Wall clock time and date at job start Mon Mar 30 2020 02:01:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31272 * 1 3 3 Si 1.86803 * 120.00064 * 2 1 4 4 H 1.48503 * 109.46830 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46836 * 299.99716 * 3 2 1 6 6 H 1.48497 * 109.47446 * 59.99771 * 3 2 1 7 7 C 1.39192 * 120.00221 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00704 * 179.97438 * 7 2 1 9 9 N 1.36662 * 119.99687 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99947 * 179.97438 * 9 7 2 11 11 O 1.21608 * 120.00015 * 359.97438 * 10 9 7 12 12 C 1.47684 * 119.99932 * 179.97438 * 10 9 7 13 13 C 1.38992 * 121.10876 * 354.13515 * 12 10 9 14 14 C 1.39352 * 119.55102 * 179.97438 * 13 12 10 15 15 Cl 1.73601 * 119.06706 * 179.97438 * 14 13 12 16 16 N 1.31151 * 121.86789 * 0.02562 * 14 13 12 17 17 C 1.33601 * 121.83205 * 359.96409 * 16 14 13 18 18 C 1.40685 * 120.95150 * 180.02562 * 17 16 14 19 19 C 1.36092 * 119.74497 * 180.02562 * 18 17 16 20 20 C 1.39315 * 121.04115 * 359.97438 * 19 18 17 21 21 C 1.36298 * 120.82560 * 0.02562 * 20 19 18 22 22 C 1.40041 * 119.64673 * 0.02562 * 21 20 19 23 23 H 0.96999 * 119.99372 * 0.02562 * 1 2 3 24 24 H 0.97001 * 119.99616 * 359.97438 * 9 7 2 25 25 H 1.07997 * 120.22190 * 359.95261 * 13 12 10 26 26 H 1.08002 * 120.12938 * 0.02562 * 18 17 16 27 27 H 1.08000 * 119.48015 * 180.02562 * 19 18 17 28 28 H 1.08000 * 119.59104 * 179.74351 * 20 19 18 29 29 H 1.07995 * 120.17583 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3127 0.0000 0.0000 3 14 2.2468 1.6178 0.0000 4 1 3.7068 1.3463 -0.0006 5 1 1.8880 2.3964 -1.2126 6 1 1.8880 2.3965 1.2124 7 6 2.0087 -1.2054 0.0005 8 1 3.0887 -1.2055 0.0001 9 7 1.3254 -2.3889 0.0005 10 6 1.9993 -3.5561 0.0005 11 8 3.2154 -3.5561 0.0001 12 6 1.2608 -4.8351 0.0011 13 6 -0.1234 -4.8651 0.1233 14 6 -0.7873 -6.0902 0.1194 15 17 -2.5163 -6.1131 0.2734 16 7 -0.1429 -7.2267 0.0037 17 6 1.1867 -7.2735 -0.1177 18 6 1.8591 -8.5031 -0.2413 19 6 3.2144 -8.5223 -0.3630 20 6 3.9520 -7.3405 -0.3681 21 6 3.3344 -6.1312 -0.2505 22 6 1.9410 -6.0745 -0.1224 23 1 -0.4849 0.8401 -0.0004 24 1 0.3554 -2.3888 0.0005 25 1 -0.6805 -3.9451 0.2209 26 1 1.3019 -9.4283 -0.2395 27 1 3.7262 -9.4686 -0.4580 28 1 5.0271 -7.3832 -0.4619 29 1 3.9165 -5.2215 -0.2554 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040809013.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:23 Heat of formation + Delta-G solvation = 12.455032 kcal Electronic energy + Delta-G solvation = -18011.180668 eV Core-core repulsion = 14925.030960 eV Total energy + Delta-G solvation = -3086.149708 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 276.041 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.66051 -38.25164 -37.20372 -36.00528 -34.50871 -32.98329 -31.77235 -30.08072 -29.68885 -25.92672 -24.19168 -23.28330 -22.23758 -20.00766 -18.47273 -17.90107 -17.32203 -16.61989 -15.47456 -14.83178 -14.64685 -14.61339 -14.33153 -14.01659 -13.88618 -13.51909 -12.89244 -12.63705 -12.34520 -11.90967 -11.45076 -11.39301 -11.21728 -11.04304 -10.82679 -10.66272 -10.53638 -10.20160 -9.82784 -9.72231 -8.49585 -8.44689 -8.41478 -7.96514 -6.91380 -4.14567 0.36553 0.95797 1.93925 2.04591 2.91126 3.03438 3.05938 3.12555 3.81657 3.82802 4.38454 4.39903 4.59658 4.95409 4.98522 5.09236 5.20058 5.25547 5.47254 5.52822 5.78922 5.95461 6.04830 6.24799 6.36895 6.52138 6.79442 6.83168 7.09089 7.13452 7.63517 7.90218 8.16557 8.72659 9.04851 9.66178 10.23159 Molecular weight = 276.04amu Principal moments of inertia in cm(-1) A = 0.017753 B = 0.005823 C = 0.004394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.819701 B = 4807.663595 C = 6370.091697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.026 3.974 3 Si 0.941 3.059 4 H -0.262 1.262 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.283 4.283 8 H 0.117 0.883 9 N -0.517 5.517 10 C 0.447 3.553 11 O -0.590 6.590 12 C -0.011 4.011 13 C -0.170 4.170 14 C 0.216 3.784 15 Cl -0.038 7.038 16 N -0.486 5.486 17 C 0.146 3.854 18 C -0.113 4.113 19 C -0.093 4.093 20 C -0.141 4.141 21 C -0.079 4.079 22 C -0.080 4.080 23 H 0.283 0.717 24 H 0.397 0.603 25 H 0.148 0.852 26 H 0.132 0.868 27 H 0.125 0.875 28 H 0.125 0.875 29 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.197 -9.557 -0.306 9.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.181 4.181 3 Si 0.766 3.234 4 H -0.186 1.186 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.413 4.413 8 H 0.135 0.865 9 N -0.149 5.149 10 C 0.238 3.762 11 O -0.479 6.479 12 C -0.023 4.023 13 C -0.194 4.194 14 C 0.039 3.961 15 Cl -0.010 7.010 16 N -0.199 5.199 17 C 0.024 3.976 18 C -0.132 4.132 19 C -0.113 4.113 20 C -0.159 4.159 21 C -0.097 4.097 22 C -0.083 4.083 23 H 0.093 0.907 24 H 0.232 0.768 25 H 0.165 0.835 26 H 0.150 0.850 27 H 0.143 0.857 28 H 0.143 0.857 29 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -0.105 -10.173 -0.300 10.178 hybrid contribution -0.277 1.457 0.033 1.484 sum -0.383 -8.716 -0.267 8.729 Atomic orbital electron populations 1.69555 1.06473 1.29726 1.44457 1.25604 0.95791 1.00764 0.95980 0.85611 0.79911 0.79627 0.78266 1.18564 1.20115 1.20105 1.20116 0.94287 0.81822 1.45101 0.86503 1.42007 1.09914 1.04964 1.57977 1.17251 0.87385 0.82522 0.89062 1.90406 1.12667 1.85453 1.59374 1.20691 0.92398 0.94865 0.94369 1.21938 0.94160 0.97866 1.05445 1.21549 0.86885 0.89874 0.97814 1.98388 1.08265 1.98681 1.95677 1.67022 1.09109 1.28353 1.15388 1.18594 0.87353 0.93220 0.98403 1.20621 0.94101 0.95854 1.02585 1.20909 0.93690 0.98575 0.98114 1.21047 1.00279 0.92341 1.02241 1.22294 0.93514 1.00794 0.93055 1.18741 0.95408 0.92006 1.02167 0.90654 0.76803 0.83466 0.85038 0.85701 0.85734 0.80603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -21.08 13.04 55.51 0.72 -20.36 15 2 C 0.03 0.61 5.50 -17.44 -0.10 0.52 15 3 Si 0.94 18.75 29.55 -169.99 -5.02 13.72 15 4 H -0.26 -5.22 7.11 56.52 0.40 -4.82 15 5 H -0.28 -5.42 7.11 56.52 0.40 -5.02 15 6 H -0.28 -5.42 7.11 56.52 0.40 -5.02 15 7 C -0.28 -7.15 9.68 -15.04 -0.15 -7.29 15 8 H 0.12 3.05 7.15 -52.49 -0.38 2.68 15 9 N -0.52 -12.34 5.23 -11.89 -0.06 -12.40 15 10 C 0.45 10.43 7.69 -12.40 -0.10 10.33 15 11 O -0.59 -14.90 13.09 5.27 0.07 -14.83 15 12 C -0.01 -0.23 5.94 -104.35 -0.62 -0.85 15 13 C -0.17 -3.12 9.35 -38.89 -0.36 -3.48 15 14 C 0.22 3.80 7.26 -17.43 -0.13 3.67 15 15 Cl -0.04 -0.58 29.08 -51.86 -1.51 -2.08 15 16 N -0.49 -8.79 10.26 -8.14 -0.08 -8.88 15 17 C 0.15 2.60 6.61 -84.87 -0.56 2.04 15 18 C -0.11 -1.65 9.98 -39.43 -0.39 -2.04 15 19 C -0.09 -1.20 9.94 -39.95 -0.40 -1.59 15 20 C -0.14 -2.02 9.96 -39.88 -0.40 -2.42 15 21 C -0.08 -1.42 9.25 -39.60 -0.37 -1.78 15 22 C -0.08 -1.54 5.76 -106.51 -0.61 -2.16 15 23 H 0.28 6.42 8.31 -40.82 -0.34 6.08 15 24 H 0.40 9.00 6.06 -40.82 -0.25 8.75 15 25 H 0.15 2.53 6.55 -52.49 -0.34 2.18 15 26 H 0.13 1.65 8.06 -52.49 -0.42 1.23 15 27 H 0.13 1.17 8.06 -52.49 -0.42 0.74 15 28 H 0.12 1.44 8.06 -52.49 -0.42 1.02 15 29 H 0.18 3.53 4.98 -52.49 -0.26 3.27 15 LS Contribution 275.72 15.07 4.16 4.16 Total: -1.00 -27.10 275.72 -7.54 -34.64 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -1.63 Total: 11.09 kcal Atomic # 6 Polarization: -0.88 SS G_CDS: -4.18 Total: -5.06 kcal Atomic # 7 Polarization: -42.21 SS G_CDS: 0.58 Total: -41.64 kcal Atomic # 8 Polarization: -14.90 SS G_CDS: 0.07 Total: -14.83 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -5.02 Total: 13.72 kcal Atomic # 17 Polarization: -0.58 SS G_CDS: -1.51 Total: -2.08 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -27.10 -7.54 -34.64 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040809013.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.091 kcal (2) G-P(sol) polarization free energy of solvation -27.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds