 -5.51 16 23 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 24 C -0.19 -4.60 9.74 -39.26 -0.38 -4.98 16 25 C -0.16 -3.45 7.86 -39.77 -0.31 -3.77 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.58 6.56 -51.93 -0.34 0.24 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.05 0.65 6.57 -51.93 -0.34 0.31 16 33 H 0.06 0.88 6.46 -51.93 -0.34 0.54 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.05 0.82 7.13 -51.93 -0.37 0.45 16 39 H 0.07 1.17 6.97 -51.93 -0.36 0.81 16 40 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.38 5.86 8.72 -40.82 -0.36 5.51 16 42 H 0.08 1.78 8.06 -52.49 -0.42 1.35 16 43 H 0.12 3.18 6.19 -52.49 -0.32 2.86 16 44 H 0.27 6.74 8.30 -40.82 -0.34 6.40 16 45 H 0.09 2.08 8.06 -52.48 -0.42 1.65 16 46 H 0.09 1.73 5.13 -52.49 -0.27 1.46 16 LS Contribution 353.11 15.07 5.32 5.32 Total: -1.00 -27.06 353.11 -9.91 -36.97 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: -7.92 Total: 10.32 kcal Atomic # 6 Polarization: -30.72 SS G_CDS: -2.67 Total: -33.38 kcal Atomic # 7 Polarization: -34.05 SS G_CDS: 0.39 Total: -33.67 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -5.03 Total: 14.43 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -27.06 -9.91 -36.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037071387.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.775 kcal (2) G-P(sol) polarization free energy of solvation -27.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds