Wall clock time and date at job start Mon Mar 30 2020 01:42:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86793 * 120.00121 * 2 1 4 4 H 1.48500 * 109.47105 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47491 * 300.00312 * 3 2 1 6 6 H 1.48503 * 109.47210 * 60.00367 * 3 2 1 7 7 C 1.37879 * 119.99527 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99576 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00101 * 359.97438 * 7 2 1 10 10 N 1.46507 * 109.46974 * 179.97438 * 9 7 2 11 11 N 1.40436 * 126.82177 * 89.98361 * 10 9 7 12 12 C 1.30688 * 106.82155 * 179.97438 * 11 10 9 13 13 N 1.48026 * 125.51471 * 179.97438 * 12 11 10 14 14 O 1.21793 * 119.99867 * 0.02562 * 13 12 11 15 15 O 1.21799 * 119.99956 * 179.97438 * 13 12 11 16 16 N 1.33261 * 108.96967 * 0.26174 * 12 11 10 17 17 C 1.30933 * 109.80895 * 359.55257 * 16 12 11 18 18 Br 1.89105 * 125.97982 * 180.19329 * 17 16 12 19 19 H 0.97003 * 119.99923 * 359.97438 * 1 2 3 20 20 H 1.09006 * 109.47041 * 60.00088 * 9 7 2 21 21 H 1.08995 * 109.47794 * 300.00342 * 9 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 7 2.2029 -3.6127 -0.0018 11 7 2.7509 -4.2528 1.1217 12 6 3.5481 -5.1865 0.6737 13 7 4.3420 -6.1139 1.5108 14 8 4.2816 -6.0416 2.7251 15 8 5.0549 -6.9500 0.9852 16 7 3.5353 -5.1644 -0.6587 17 6 2.7252 -4.2257 -1.0791 18 35 2.3593 -3.8008 -2.8851 19 1 -0.4850 0.8401 0.0004 20 1 0.6239 -2.5566 -0.8903 21 1 0.6245 -2.5571 0.8896 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049538530.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:21 Heat of formation + Delta-G solvation = 87.099131 kcal Electronic energy + Delta-G solvation = -13586.646250 eV Core-core repulsion = 10742.623310 eV Total energy + Delta-G solvation = -2844.022940 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 275.964 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -44.25238 -43.27019 -38.11299 -36.54960 -34.52938 -34.20863 -32.05713 -30.45653 -28.27943 -25.60571 -23.48962 -23.27525 -20.55986 -20.13133 -19.44719 -18.99268 -17.97066 -17.21301 -16.49140 -16.08356 -14.79489 -14.63965 -13.66781 -13.37519 -13.12507 -13.03146 -12.96175 -12.75540 -12.63745 -12.56072 -12.24101 -12.05711 -11.98668 -11.35092 -11.10930 -10.81819 -8.46980 -6.63725 -1.38804 -0.88052 -0.81455 -0.17584 0.89141 1.11450 1.37071 1.41776 1.51996 2.28552 2.57612 2.90116 3.45515 3.92489 4.48401 4.68615 4.77246 4.96842 5.40652 5.54460 5.66075 6.33009 6.41377 7.08641 8.62071 Molecular weight = 275.96amu Principal moments of inertia in cm(-1) A = 0.018283 B = 0.008109 C = 0.006106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.151053 B = 3452.014856 C = 4584.863594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.039 3.961 3 Si 0.967 3.033 4 H -0.274 1.274 5 H -0.266 1.266 6 H -0.275 1.275 7 C -0.563 4.563 8 H 0.057 0.943 9 C 0.250 3.750 10 N -0.283 5.283 11 N -0.227 5.227 12 C 0.246 3.754 13 N 0.070 4.930 14 O -0.120 6.120 15 O -0.086 6.086 16 N -0.481 5.481 17 C 0.273 3.727 18 Br 0.153 6.847 19 H 0.278 0.722 20 H 0.087 0.913 21 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.399 -5.391 -6.621 8.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.165 4.165 3 Si 0.791 3.209 4 H -0.198 1.198 5 H -0.190 1.190 6 H -0.201 1.201 7 C -0.601 4.601 8 H 0.075 0.925 9 C 0.133 3.867 10 N -0.078 5.078 11 N -0.070 5.070 12 C -0.114 4.114 13 N 0.602 4.398 14 O -0.336 6.336 15 O -0.312 6.312 16 N -0.216 5.216 17 C -0.080 4.080 18 Br 0.232 6.768 19 H 0.088 0.912 20 H 0.105 0.895 21 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.715 -4.692 -7.080 8.665 hybrid contribution 0.389 0.639 0.580 0.947 sum 2.104 -4.053 -6.500 7.943 Atomic orbital electron populations 1.69950 1.07038 1.29398 1.47778 1.25545 0.95741 1.02158 0.93031 0.85355 0.78507 0.78467 0.78558 1.19825 1.19029 1.20087 1.21208 0.93330 0.89727 1.55835 0.92510 1.20287 0.85625 0.79069 1.01701 1.51596 1.31048 1.24754 1.00382 1.78195 1.11620 1.07406 1.09794 1.24072 1.01122 0.97160 0.89014 1.41527 0.98984 0.99053 1.00218 1.94632 1.69759 1.75984 0.93211 1.94585 1.33206 1.26634 1.76782 1.70010 1.21805 1.22245 1.07499 1.26453 0.95062 0.92413 0.94061 1.96975 1.93050 1.92252 0.94560 0.91212 0.89518 0.92386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -45.04 13.29 21.45 0.28 -44.75 14 2 C 0.04 1.87 5.46 84.65 0.46 2.33 14 3 Si 0.97 38.71 29.54 68.60 2.03 40.74 14 4 H -0.27 -11.06 7.11 99.48 0.71 -10.36 14 5 H -0.27 -10.12 7.11 99.48 0.71 -9.41 14 6 H -0.28 -10.91 7.11 99.48 0.71 -10.20 14 7 C -0.56 -27.23 9.39 25.60 0.24 -26.99 14 8 H 0.06 2.85 7.81 -2.91 -0.02 2.83 14 9 C 0.25 11.03 6.06 85.63 0.52 11.55 14 10 N -0.28 -11.77 3.62 -350.03 -1.27 -13.03 14 11 N -0.23 -9.71 12.65 -53.46 -0.68 -10.39 14 12 C 0.25 9.85 9.01 256.53 2.31 12.16 14 13 N 0.07 2.56 4.45 -53.27 -0.24 2.33 14 14 O -0.12 -4.34 19.22 18.89 0.36 -3.98 14 15 O -0.09 -2.96 19.23 18.89 0.36 -2.59 14 16 N -0.48 -18.56 11.16 -189.30 -2.11 -20.67 14 17 C 0.27 10.18 8.46 180.31 1.53 11.71 14 18 Br 0.15 4.38 33.45 -20.37 -0.68 3.70 14 19 H 0.28 12.99 8.31 -92.71 -0.77 12.22 14 20 H 0.09 3.66 7.71 -2.38 -0.02 3.64 14 21 H 0.06 2.73 8.14 -2.39 -0.02 2.71 14 Total: -1.00 -50.87 238.28 4.41 -46.46 By element: Atomic # 1 Polarization: -9.86 SS G_CDS: 1.29 Total: -8.57 kcal Atomic # 6 Polarization: 5.70 SS G_CDS: 5.06 Total: 10.76 kcal Atomic # 7 Polarization: -82.51 SS G_CDS: -4.01 Total: -86.52 kcal Atomic # 8 Polarization: -7.30 SS G_CDS: 0.73 Total: -6.57 kcal Atomic # 14 Polarization: 38.71 SS G_CDS: 2.03 Total: 40.74 kcal Atomic # 35 Polarization: 4.38 SS G_CDS: -0.68 Total: 3.70 kcal Total: -50.87 4.41 -46.46 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049538530.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.561 kcal (2) G-P(sol) polarization free energy of solvation -50.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds