Wall clock time and date at job start Mon Mar 30 2020 01:26:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52991 * 109.47271 * 2 1 4 4 N 1.46504 * 109.47533 * 179.97438 * 3 2 1 5 5 C 1.36939 * 120.00075 * 269.49802 * 4 3 2 6 6 H 1.08006 * 119.99490 * 325.91249 * 5 4 3 7 7 C 1.38808 * 120.00350 * 145.91056 * 5 4 3 8 8 N 1.31621 * 119.99688 * 336.76144 * 7 5 4 9 9 Si 1.86802 * 120.00074 * 156.75923 * 7 5 4 10 10 H 1.48496 * 109.47073 * 89.99888 * 9 7 5 11 11 H 1.48501 * 109.46826 * 210.00147 * 9 7 5 12 12 H 1.48504 * 109.47027 * 330.00003 * 9 7 5 13 13 C 1.46502 * 119.99982 * 89.49158 * 4 3 2 14 14 C 1.50695 * 109.46837 * 90.00316 * 13 4 3 15 15 C 1.38234 * 119.99976 * 269.72079 * 14 13 4 16 16 C 1.38241 * 119.99676 * 179.76339 * 15 14 13 17 17 C 1.38224 * 120.00332 * 0.52067 * 16 15 14 18 18 C 1.50701 * 120.00648 * 179.72194 * 17 16 15 19 19 C 1.52997 * 109.46978 * 240.02166 * 18 17 16 20 20 C 1.53004 * 109.46585 * 0.02562 * 18 17 16 21 21 C 1.52990 * 109.47642 * 120.01334 * 18 17 16 22 22 C 1.38246 * 119.99903 * 359.73340 * 17 16 15 23 23 C 1.38230 * 119.99632 * 0.02562 * 22 17 16 24 24 H 1.09008 * 109.47004 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47319 * 299.99916 * 1 2 3 26 26 H 1.08994 * 109.47082 * 60.00182 * 1 2 3 27 27 H 1.09007 * 109.47321 * 240.00078 * 2 1 3 28 28 H 1.08999 * 109.47255 * 120.00516 * 2 1 3 29 29 H 1.09007 * 109.47224 * 60.00237 * 3 2 1 30 30 H 1.08999 * 109.47402 * 300.00426 * 3 2 1 31 31 H 0.97004 * 119.99673 * 179.97438 * 8 7 5 32 32 H 1.09001 * 109.46726 * 330.00364 * 13 4 3 33 33 H 1.08997 * 109.46748 * 209.99992 * 13 4 3 34 34 H 1.08001 * 120.00098 * 0.02562 * 15 14 13 35 35 H 1.08002 * 119.99441 * 180.23336 * 16 15 14 36 36 H 1.09000 * 109.47575 * 59.99171 * 19 18 17 37 37 H 1.09001 * 109.46951 * 179.97438 * 19 18 17 38 38 H 1.09001 * 109.47046 * 299.99410 * 19 18 17 39 39 H 1.09006 * 109.46824 * 60.00197 * 20 18 17 40 40 H 1.09001 * 109.46965 * 180.02562 * 20 18 17 41 41 H 1.09000 * 109.47140 * 300.00321 * 20 18 17 42 42 H 1.09002 * 109.47197 * 60.00210 * 21 18 17 43 43 H 1.09001 * 109.47290 * 180.02562 * 21 18 17 44 44 H 1.08999 * 109.47562 * 300.00790 * 21 18 17 45 45 H 1.07997 * 119.99894 * 179.97438 * 22 17 16 46 46 H 1.08006 * 119.99768 * 179.97438 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1892 1.4531 1.1868 6 1 3.7879 1.9849 2.0369 7 6 5.3984 0.7803 1.2966 8 7 5.6758 -0.2124 0.4782 9 14 6.6319 1.2840 2.6060 10 1 6.3750 0.5149 3.8500 11 1 8.0079 1.0015 2.1244 12 1 6.4932 2.7361 2.8842 13 6 4.2380 1.4311 -1.2678 14 6 4.4894 2.8479 -1.7154 15 6 3.5709 3.4903 -2.5244 16 6 3.7991 4.7917 -2.9310 17 6 4.9509 5.4469 -2.5374 18 6 5.2027 6.8635 -2.9858 19 6 6.5015 6.9197 -3.7925 20 6 4.0389 7.3365 -3.8591 21 6 5.3232 7.7723 -1.7610 22 6 5.8719 4.8026 -1.7327 23 6 5.6413 3.5030 -1.3220 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.6767 1.9563 0.8901 30 1 1.6766 1.9563 -0.8899 31 1 6.5210 -0.6823 0.5547 32 1 3.6492 0.9104 -2.0230 33 1 5.1904 0.9185 -1.1323 34 1 2.6730 2.9770 -2.8353 35 1 3.0797 5.2949 -3.5600 36 1 6.4157 6.2722 -4.6651 37 1 6.6835 7.9442 -4.1171 38 1 7.3306 6.5828 -3.1702 39 1 3.1136 7.2963 -3.2842 40 1 4.2212 8.3609 -4.1838 41 1 3.9528 6.6889 -4.7317 42 1 6.1522 7.4355 -1.1387 43 1 5.5049 8.7970 -2.0854 44 1 4.3979 7.7322 -1.1863 45 1 6.7720 5.3143 -1.4255 46 1 6.3611 2.9995 -0.6936 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044373600.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:12 Heat of formation + Delta-G solvation = 5.183440 kcal Electronic energy + Delta-G solvation = -21875.421883 eV Core-core repulsion = 18957.005979 eV Total energy + Delta-G solvation = -2918.415903 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.70548 -38.32212 -36.78607 -34.60955 -32.84975 -31.85321 -31.05371 -28.15802 -28.05865 -27.34245 -27.15299 -23.98906 -23.06068 -22.59315 -21.51382 -19.97138 -18.77366 -17.22649 -16.81886 -16.13877 -15.97067 -15.69989 -15.51716 -15.09631 -14.95426 -14.85977 -14.45989 -14.19574 -14.09925 -13.53018 -13.48965 -13.19330 -12.84127 -12.77253 -12.74640 -12.55673 -12.50567 -12.48822 -12.32149 -12.14677 -12.01539 -11.84331 -11.77823 -11.70608 -11.37816 -11.32112 -11.24746 -10.53428 -9.64712 -9.23039 -8.60521 -7.84092 -5.38948 0.64195 0.67738 1.40064 1.43714 1.52647 2.49100 2.98754 3.24811 3.76757 3.85743 3.90989 4.19160 4.23435 4.27208 4.27851 4.35481 4.46447 4.49402 4.64798 4.68986 4.74238 4.81680 4.82254 4.85040 4.94392 4.95175 4.97284 5.05825 5.07233 5.14360 5.17271 5.24599 5.26189 5.33578 5.41173 5.45123 5.45254 5.49200 5.59044 5.60840 5.73076 5.81881 5.85827 6.07999 6.31297 6.47662 7.15114 7.86240 8.37577 9.12763 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.015063 B = 0.005771 C = 0.004564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.396666 B = 4850.558090 C = 6133.928919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.131 4.131 3 C 0.147 3.853 4 N -0.590 5.590 5 C -0.256 4.256 6 H 0.050 0.950 7 C -0.031 4.031 8 N -0.912 5.912 9 Si 0.942 3.058 10 H -0.283 1.283 11 H -0.289 1.289 12 H -0.276 1.276 13 C 0.177 3.823 14 C -0.093 4.093 15 C -0.125 4.125 16 C -0.123 4.123 17 C -0.086 4.086 18 C -0.026 4.026 19 C -0.135 4.135 20 C -0.140 4.140 21 C -0.137 4.137 22 C -0.122 4.122 23 C -0.120 4.120 24 H 0.056 0.944 25 H 0.055 0.945 26 H 0.063 0.937 27 H 0.037 0.963 28 H 0.030 0.970 29 H 0.038 0.962 30 H 0.051 0.949 31 H 0.251 0.749 32 H 0.032 0.968 33 H 0.073 0.927 34 H 0.121 0.879 35 H 0.145 0.855 36 H 0.051 0.949 37 H 0.075 0.925 38 H 0.049 0.951 39 H 0.056 0.944 40 H 0.072 0.928 41 H 0.060 0.940 42 H 0.048 0.952 43 H 0.076 0.924 44 H 0.047 0.953 45 H 0.122 0.878 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.746 13.500 -9.040 16.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.171 4.171 3 C 0.022 3.978 4 N -0.310 5.310 5 C -0.386 4.386 6 H 0.067 0.933 7 C -0.228 4.228 8 N -0.556 5.556 9 Si 0.770 3.230 10 H -0.210 1.210 11 H -0.215 1.215 12 H -0.201 1.201 13 C 0.051 3.949 14 C -0.095 4.095 15 C -0.144 4.144 16 C -0.140 4.140 17 C -0.086 4.086 18 C -0.026 4.026 19 C -0.193 4.193 20 C -0.197 4.197 21 C -0.194 4.194 22 C -0.140 4.140 23 C -0.139 4.139 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.082 0.918 27 H 0.055 0.945 28 H 0.048 0.952 29 H 0.056 0.944 30 H 0.070 0.930 31 H 0.060 0.940 32 H 0.050 0.950 33 H 0.091 0.909 34 H 0.139 0.861 35 H 0.162 0.838 36 H 0.071 0.929 37 H 0.094 0.906 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.091 0.909 41 H 0.079 0.921 42 H 0.067 0.933 43 H 0.095 0.905 44 H 0.066 0.934 45 H 0.140 0.860 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.627 13.378 -9.027 16.542 hybrid contribution 1.008 -0.591 1.111 1.612 sum -2.619 12.787 -7.917 15.266 Atomic orbital electron populations 1.21655 0.94068 1.01703 1.02000 1.21925 0.96199 0.99211 0.99739 1.21037 0.83518 0.94352 0.98890 1.43971 1.00646 1.84893 1.01445 1.19142 1.03615 1.24729 0.91156 0.93254 1.25557 1.01912 0.95362 0.99963 1.70100 1.23789 1.20328 1.41423 0.85679 0.79190 0.78379 0.79740 1.20997 1.21483 1.20112 1.19832 0.98871 0.90264 0.85884 1.20935 0.94036 0.99106 0.95466 1.21146 0.98797 0.95667 0.98756 1.21326 0.97776 0.94098 1.00813 1.19962 0.94408 0.96384 0.97864 1.19509 0.97131 0.89930 0.96043 1.21867 0.95535 1.02444 0.99405 1.21929 0.96933 1.01702 0.99100 1.21876 1.01420 0.99440 0.96642 1.21011 0.99954 0.94003 0.99047 1.20957 0.97645 0.95627 0.99716 0.92485 0.92576 0.91831 0.94463 0.95150 0.94371 0.93031 0.93969 0.94978 0.90920 0.86106 0.83762 0.92943 0.90641 0.93209 0.92472 0.90878 0.92115 0.93334 0.90540 0.93421 0.85976 0.89411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.01 9.91 71.98 0.71 -3.29 16 2 C -0.13 -5.20 6.26 30.59 0.19 -5.01 16 3 C 0.15 6.27 5.67 86.38 0.49 6.76 16 4 N -0.59 -29.78 2.43 -706.34 -1.72 -31.50 16 5 C -0.26 -14.25 9.48 84.03 0.80 -13.45 16 6 H 0.05 2.79 7.93 -2.91 -0.02 2.77 16 7 C -0.03 -1.72 4.94 84.86 0.42 -1.30 16 8 N -0.91 -53.39 11.34 21.65 0.25 -53.14 16 9 Si 0.94 45.26 29.61 68.60 2.03 47.29 16 10 H -0.28 -13.39 7.11 99.48 0.71 -12.69 16 11 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 12 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 13 C 0.18 8.62 5.42 85.63 0.46 9.08 16 14 C -0.09 -3.96 5.46 -19.87 -0.11 -4.07 16 15 C -0.12 -4.44 9.70 22.27 0.22 -4.23 16 16 C -0.12 -3.67 8.98 22.27 0.20 -3.47 16 17 C -0.09 -2.53 4.76 -19.87 -0.09 -2.63 16 18 C -0.03 -0.57 0.85 -52.93 -0.05 -0.61 16 19 C -0.14 -2.64 8.29 71.98 0.60 -2.04 16 20 C -0.14 -2.45 7.13 71.98 0.51 -1.94 16 21 C -0.14 -2.84 8.29 71.98 0.60 -2.24 16 22 C -0.12 -4.23 8.71 22.27 0.19 -4.03 16 23 C -0.12 -5.11 9.70 22.27 0.22 -4.89 16 24 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 25 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.04 1.55 8.14 -2.38 -0.02 1.53 16 28 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.04 1.62 8.03 -2.38 -0.02 1.60 16 30 H 0.05 1.98 8.08 -2.39 -0.02 1.96 16 31 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 32 H 0.03 1.49 8.01 -2.39 -0.02 1.47 16 33 H 0.07 4.06 5.28 -2.39 -0.01 4.05 16 34 H 0.12 3.92 8.06 -2.91 -0.02 3.90 16 35 H 0.14 3.41 5.90 -2.91 -0.02 3.40 16 36 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.05 1.03 7.39 -2.39 -0.02 1.02 16 39 H 0.06 1.02 7.52 -2.38 -0.02 1.01 16 40 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.06 1.04 7.51 -2.39 -0.02 1.02 16 42 H 0.05 1.08 7.39 -2.39 -0.02 1.06 16 43 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 44 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 45 H 0.12 3.77 7.10 -2.91 -0.02 3.75 16 46 H 0.09 4.14 8.06 -2.91 -0.02 4.12 16 Total: -1.00 -62.10 364.25 6.82 -55.27 By element: Atomic # 1 Polarization: 18.53 SS G_CDS: 0.91 Total: 19.44 kcal Atomic # 6 Polarization: -42.72 SS G_CDS: 5.36 Total: -37.37 kcal Atomic # 7 Polarization: -83.17 SS G_CDS: -1.47 Total: -84.64 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -62.10 6.82 -55.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044373600.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.458 kcal (2) G-P(sol) polarization free energy of solvation -62.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds