Wall clock time and date at job start Mon Mar 30 2020 01:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52991 * 109.47271 * 2 1 4 4 N 1.46504 * 109.47533 * 179.97438 * 3 2 1 5 5 C 1.36939 * 120.00075 * 269.49802 * 4 3 2 6 6 H 1.08006 * 119.99490 * 325.91249 * 5 4 3 7 7 C 1.38808 * 120.00350 * 145.91056 * 5 4 3 8 8 N 1.31621 * 119.99688 * 336.76144 * 7 5 4 9 9 Si 1.86802 * 120.00074 * 156.75923 * 7 5 4 10 10 H 1.48496 * 109.47073 * 89.99888 * 9 7 5 11 11 H 1.48501 * 109.46826 * 210.00147 * 9 7 5 12 12 H 1.48504 * 109.47027 * 330.00003 * 9 7 5 13 13 C 1.46502 * 119.99982 * 89.49158 * 4 3 2 14 14 C 1.50695 * 109.46837 * 90.00316 * 13 4 3 15 15 C 1.38234 * 119.99976 * 269.72079 * 14 13 4 16 16 C 1.38241 * 119.99676 * 179.76339 * 15 14 13 17 17 C 1.38224 * 120.00332 * 0.52067 * 16 15 14 18 18 C 1.50701 * 120.00648 * 179.72194 * 17 16 15 19 19 C 1.52997 * 109.46978 * 240.02166 * 18 17 16 20 20 C 1.53004 * 109.46585 * 0.02562 * 18 17 16 21 21 C 1.52990 * 109.47642 * 120.01334 * 18 17 16 22 22 C 1.38246 * 119.99903 * 359.73340 * 17 16 15 23 23 C 1.38230 * 119.99632 * 0.02562 * 22 17 16 24 24 H 1.09008 * 109.47004 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47319 * 299.99916 * 1 2 3 26 26 H 1.08994 * 109.47082 * 60.00182 * 1 2 3 27 27 H 1.09007 * 109.47321 * 240.00078 * 2 1 3 28 28 H 1.08999 * 109.47255 * 120.00516 * 2 1 3 29 29 H 1.09007 * 109.47224 * 60.00237 * 3 2 1 30 30 H 1.08999 * 109.47402 * 300.00426 * 3 2 1 31 31 H 0.97004 * 119.99673 * 179.97438 * 8 7 5 32 32 H 1.09001 * 109.46726 * 330.00364 * 13 4 3 33 33 H 1.08997 * 109.46748 * 209.99992 * 13 4 3 34 34 H 1.08001 * 120.00098 * 0.02562 * 15 14 13 35 35 H 1.08002 * 119.99441 * 180.23336 * 16 15 14 36 36 H 1.09000 * 109.47575 * 59.99171 * 19 18 17 37 37 H 1.09001 * 109.46951 * 179.97438 * 19 18 17 38 38 H 1.09001 * 109.47046 * 299.99410 * 19 18 17 39 39 H 1.09006 * 109.46824 * 60.00197 * 20 18 17 40 40 H 1.09001 * 109.46965 * 180.02562 * 20 18 17 41 41 H 1.09000 * 109.47140 * 300.00321 * 20 18 17 42 42 H 1.09002 * 109.47197 * 60.00210 * 21 18 17 43 43 H 1.09001 * 109.47290 * 180.02562 * 21 18 17 44 44 H 1.08999 * 109.47562 * 300.00790 * 21 18 17 45 45 H 1.07997 * 119.99894 * 179.97438 * 22 17 16 46 46 H 1.08006 * 119.99768 * 179.97438 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1892 1.4531 1.1868 6 1 3.7879 1.9849 2.0369 7 6 5.3984 0.7803 1.2966 8 7 5.6758 -0.2124 0.4782 9 14 6.6319 1.2840 2.6060 10 1 6.3750 0.5149 3.8500 11 1 8.0079 1.0015 2.1244 12 1 6.4932 2.7361 2.8842 13 6 4.2380 1.4311 -1.2678 14 6 4.4894 2.8479 -1.7154 15 6 3.5709 3.4903 -2.5244 16 6 3.7991 4.7917 -2.9310 17 6 4.9509 5.4469 -2.5374 18 6 5.2027 6.8635 -2.9858 19 6 6.5015 6.9197 -3.7925 20 6 4.0389 7.3365 -3.8591 21 6 5.3232 7.7723 -1.7610 22 6 5.8719 4.8026 -1.7327 23 6 5.6413 3.5030 -1.3220 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.6767 1.9563 0.8901 30 1 1.6766 1.9563 -0.8899 31 1 6.5210 -0.6823 0.5547 32 1 3.6492 0.9104 -2.0230 33 1 5.1904 0.9185 -1.1323 34 1 2.6730 2.9770 -2.8353 35 1 3.0797 5.2949 -3.5600 36 1 6.4157 6.2722 -4.6651 37 1 6.6835 7.9442 -4.1171 38 1 7.3306 6.5828 -3.1702 39 1 3.1136 7.2963 -3.2842 40 1 4.2212 8.3609 -4.1838 41 1 3.9528 6.6889 -4.7317 42 1 6.1522 7.4355 -1.1387 43 1 5.5049 8.7970 -2.0854 44 1 4.3979 7.7322 -1.1863 45 1 6.7720 5.3143 -1.4255 46 1 6.3611 2.9995 -0.6936 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044373600.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:13 Heat of formation + Delta-G solvation = 16.052831 kcal Electronic energy + Delta-G solvation = -21874.950550 eV Core-core repulsion = 18957.005979 eV Total energy + Delta-G solvation = -2917.944571 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.38143 -36.78197 -35.35191 -32.86763 -31.06759 -30.45662 -29.48736 -27.23199 -27.16192 -25.61601 -25.44147 -22.34777 -21.65379 -21.10961 -19.81141 -18.77944 -16.85417 -15.91549 -14.98552 -14.65095 -14.31634 -14.20483 -14.13665 -13.84372 -13.51589 -13.33822 -13.17109 -12.86224 -12.65379 -12.44718 -11.99647 -11.76152 -11.67712 -11.58121 -11.30801 -11.12155 -11.04750 -10.97648 -10.79507 -10.71418 -10.56024 -10.35122 -10.17938 -10.13296 -9.85610 -9.80346 -9.64596 -8.50016 -8.20418 -7.77573 -6.61633 -5.79847 -3.30777 2.07529 2.12768 3.34611 3.43066 3.47426 4.40303 4.53201 4.81811 4.91804 5.11743 5.31519 5.47788 5.56252 5.59421 5.60623 5.62528 5.66963 5.77337 5.81837 5.85672 5.91308 5.93276 5.98849 6.03666 6.11217 6.16758 6.18114 6.32169 6.34468 6.39756 6.42883 6.52744 6.59152 6.64267 6.70214 6.82135 6.86978 7.08008 7.19006 7.23261 7.28838 7.49444 7.71529 7.80644 7.82955 8.50280 9.17389 9.81778 10.38465 11.20544 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.015063 B = 0.005771 C = 0.004564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.396666 B = 4850.558090 C = 6133.928919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.140 4.140 3 C 0.149 3.851 4 N -0.576 5.576 5 C -0.249 4.249 6 H 0.060 0.940 7 C 0.010 3.990 8 N -0.885 5.885 9 Si 0.888 3.112 10 H -0.286 1.286 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.170 3.830 14 C -0.070 4.070 15 C -0.123 4.123 16 C -0.128 4.128 17 C -0.096 4.096 18 C -0.025 4.025 19 C -0.136 4.136 20 C -0.140 4.140 21 C -0.137 4.137 22 C -0.121 4.121 23 C -0.097 4.097 24 H 0.042 0.958 25 H 0.046 0.954 26 H 0.044 0.956 27 H 0.050 0.950 28 H 0.062 0.938 29 H 0.040 0.960 30 H 0.032 0.968 31 H 0.254 0.746 32 H 0.031 0.969 33 H 0.107 0.893 34 H 0.109 0.891 35 H 0.112 0.888 36 H 0.054 0.946 37 H 0.051 0.949 38 H 0.056 0.944 39 H 0.057 0.943 40 H 0.051 0.949 41 H 0.056 0.944 42 H 0.056 0.944 43 H 0.051 0.949 44 H 0.055 0.945 45 H 0.108 0.892 46 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.598 10.813 -7.736 13.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.180 4.180 3 C 0.023 3.977 4 N -0.294 5.294 5 C -0.378 4.378 6 H 0.078 0.922 7 C -0.190 4.190 8 N -0.528 5.528 9 Si 0.717 3.283 10 H -0.213 1.213 11 H -0.214 1.214 12 H -0.203 1.203 13 C 0.044 3.956 14 C -0.073 4.073 15 C -0.141 4.141 16 C -0.146 4.146 17 C -0.096 4.096 18 C -0.025 4.025 19 C -0.193 4.193 20 C -0.197 4.197 21 C -0.194 4.194 22 C -0.139 4.139 23 C -0.116 4.116 24 H 0.061 0.939 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.069 0.931 28 H 0.081 0.919 29 H 0.059 0.941 30 H 0.051 0.949 31 H 0.064 0.936 32 H 0.049 0.951 33 H 0.124 0.876 34 H 0.127 0.873 35 H 0.130 0.870 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.070 0.930 41 H 0.076 0.924 42 H 0.075 0.925 43 H 0.070 0.930 44 H 0.074 0.926 45 H 0.126 0.874 46 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -2.463 10.679 -7.718 13.404 hybrid contribution 0.671 0.165 0.773 1.037 sum -1.792 10.844 -6.945 13.002 Atomic orbital electron populations 1.21755 0.97825 1.00274 1.00649 1.22083 0.92979 1.00860 1.02067 1.20924 0.85181 0.93360 0.98205 1.43783 0.99307 1.84544 1.01807 1.19032 1.03024 1.25322 0.90461 0.92250 1.25011 1.00648 0.95272 0.98085 1.69983 1.23715 1.19270 1.39806 0.86525 0.81168 0.78834 0.81756 1.21285 1.21405 1.20291 1.20074 1.00693 0.88625 0.86212 1.21208 0.92618 1.00283 0.93218 1.21018 0.99056 0.94686 0.99386 1.20967 0.97220 0.95031 1.01388 1.19504 0.95541 0.94720 0.99878 1.19400 0.95592 0.92286 0.95238 1.21871 0.96568 1.01011 0.99894 1.21928 0.97970 1.00363 0.99477 1.21873 1.02161 0.98209 0.97158 1.20865 0.98851 0.95187 0.98979 1.21062 0.97761 0.94084 0.98651 0.93899 0.93451 0.93712 0.93075 0.91895 0.94115 0.94919 0.93552 0.95063 0.87557 0.87339 0.86957 0.92659 0.92963 0.92514 0.92400 0.92984 0.92447 0.92494 0.92979 0.92585 0.87435 0.86497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 9.91 37.16 0.37 -1.93 16 2 C -0.14 -2.76 6.26 -26.74 -0.17 -2.93 16 3 C 0.15 3.16 5.67 -4.04 -0.02 3.14 16 4 N -0.58 -14.08 2.43 -174.61 -0.43 -14.50 16 5 C -0.25 -6.67 9.48 -15.06 -0.14 -6.82 16 6 H 0.06 1.62 7.93 -52.48 -0.42 1.21 16 7 C 0.01 0.26 4.94 -17.43 -0.09 0.17 16 8 N -0.88 -24.75 11.34 55.49 0.63 -24.12 16 9 Si 0.89 21.28 29.61 -169.99 -5.03 16.25 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 13 C 0.17 3.96 5.42 -5.19 -0.03 3.93 16 14 C -0.07 -1.47 5.46 -104.63 -0.57 -2.04 16 15 C -0.12 -2.25 9.70 -39.58 -0.38 -2.63 16 16 C -0.13 -2.08 8.98 -39.59 -0.36 -2.44 16 17 C -0.10 -1.52 4.76 -104.62 -0.50 -2.02 16 18 C -0.03 -0.32 0.85 -155.66 -0.13 -0.45 16 19 C -0.14 -1.55 8.29 37.16 0.31 -1.24 16 20 C -0.14 -1.53 7.13 37.16 0.27 -1.27 16 21 C -0.14 -1.63 8.29 37.15 0.31 -1.32 16 22 C -0.12 -2.12 8.71 -39.58 -0.34 -2.46 16 23 C -0.10 -1.98 9.70 -39.58 -0.38 -2.37 16 24 H 0.04 0.61 8.14 -51.92 -0.42 0.19 16 25 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 29 H 0.04 0.86 8.03 -51.93 -0.42 0.45 16 30 H 0.03 0.64 8.08 -51.93 -0.42 0.22 16 31 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 32 H 0.03 0.70 8.01 -51.93 -0.42 0.28 16 33 H 0.11 2.79 5.28 -51.93 -0.27 2.52 16 34 H 0.11 1.85 8.06 -52.49 -0.42 1.43 16 35 H 0.11 1.56 5.90 -52.49 -0.31 1.25 16 36 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.66 7.39 -51.93 -0.38 0.27 16 39 H 0.06 0.64 7.52 -51.93 -0.39 0.25 16 40 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.06 0.62 7.51 -51.93 -0.39 0.23 16 42 H 0.06 0.70 7.39 -51.93 -0.38 0.31 16 43 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.11 1.69 7.10 -52.49 -0.37 1.32 16 46 H 0.12 2.57 8.06 -52.48 -0.42 2.15 16 LS Contribution 364.25 15.07 5.49 5.49 Total: -1.00 -27.70 364.25 -9.59 -37.29 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -8.38 Total: 2.26 kcal Atomic # 6 Polarization: -20.80 SS G_CDS: -1.87 Total: -22.67 kcal Atomic # 7 Polarization: -38.83 SS G_CDS: 0.20 Total: -38.62 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.03 Total: 16.25 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -27.70 -9.59 -37.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044373600.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.347 kcal (2) G-P(sol) polarization free energy of solvation -27.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds