Wall clock time and date at job start Mon Mar 30 2020 01:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53005 * 109.46850 * 2 1 4 4 H 1.08999 * 109.46721 * 55.00504 * 3 2 1 5 5 C 1.52998 * 109.47085 * 294.99869 * 3 2 1 6 6 C 1.53001 * 109.46590 * 174.99872 * 3 2 1 7 7 C 1.53007 * 109.46868 * 184.99814 * 6 3 2 8 8 H 1.08991 * 109.47056 * 305.00473 * 7 6 3 9 9 C 1.52993 * 109.47265 * 185.00172 * 7 6 3 10 10 C 1.53002 * 109.47309 * 174.09304 * 9 7 6 11 11 N 1.46502 * 109.46915 * 64.99844 * 7 6 3 12 12 C 1.38854 * 120.00173 * 216.08021 * 11 7 6 13 13 C 1.39572 * 119.84157 * 185.01872 * 12 11 7 14 14 C 1.36339 * 120.15846 * 179.97438 * 13 12 11 15 15 C 1.40877 * 119.83750 * 0.02562 * 14 13 12 16 16 C 1.41137 * 120.15843 * 180.02562 * 15 14 13 17 17 H 1.07998 * 120.00789 * 154.64644 * 16 15 14 18 18 C 1.39875 * 119.99579 * 334.64630 * 16 15 14 19 19 N 1.30900 * 120.00009 * 342.71062 * 18 16 15 20 20 Si 1.86802 * 119.99701 * 162.70544 * 18 16 15 21 21 H 1.48500 * 109.47386 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47047 * 120.00456 * 20 18 16 23 23 H 1.48495 * 109.47080 * 240.00053 * 20 18 16 24 24 C 1.40884 * 119.69249 * 0.27758 * 15 14 13 25 25 C 1.36341 * 119.83357 * 359.43755 * 24 15 14 26 26 H 1.09000 * 109.47027 * 300.00202 * 1 2 3 27 27 H 1.09002 * 109.46749 * 60.00251 * 1 2 3 28 28 H 1.08999 * 109.46604 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47258 * 240.00249 * 2 1 3 30 30 H 1.08996 * 109.47031 * 120.00036 * 2 1 3 31 31 H 1.08997 * 109.46973 * 300.00133 * 5 3 2 32 32 H 1.09002 * 109.47111 * 60.00331 * 5 3 2 33 33 H 1.08999 * 109.46714 * 180.02562 * 5 3 2 34 34 H 1.09002 * 109.47290 * 65.00174 * 6 3 2 35 35 H 1.09000 * 109.47685 * 304.99523 * 6 3 2 36 36 H 1.09006 * 109.46851 * 294.08780 * 9 7 6 37 37 H 1.08997 * 109.47185 * 54.08811 * 9 7 6 38 38 H 1.08994 * 109.46632 * 305.48172 * 10 9 7 39 39 H 1.09000 * 109.46915 * 65.48027 * 10 9 7 40 40 H 1.09002 * 109.47131 * 185.48256 * 10 9 7 41 41 H 0.96998 * 119.99876 * 36.08526 * 11 7 6 42 42 H 1.07994 * 119.91927 * 359.97438 * 13 12 11 43 43 H 1.08000 * 120.08139 * 179.97438 * 14 13 12 44 44 H 0.97000 * 119.99771 * 180.02562 * 19 18 16 45 45 H 1.08004 * 120.08510 * 179.70396 * 24 15 14 46 46 H 1.07999 * 119.92030 * 180.28122 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6352 2.1266 -1.3073 6 6 3.5648 1.4443 0.1258 7 6 4.0645 2.8851 0.2511 8 1 3.6971 3.4716 -0.5909 9 6 5.5944 2.8961 0.2514 10 6 6.0941 4.3420 0.2283 11 7 3.5717 3.4657 1.5026 12 6 3.2105 4.8055 1.5516 13 6 2.8416 5.3814 2.7683 14 6 2.4863 6.6965 2.8238 15 6 2.4917 7.4742 1.6492 16 6 2.1256 8.8364 1.6990 17 1 2.4984 9.5235 0.9538 18 6 1.2800 9.2966 2.7137 19 7 0.5629 8.4463 3.4039 20 14 1.1742 11.1245 3.0840 21 1 2.0773 11.8680 2.1692 22 1 -0.2221 11.5896 2.8864 23 1 1.5829 11.3690 4.4905 24 6 2.8590 6.8846 0.4235 25 6 3.2176 5.5698 0.3838 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 2.0699 1.5875 -2.1491 32 1 0.5489 2.1253 -1.3969 33 1 1.9989 3.1541 -1.3075 34 1 4.0030 0.9836 -0.7596 35 1 3.8571 0.8801 1.0114 36 1 5.9611 2.3993 1.1498 37 1 5.9617 2.3705 -0.6300 38 1 5.6492 4.8665 -0.6173 39 1 5.8093 4.8397 1.1552 40 1 7.1797 4.3498 0.1303 41 1 3.4977 2.9141 2.2971 42 1 2.8376 4.7838 3.6678 43 1 2.2007 7.1407 3.7659 44 1 -0.0238 8.7655 4.1073 45 1 2.8608 7.4738 -0.4817 46 1 3.5038 5.1176 -0.5542 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037071387.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:46 Heat of formation + Delta-G solvation = -23.064613 kcal Electronic energy + Delta-G solvation = -21725.879349 eV Core-core repulsion = 18806.238518 eV Total energy + Delta-G solvation = -2919.640831 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.24392 -38.58723 -36.59214 -35.14793 -33.17202 -31.66106 -31.22526 -30.17308 -28.63529 -26.42563 -25.66070 -23.44470 -23.35328 -22.19706 -20.93193 -20.49562 -19.03650 -17.87515 -17.04149 -16.50340 -16.05443 -15.74082 -15.57810 -15.07536 -15.03521 -14.39493 -14.33799 -14.19108 -13.86460 -13.62321 -13.44605 -13.25753 -13.09461 -12.84815 -12.75135 -12.71550 -12.53701 -12.39245 -12.31103 -12.04708 -11.85467 -11.74026 -11.44848 -11.39477 -11.29181 -11.20319 -10.95416 -10.93913 -10.16099 -9.34082 -8.51450 -8.05533 -5.96437 1.13679 1.23539 1.39560 1.53807 1.60369 2.28335 2.88006 3.01641 3.72657 3.88906 4.05152 4.07224 4.24258 4.33586 4.41590 4.49278 4.50296 4.56117 4.66652 4.71196 4.80170 4.85841 4.92345 4.94862 5.03552 5.11499 5.13334 5.15404 5.18270 5.23218 5.26490 5.30738 5.32101 5.35902 5.43794 5.49143 5.53828 5.61041 5.64217 5.79801 5.86919 5.99066 6.22732 6.46403 6.74182 6.97011 7.12362 7.21917 7.40047 8.51532 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.020607 B = 0.004323 C = 0.003865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.428268 B = 6475.901025 C = 7241.899430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.113 4.113 3 C -0.088 4.088 4 H 0.050 0.950 5 C -0.147 4.147 6 C -0.112 4.112 7 C 0.151 3.849 8 H 0.070 0.930 9 C -0.129 4.129 10 C -0.145 4.145 11 N -0.740 5.740 12 C 0.135 3.865 13 C -0.182 4.182 14 C -0.139 4.139 15 C 0.033 3.967 16 C -0.508 4.508 17 H 0.064 0.936 18 C 0.032 3.968 19 N -0.846 5.846 20 Si 0.974 3.026 21 H -0.261 1.261 22 H -0.269 1.269 23 H -0.267 1.267 24 C -0.196 4.196 25 C -0.160 4.160 26 H 0.041 0.959 27 H 0.053 0.947 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.048 0.952 33 H 0.038 0.962 34 H 0.087 0.913 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.082 0.918 38 H 0.043 0.957 39 H 0.033 0.967 40 H 0.056 0.944 41 H 0.391 0.609 42 H 0.102 0.898 43 H 0.095 0.905 44 H 0.280 0.720 45 H 0.090 0.910 46 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.819 -15.519 -5.764 17.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.150 4.150 3 C -0.107 4.107 4 H 0.068 0.932 5 C -0.204 4.204 6 C -0.150 4.150 7 C 0.045 3.955 8 H 0.088 0.912 9 C -0.168 4.168 10 C -0.203 4.203 11 N -0.373 5.373 12 C 0.035 3.965 13 C -0.205 4.205 14 C -0.159 4.159 15 C 0.030 3.970 16 C -0.540 4.540 17 H 0.082 0.918 18 C -0.179 4.179 19 N -0.474 5.474 20 Si 0.795 3.205 21 H -0.185 1.185 22 H -0.194 1.194 23 H -0.192 1.192 24 C -0.216 4.216 25 C -0.182 4.182 26 H 0.060 0.940 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.067 0.933 33 H 0.057 0.943 34 H 0.106 0.894 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.101 0.899 38 H 0.062 0.938 39 H 0.052 0.948 40 H 0.075 0.925 41 H 0.225 0.775 42 H 0.120 0.880 43 H 0.113 0.887 44 H 0.091 0.909 45 H 0.108 0.892 46 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 4.697 -15.552 -5.786 17.245 hybrid contribution -0.452 1.118 0.740 1.415 sum 4.245 -14.434 -5.046 15.869 Atomic orbital electron populations 1.21833 0.96383 1.01692 1.01371 1.21533 0.95563 0.95568 1.02327 1.21072 0.95658 0.96219 0.97751 0.93179 1.21890 1.00953 0.99958 0.97646 1.21885 0.94918 0.95062 1.03122 1.21024 0.92736 0.94270 0.87442 0.91225 1.21989 0.95873 0.96446 1.02462 1.21716 1.00250 0.97365 1.00943 1.43992 1.74722 1.06415 1.12136 1.17313 1.00961 0.85518 0.92690 1.20223 1.08601 0.95561 0.96080 1.20803 1.03177 0.93984 0.97977 1.17750 0.93825 0.93972 0.91470 1.19592 1.27693 0.94845 1.11827 0.91781 1.26560 0.92885 1.04015 0.94437 1.69927 1.20131 1.38058 1.19333 0.85295 0.78723 0.77580 0.78856 1.18523 1.19394 1.19174 1.20761 1.09293 0.95387 0.96133 1.20065 1.08039 0.93910 0.96228 0.94019 0.92831 0.91883 0.91027 0.91763 0.91458 0.93267 0.94275 0.89407 0.91038 0.91837 0.89920 0.93764 0.94815 0.92500 0.77521 0.87964 0.88697 0.90949 0.89200 0.86924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.88 9.67 71.98 0.70 -2.18 16 2 C -0.11 -1.97 5.40 30.60 0.17 -1.81 16 3 C -0.09 -1.92 2.33 -10.79 -0.03 -1.94 16 4 H 0.05 1.38 7.62 -2.39 -0.02 1.36 16 5 C -0.15 -3.38 8.71 71.98 0.63 -2.75 16 6 C -0.11 -2.14 4.29 30.60 0.13 -2.01 16 7 C 0.15 3.75 2.02 44.99 0.09 3.85 16 8 H 0.07 1.97 3.89 -2.39 -0.01 1.96 16 9 C -0.13 -2.90 5.60 30.59 0.17 -2.72 16 10 C -0.15 -4.04 8.60 71.98 0.62 -3.42 16 11 N -0.74 -22.90 4.30 -318.54 -1.37 -24.27 16 12 C 0.14 5.57 5.54 38.67 0.21 5.78 16 13 C -0.18 -8.53 9.82 22.15 0.22 -8.32 16 14 C -0.14 -7.62 8.63 22.47 0.19 -7.42 16 15 C 0.03 1.85 5.57 -21.27 -0.12 1.73 16 16 C -0.51 -29.24 9.03 23.38 0.21 -29.03 16 17 H 0.06 3.61 7.90 -2.91 -0.02 3.58 16 18 C 0.03 1.74 5.14 85.23 0.44 2.17 16 19 N -0.85 -47.27 10.97 21.82 0.24 -47.03 16 20 Si 0.97 41.16 29.59 68.60 2.03 43.19 16 21 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 22 H -0.27 -10.88 7.11 99.48 0.71 -10.18 16 23 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 24 C -0.20 -9.92 9.74 22.48 0.22 -9.70 16 25 C -0.16 -6.96 7.86 22.15 0.17 -6.79 16 26 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.05 1.01 6.56 -2.39 -0.02 1.00 16 28 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.05 1.15 6.57 -2.39 -0.02 1.13 16 33 H 0.04 1.06 6.46 -2.39 -0.02 1.05 16 34 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 37 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.04 1.29 7.13 -2.39 -0.02 1.27 16 39 H 0.03 1.14 6.97 -2.39 -0.02 1.12 16 40 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.39 11.10 8.72 -92.71 -0.81 10.29 16 42 H 0.10 4.31 8.06 -2.91 -0.02 4.29 16 43 H 0.10 5.51 6.19 -2.91 -0.02 5.49 16 44 H 0.28 14.26 8.30 -92.71 -0.77 13.49 16 45 H 0.09 4.39 8.06 -2.91 -0.02 4.37 16 46 H 0.11 4.31 5.13 -2.91 -0.01 4.29 16 Total: -1.00 -61.61 353.11 5.06 -56.54 By element: Atomic # 1 Polarization: 36.00 SS G_CDS: 0.14 Total: 36.14 kcal Atomic # 6 Polarization: -68.60 SS G_CDS: 4.02 Total: -64.57 kcal Atomic # 7 Polarization: -70.17 SS G_CDS: -1.13 Total: -71.30 kcal Atomic # 14 Polarization: 41.16 SS G_CDS: 2.03 Total: 43.19 kcal Total: -61.61 5.06 -56.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037071387.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.479 kcal (2) G-P(sol) polarization free energy of solvation -61.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds