Wall clock time and date at job start Mon Mar 30 2020 02:01:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31272 * 1 3 3 Si 1.86803 * 120.00064 * 2 1 4 4 H 1.48503 * 109.46830 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46836 * 299.99716 * 3 2 1 6 6 H 1.48497 * 109.47446 * 59.99771 * 3 2 1 7 7 C 1.39192 * 120.00221 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00704 * 179.97438 * 7 2 1 9 9 N 1.36662 * 119.99687 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99947 * 179.97438 * 9 7 2 11 11 O 1.21608 * 120.00015 * 359.97438 * 10 9 7 12 12 C 1.47684 * 119.99932 * 179.97438 * 10 9 7 13 13 C 1.38992 * 121.10876 * 354.13515 * 12 10 9 14 14 C 1.39352 * 119.55102 * 179.97438 * 13 12 10 15 15 Cl 1.73601 * 119.06706 * 179.97438 * 14 13 12 16 16 N 1.31151 * 121.86789 * 0.02562 * 14 13 12 17 17 C 1.33601 * 121.83205 * 359.96409 * 16 14 13 18 18 C 1.40685 * 120.95150 * 180.02562 * 17 16 14 19 19 C 1.36092 * 119.74497 * 180.02562 * 18 17 16 20 20 C 1.39315 * 121.04115 * 359.97438 * 19 18 17 21 21 C 1.36298 * 120.82560 * 0.02562 * 20 19 18 22 22 C 1.40041 * 119.64673 * 0.02562 * 21 20 19 23 23 H 0.96999 * 119.99372 * 0.02562 * 1 2 3 24 24 H 0.97001 * 119.99616 * 359.97438 * 9 7 2 25 25 H 1.07997 * 120.22190 * 359.95261 * 13 12 10 26 26 H 1.08002 * 120.12938 * 0.02562 * 18 17 16 27 27 H 1.08000 * 119.48015 * 180.02562 * 19 18 17 28 28 H 1.08000 * 119.59104 * 179.74351 * 20 19 18 29 29 H 1.07995 * 120.17583 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3127 0.0000 0.0000 3 14 2.2468 1.6178 0.0000 4 1 3.7068 1.3463 -0.0006 5 1 1.8880 2.3964 -1.2126 6 1 1.8880 2.3965 1.2124 7 6 2.0087 -1.2054 0.0005 8 1 3.0887 -1.2055 0.0001 9 7 1.3254 -2.3889 0.0005 10 6 1.9993 -3.5561 0.0005 11 8 3.2154 -3.5561 0.0001 12 6 1.2608 -4.8351 0.0011 13 6 -0.1234 -4.8651 0.1233 14 6 -0.7873 -6.0902 0.1194 15 17 -2.5163 -6.1131 0.2734 16 7 -0.1429 -7.2267 0.0037 17 6 1.1867 -7.2735 -0.1177 18 6 1.8591 -8.5031 -0.2413 19 6 3.2144 -8.5223 -0.3630 20 6 3.9520 -7.3405 -0.3681 21 6 3.3344 -6.1312 -0.2505 22 6 1.9410 -6.0745 -0.1224 23 1 -0.4849 0.8401 -0.0004 24 1 0.3554 -2.3888 0.0005 25 1 -0.6805 -3.9451 0.2209 26 1 1.3019 -9.4283 -0.2395 27 1 3.7262 -9.4686 -0.4580 28 1 5.0271 -7.3832 -0.4619 29 1 3.9165 -5.2215 -0.2554 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000040809013.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:23 Heat of formation + Delta-G solvation = -3.872704 kcal Electronic energy + Delta-G solvation = -18011.888692 eV Core-core repulsion = 14925.030960 eV Total energy + Delta-G solvation = -3086.857732 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 276.041 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.09634 -40.00621 -38.51220 -37.31750 -36.30738 -34.52340 -33.51517 -31.42925 -31.02719 -27.66376 -25.71691 -24.63869 -23.64862 -21.65599 -20.25656 -19.26381 -18.77182 -18.08087 -17.15780 -16.44807 -16.16458 -16.05079 -15.73508 -15.52459 -15.29300 -15.22171 -14.28997 -14.17010 -13.62106 -13.61347 -13.02690 -12.69766 -12.60847 -12.40013 -12.30722 -12.11195 -12.08099 -11.77875 -11.49505 -11.27675 -10.26291 -10.17082 -9.79620 -9.28911 -8.68342 -6.08135 -1.04010 -0.39967 0.58602 0.69222 1.36639 1.41732 1.56125 1.63738 2.17922 2.19193 2.74707 2.94779 3.17356 3.26459 3.53644 3.65741 3.80799 4.01670 4.15740 4.32348 4.42824 4.51185 4.67079 4.93894 5.12053 5.24194 5.29236 5.47761 5.54018 5.77968 5.89250 6.35772 6.47763 6.89601 7.24125 7.83369 8.47733 Molecular weight = 276.04amu Principal moments of inertia in cm(-1) A = 0.017753 B = 0.005823 C = 0.004394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.819701 B = 4807.663595 C = 6370.091697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C -0.005 4.005 3 Si 1.003 2.997 4 H -0.267 1.267 5 H -0.267 1.267 6 H -0.267 1.267 7 C -0.330 4.330 8 H 0.095 0.905 9 N -0.530 5.530 10 C 0.452 3.548 11 O -0.613 6.613 12 C -0.037 4.037 13 C -0.155 4.155 14 C 0.203 3.797 15 Cl -0.012 7.012 16 N -0.475 5.475 17 C 0.124 3.876 18 C -0.107 4.107 19 C -0.077 4.077 20 C -0.112 4.112 21 C -0.119 4.119 22 C -0.093 4.093 23 H 0.288 0.712 24 H 0.399 0.601 25 H 0.153 0.847 26 H 0.160 0.840 27 H 0.177 0.823 28 H 0.158 0.842 29 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.026 -12.378 -0.467 12.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.208 4.208 3 Si 0.825 3.175 4 H -0.191 1.191 5 H -0.192 1.192 6 H -0.192 1.192 7 C -0.460 4.460 8 H 0.113 0.887 9 N -0.162 5.162 10 C 0.242 3.758 11 O -0.503 6.503 12 C -0.049 4.049 13 C -0.178 4.178 14 C 0.024 3.976 15 Cl 0.016 6.984 16 N -0.187 5.187 17 C 0.003 3.997 18 C -0.125 4.125 19 C -0.096 4.096 20 C -0.130 4.130 21 C -0.137 4.137 22 C -0.096 4.096 23 H 0.098 0.902 24 H 0.234 0.766 25 H 0.171 0.829 26 H 0.178 0.822 27 H 0.195 0.805 28 H 0.175 0.825 29 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 0.100 -13.013 -0.461 13.022 hybrid contribution -0.307 1.881 0.073 1.908 sum -0.207 -11.132 -0.388 11.141 Atomic orbital electron populations 1.69599 1.07295 1.30604 1.45758 1.26326 0.96581 1.03031 0.94893 0.84726 0.78257 0.75886 0.78662 1.19145 1.19217 1.19198 1.19991 0.93598 0.83148 1.49213 0.88688 1.41933 1.09842 1.04848 1.59589 1.17789 0.87335 0.83455 0.87199 1.90392 1.14005 1.86360 1.59545 1.20536 0.93279 0.94109 0.96972 1.22034 0.93501 0.98763 1.03467 1.21632 0.88172 0.89391 0.98371 1.98393 1.05807 1.98628 1.95539 1.67134 1.09401 1.28277 1.13910 1.19041 0.87335 0.93997 0.99373 1.21064 0.95086 0.95387 1.01009 1.21434 0.92999 0.99888 0.95299 1.21491 1.02092 0.91368 0.98035 1.22101 0.93097 1.01611 0.96920 1.18944 0.96227 0.92033 1.02404 0.90185 0.76567 0.82932 0.82219 0.80540 0.82471 0.83427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -45.04 13.04 21.70 0.28 -44.76 15 2 C 0.00 -0.22 5.50 85.01 0.47 0.24 15 3 Si 1.00 39.58 29.55 68.60 2.03 41.61 15 4 H -0.27 -10.63 7.11 99.48 0.71 -9.92 15 5 H -0.27 -10.09 7.11 99.48 0.71 -9.39 15 6 H -0.27 -10.08 7.11 99.48 0.71 -9.38 15 7 C -0.33 -17.72 9.68 84.17 0.81 -16.90 15 8 H 0.10 5.36 7.15 -2.91 -0.02 5.33 15 9 N -0.53 -26.85 5.23 -309.80 -1.62 -28.47 15 10 C 0.45 22.31 7.69 86.74 0.67 22.98 15 11 O -0.61 -32.92 13.09 -4.06 -0.05 -32.97 15 12 C -0.04 -1.57 5.94 -19.69 -0.12 -1.69 15 13 C -0.15 -5.74 9.35 22.72 0.21 -5.53 15 14 C 0.20 6.91 7.26 85.06 0.62 7.53 15 15 Cl -0.01 -0.35 29.08 -2.72 -0.08 -0.43 15 16 N -0.48 -16.28 10.26 -179.67 -1.84 -18.12 15 17 C 0.12 4.18 6.61 40.32 0.27 4.44 15 18 C -0.11 -2.66 9.98 22.37 0.22 -2.44 15 19 C -0.08 -1.56 9.94 22.03 0.22 -1.34 15 20 C -0.11 -2.82 9.96 22.08 0.22 -2.60 15 21 C -0.12 -4.25 9.25 22.25 0.21 -4.05 15 22 C -0.09 -3.57 5.76 -21.09 -0.12 -3.69 15 23 H 0.29 13.35 8.31 -92.71 -0.77 12.58 15 24 H 0.40 19.19 6.06 -92.71 -0.56 18.62 15 25 H 0.15 5.40 6.55 -2.91 -0.02 5.38 15 26 H 0.16 3.12 8.06 -2.91 -0.02 3.09 15 27 H 0.18 1.92 8.06 -2.91 -0.02 1.90 15 28 H 0.16 2.93 8.06 -2.91 -0.02 2.91 15 29 H 0.15 6.18 4.98 -2.91 -0.01 6.17 15 Total: -1.00 -61.94 275.72 3.05 -58.89 By element: Atomic # 1 Polarization: 26.64 SS G_CDS: 0.66 Total: 27.30 kcal Atomic # 6 Polarization: -6.73 SS G_CDS: 3.68 Total: -3.06 kcal Atomic # 7 Polarization: -88.16 SS G_CDS: -3.18 Total: -91.34 kcal Atomic # 8 Polarization: -32.92 SS G_CDS: -0.05 Total: -32.97 kcal Atomic # 14 Polarization: 39.58 SS G_CDS: 2.03 Total: 41.61 kcal Atomic # 17 Polarization: -0.35 SS G_CDS: -0.08 Total: -0.43 kcal Total: -61.94 3.05 -58.89 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040809013.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.014 kcal (2) G-P(sol) polarization free energy of solvation -61.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds