Wall clock time and date at job start Mon Mar 30 2020 01:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35947 * 116.99618 * 2 1 4 4 C 1.38996 * 119.89421 * 0.02562 * 3 2 1 5 5 C 1.39003 * 120.43200 * 180.02562 * 4 3 2 6 6 O 1.35940 * 119.89206 * 180.02562 * 5 4 3 7 7 C 1.42897 * 117.00390 * 359.97438 * 6 5 4 8 8 C 1.38238 * 120.21535 * 359.97438 * 5 4 3 9 9 Cl 1.73601 * 120.11066 * 179.97438 * 8 5 4 10 10 C 1.40803 * 119.77668 * 0.02562 * 8 5 4 11 11 C 1.41307 * 120.20663 * 180.02562 * 10 8 5 12 12 H 1.07998 * 120.00091 * 41.88198 * 11 10 8 13 13 C 1.39922 * 119.99745 * 221.87390 * 11 10 8 14 14 N 1.30853 * 119.99702 * 212.41076 * 13 11 10 15 15 Si 1.86800 * 120.00116 * 32.41385 * 13 11 10 16 16 H 1.48502 * 109.46929 * 95.84397 * 15 13 11 17 17 H 1.48499 * 109.47018 * 215.84521 * 15 13 11 18 18 H 1.48498 * 109.46927 * 335.85036 * 15 13 11 19 19 C 1.38243 * 119.89215 * 179.72783 * 3 2 1 20 20 Cl 1.73596 * 120.10707 * 359.97438 * 19 3 2 21 21 H 1.08995 * 109.47173 * 60.00055 * 1 2 3 22 22 H 1.09001 * 109.46396 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.46675 * 299.99878 * 1 2 3 24 24 H 1.07999 * 119.78672 * 359.97438 * 4 3 2 25 25 H 1.09011 * 109.46614 * 60.00005 * 7 6 5 26 26 H 1.08998 * 109.47544 * 179.97438 * 7 6 5 27 27 H 1.08994 * 109.47364 * 300.00433 * 7 6 5 28 28 H 0.97003 * 119.99617 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2869 2.3756 0.0005 5 6 1.9062 3.6200 0.0000 6 8 1.1530 4.7517 0.0011 7 6 -0.2664 4.5863 0.0021 8 6 3.2856 3.7106 -0.0005 9 17 4.0563 5.2662 -0.0019 10 6 4.0635 2.5369 -0.0011 11 6 5.4742 2.6189 -0.0011 12 1 5.9729 3.3452 0.6236 13 6 6.2249 1.7591 -0.8104 14 7 7.4059 1.3556 -0.4172 15 14 5.5412 1.1873 -2.4520 16 1 6.0622 2.0586 -3.5357 17 1 5.9593 -0.2158 -2.7006 18 1 4.0584 1.2646 -2.4246 19 6 3.4268 1.2812 0.0057 20 17 4.3724 -0.1747 0.0135 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3632 -1.0277 -0.0005 23 1 -0.3632 0.5138 0.8900 24 1 0.2087 2.3130 0.0005 25 1 -0.5670 4.0334 0.8923 26 1 -0.7463 5.5649 0.0034 27 1 -0.5686 4.0342 -0.8877 28 1 7.9265 0.7599 -0.9784 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044126447.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:36 Heat of formation + Delta-G solvation = -84.720055 kcal Electronic energy + Delta-G solvation = -17484.987191 eV Core-core repulsion = 14359.898054 eV Total energy + Delta-G solvation = -3125.089136 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 276.011 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.17305 -39.65023 -38.11637 -37.00318 -36.33730 -35.24715 -31.85349 -30.68527 -28.90981 -27.19054 -26.89692 -23.15818 -22.48859 -20.15738 -18.62700 -17.83605 -17.29423 -17.04159 -16.89343 -16.67842 -16.28838 -15.50052 -15.03727 -14.48282 -14.37844 -14.22758 -13.56805 -13.51013 -13.10580 -12.78299 -12.70536 -12.31315 -12.27472 -12.12242 -12.05123 -11.79584 -11.30226 -11.21863 -10.91866 -10.64860 -9.37096 -8.98796 -8.63318 -6.57267 0.52899 0.60047 1.28808 1.31805 1.42852 1.62039 1.94407 2.15153 2.38074 2.44603 2.57574 3.13519 4.10882 4.23586 4.37674 4.44010 4.46878 4.55735 4.66129 4.73540 4.76157 4.94187 5.09251 5.28799 5.42431 5.58251 6.16100 6.33108 6.44879 6.65189 6.68552 8.04411 Molecular weight = 276.01amu Principal moments of inertia in cm(-1) A = 0.016409 B = 0.011074 C = 0.007381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.999927 B = 2527.806718 C = 3792.461458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.328 6.328 3 C 0.199 3.801 4 C -0.370 4.370 5 C 0.200 3.800 6 O -0.324 6.324 7 C 0.019 3.981 8 C -0.196 4.196 9 Cl -0.084 7.084 10 C 0.137 3.863 11 C -0.467 4.467 12 H 0.082 0.918 13 C 0.099 3.901 14 N -0.794 5.794 15 Si 0.915 3.085 16 H -0.268 1.268 17 H -0.263 1.263 18 H -0.249 1.249 19 C -0.203 4.203 20 Cl -0.081 7.081 21 H 0.063 0.937 22 H 0.121 0.879 23 H 0.065 0.935 24 H 0.164 0.836 25 H 0.064 0.936 26 H 0.121 0.879 27 H 0.063 0.937 28 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.939 -0.267 -1.451 14.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.241 6.241 3 C 0.152 3.848 4 C -0.390 4.390 5 C 0.153 3.847 6 O -0.238 6.238 7 C -0.076 4.076 8 C -0.225 4.225 9 Cl -0.055 7.055 10 C 0.133 3.867 11 C -0.493 4.493 12 H 0.100 0.900 13 C -0.124 4.124 14 N -0.416 5.416 15 Si 0.737 3.263 16 H -0.195 1.195 17 H -0.187 1.187 18 H -0.172 1.172 19 C -0.231 4.231 20 Cl -0.052 7.052 21 H 0.082 0.918 22 H 0.139 0.861 23 H 0.084 0.916 24 H 0.181 0.819 25 H 0.082 0.918 26 H 0.140 0.860 27 H 0.082 0.918 28 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -13.395 -0.377 -1.430 13.476 hybrid contribution 0.123 -0.251 -0.472 0.549 sum -13.271 -0.628 -1.902 13.422 Atomic orbital electron populations 1.23352 0.76511 1.05433 1.02261 1.86118 1.23578 1.26197 1.88204 1.18281 0.89517 0.84921 0.92070 1.20690 1.00375 0.89294 1.28666 1.18261 0.88591 0.85767 0.92056 1.86117 1.20657 1.28810 1.88170 1.23345 0.76764 1.05276 1.02180 1.20060 0.89018 0.86237 1.27172 1.98205 1.82279 1.27205 1.97853 1.16805 0.93336 0.87612 0.88947 1.19094 0.89432 1.16998 1.23808 0.90044 1.26383 0.94089 0.90799 1.01177 1.69804 1.12313 1.22784 1.36711 0.86058 0.82180 0.78730 0.79305 1.19486 1.18742 1.17244 1.20072 0.88143 0.86971 1.27958 1.98174 1.73166 1.36719 1.97170 0.91799 0.86104 0.91593 0.81855 0.91764 0.86038 0.91836 0.89266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 9.81 113.37 1.11 1.53 15 2 O -0.33 -11.76 9.94 -92.95 -0.92 -12.68 15 3 C 0.20 8.26 6.67 22.45 0.15 8.41 15 4 C -0.37 -13.49 8.04 22.64 0.18 -13.31 15 5 C 0.20 8.11 6.67 22.45 0.15 8.26 15 6 O -0.32 -11.21 9.93 -92.88 -0.92 -12.13 15 7 C 0.02 0.40 9.81 113.37 1.11 1.51 15 8 C -0.20 -9.24 6.39 22.90 0.15 -9.09 15 9 Cl -0.08 -3.72 27.41 -2.72 -0.07 -3.80 15 10 C 0.14 6.98 4.61 -21.27 -0.10 6.88 15 11 C -0.47 -25.30 8.33 23.43 0.20 -25.11 15 12 H 0.08 4.72 7.79 -2.91 -0.02 4.70 15 13 C 0.10 5.15 3.89 85.25 0.33 5.49 15 14 N -0.79 -41.53 13.93 21.82 0.30 -41.22 15 15 Si 0.91 42.53 24.90 68.60 1.71 44.23 15 16 H -0.27 -11.96 7.11 99.48 0.71 -11.26 15 17 H -0.26 -11.59 7.11 99.48 0.71 -10.88 15 18 H -0.25 -12.00 6.13 99.48 0.61 -11.39 15 19 C -0.20 -9.77 4.73 22.90 0.11 -9.66 15 20 Cl -0.08 -3.81 23.01 -2.72 -0.06 -3.88 15 21 H 0.06 1.27 7.65 -2.39 -0.02 1.25 15 22 H 0.12 2.01 8.14 -2.39 -0.02 1.99 15 23 H 0.07 1.30 7.65 -2.39 -0.02 1.28 15 24 H 0.16 4.47 4.47 -2.91 -0.01 4.46 15 25 H 0.06 1.23 7.65 -2.38 -0.02 1.21 15 26 H 0.12 1.92 8.14 -2.39 -0.02 1.90 15 27 H 0.06 1.22 7.65 -2.39 -0.02 1.21 15 28 H 0.30 14.04 8.30 -92.71 -0.77 13.27 15 Total: -1.00 -61.35 265.83 4.52 -56.82 By element: Atomic # 1 Polarization: -3.36 SS G_CDS: 1.11 Total: -2.25 kcal Atomic # 6 Polarization: -28.48 SS G_CDS: 3.39 Total: -25.09 kcal Atomic # 7 Polarization: -41.53 SS G_CDS: 0.30 Total: -41.22 kcal Atomic # 8 Polarization: -22.97 SS G_CDS: -1.85 Total: -24.81 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 1.71 Total: 44.23 kcal Atomic # 17 Polarization: -7.54 SS G_CDS: -0.14 Total: -7.67 kcal Total: -61.35 4.52 -56.82 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044126447.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.897 kcal (2) G-P(sol) polarization free energy of solvation -61.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds