Wall clock time and date at job start Mon Mar 30 2020 02:05:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 O 1.45202 * 109.46894 * 51.17938 * 3 2 1 5 5 C 1.34697 * 116.99571 * 179.97438 * 4 3 2 6 6 O 1.21454 * 120.00338 * 0.02562 * 5 4 3 7 7 C 1.47859 * 119.99862 * 179.97438 * 5 4 3 8 8 C 1.39963 * 120.45925 * 180.02562 * 7 5 4 9 9 C 1.38385 * 118.36123 * 179.97438 * 8 7 5 10 10 C 1.39426 * 119.18927 * 0.02562 * 9 8 7 11 11 C 1.48106 * 119.57694 * 180.02562 * 10 9 8 12 12 O 1.21467 * 120.00077 * 359.97438 * 11 10 9 13 13 O 1.34655 * 120.00667 * 179.97438 * 11 10 9 14 14 C 1.34758 * 117.00670 * 179.97438 * 13 11 10 15 15 H 1.08000 * 119.99539 * 0.02562 * 14 13 11 16 16 C 1.38939 * 120.00025 * 179.97438 * 14 13 11 17 17 N 1.31333 * 119.99471 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 120.00254 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.47422 * 89.99377 * 18 16 14 20 20 H 1.48491 * 109.47130 * 209.99770 * 18 16 14 21 21 H 1.48509 * 109.46877 * 329.99450 * 18 16 14 22 22 N 1.32812 * 120.85050 * 359.97438 * 10 9 8 23 23 C 1.31379 * 121.79512 * 0.02562 * 22 10 9 24 24 H 1.08997 * 109.47124 * 291.18101 * 3 2 1 25 25 H 1.08995 * 109.46799 * 171.18202 * 3 2 1 26 26 H 1.08004 * 120.82115 * 359.96019 * 8 7 5 27 27 H 1.08002 * 120.40671 * 179.72862 * 9 8 7 28 28 H 0.97006 * 119.99439 * 180.02562 * 17 16 14 29 29 H 1.08007 * 119.63787 * 180.02562 * 23 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 8 3.0924 -0.8573 -1.0666 5 6 4.4278 -0.9669 -1.2044 6 8 5.1674 -0.3628 -0.4540 7 6 4.9933 -1.8236 -2.2686 8 6 6.3795 -1.9449 -2.4201 9 6 6.8616 -2.7588 -3.4302 10 6 5.9576 -3.4248 -4.2567 11 6 6.4642 -4.2984 -5.3400 12 8 7.6604 -4.4307 -5.5043 13 8 5.5988 -4.9462 -6.1430 14 6 6.1254 -5.7244 -7.1089 15 1 7.1973 -5.8069 -7.2113 16 6 5.2893 -6.4215 -7.9722 17 7 5.8026 -7.1804 -8.9133 18 14 3.4352 -6.2795 -7.7946 19 1 2.9431 -5.1521 -8.6265 20 1 2.7966 -7.5423 -8.2446 21 1 3.0919 -6.0310 -6.3712 22 7 4.6479 -3.2867 -4.0844 23 6 4.1510 -2.5237 -3.1373 24 1 2.9715 -0.3705 0.9582 25 1 2.9709 1.0163 -0.1575 26 1 7.0561 -1.4162 -1.7651 27 1 7.9251 -2.8728 -3.5795 28 1 5.2188 -7.6668 -9.5163 29 1 3.0800 -2.4369 -3.0282 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051479208.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:59 Heat of formation + Delta-G solvation = -104.081043 kcal Electronic energy + Delta-G solvation = -19381.546125 eV Core-core repulsion = 15849.633870 eV Total energy + Delta-G solvation = -3531.912256 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 276.062 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.14575 -41.41988 -40.42190 -38.19302 -37.53919 -37.22567 -34.63565 -33.93741 -33.04335 -30.19796 -28.31359 -26.41632 -24.77715 -23.26418 -21.99564 -20.24825 -19.78085 -19.56936 -18.96065 -17.97184 -17.77329 -17.27830 -17.01408 -16.94670 -16.08487 -15.74585 -15.54282 -15.06138 -14.81807 -14.63764 -14.37435 -14.26080 -14.14202 -13.69155 -13.55661 -13.32565 -13.27274 -12.47118 -12.35809 -11.99972 -11.90961 -11.82234 -11.54074 -11.23055 -10.89657 -10.70352 -10.52003 -8.63568 -6.45657 -1.09200 0.07072 0.72703 0.94508 1.32858 1.36697 1.55512 1.62248 1.69010 1.99087 2.09366 2.26881 2.61477 2.77018 2.90928 3.13325 3.48775 3.64660 3.78253 3.81842 4.08456 4.24181 4.25325 4.62289 4.72003 4.83800 5.03608 5.26534 5.38640 5.78899 6.29775 6.33380 6.45856 6.60668 6.72258 7.47581 8.47681 Molecular weight = 276.06amu Principal moments of inertia in cm(-1) A = 0.022516 B = 0.003958 C = 0.003372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.234310 B = 7073.081109 C = 8301.171600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C 0.237 3.763 3 C 0.168 3.832 4 O -0.350 6.350 5 C 0.546 3.454 6 O -0.498 6.498 7 C -0.160 4.160 8 C 0.008 3.992 9 C -0.119 4.119 10 C 0.134 3.866 11 C 0.444 3.556 12 O -0.556 6.556 13 O -0.227 6.227 14 C -0.407 4.407 15 H 0.067 0.933 16 C 0.026 3.974 17 N -0.898 5.898 18 Si 0.976 3.024 19 H -0.260 1.260 20 H -0.261 1.261 21 H -0.253 1.253 22 N -0.483 5.483 23 C 0.160 3.840 24 H 0.152 0.848 25 H 0.152 0.848 26 H 0.194 0.806 27 H 0.166 0.834 28 H 0.294 0.706 29 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.531 15.695 19.502 25.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.133 5.133 2 C -0.081 4.081 3 C 0.093 3.907 4 O -0.265 6.265 5 C 0.389 3.611 6 O -0.386 6.386 7 C -0.164 4.164 8 C -0.017 4.017 9 C -0.140 4.140 10 C 0.000 4.000 11 C 0.291 3.709 12 O -0.452 6.452 13 O -0.133 6.133 14 C -0.483 4.483 15 H 0.085 0.915 16 C -0.177 4.177 17 N -0.537 5.537 18 Si 0.796 3.204 19 H -0.184 1.184 20 H -0.185 1.185 21 H -0.176 1.176 22 N -0.195 5.195 23 C -0.001 4.001 24 H 0.169 0.831 25 H 0.169 0.831 26 H 0.211 0.789 27 H 0.184 0.816 28 H 0.104 0.896 29 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -7.258 15.209 18.908 25.328 hybrid contribution 0.752 -0.038 -0.079 0.757 sum -6.507 15.172 18.829 25.041 Atomic orbital electron populations 1.81338 1.14388 1.09171 1.08365 1.28712 0.94501 0.92295 0.92623 1.20450 0.79567 0.98447 0.92274 1.86500 1.23726 1.63760 1.52516 1.20260 0.79967 0.78717 0.82145 1.90899 1.60279 1.44149 1.43306 1.20361 0.95089 1.02301 0.98616 1.21981 0.93956 0.91978 0.93785 1.22165 1.02286 0.95542 0.93965 1.20329 0.90633 0.95397 0.93673 1.21156 0.84485 0.81843 0.83371 1.90671 1.17517 1.64858 1.72151 1.83611 1.39122 1.51761 1.38847 1.20517 0.94231 1.24796 1.08758 0.91467 1.25528 1.05808 0.93287 0.93097 1.69629 1.39394 1.27348 1.17291 0.85164 0.75872 0.78870 0.80498 1.18435 1.18512 1.17626 1.67777 1.13647 1.17440 1.20590 1.23694 1.02242 0.87546 0.86617 0.83087 0.83083 0.78939 0.81602 0.89621 0.78184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -8.77 18.54 20.01 0.37 -8.40 15 2 C 0.24 2.70 15.83 89.44 1.42 4.12 15 3 C 0.17 0.68 5.95 70.18 0.42 1.10 15 4 O -0.35 -3.51 9.45 -56.07 -0.53 -4.04 15 5 C 0.55 7.09 7.91 70.37 0.56 7.65 15 6 O -0.50 -7.30 16.20 19.98 0.32 -6.98 15 7 C -0.16 -2.78 5.90 -19.94 -0.12 -2.89 15 8 C 0.01 0.14 9.71 22.72 0.22 0.36 15 9 C -0.12 -3.08 9.62 22.59 0.22 -2.87 15 10 C 0.13 4.83 6.75 41.90 0.28 5.11 15 11 C 0.44 21.77 7.89 70.44 0.56 22.32 15 12 O -0.56 -29.71 15.55 19.94 0.31 -29.40 15 13 O -0.23 -12.52 8.38 13.09 0.11 -12.41 15 14 C -0.41 -25.07 10.11 67.99 0.69 -24.38 15 15 H 0.07 4.61 7.09 -2.91 -0.02 4.59 15 16 C 0.03 1.47 5.50 84.94 0.47 1.94 15 17 N -0.90 -53.27 13.95 21.65 0.30 -52.97 15 18 Si 0.98 44.28 28.62 68.60 1.96 46.24 15 19 H -0.26 -11.24 7.11 99.48 0.71 -10.53 15 20 H -0.26 -10.85 7.11 99.48 0.71 -10.15 15 21 H -0.25 -11.42 7.11 99.48 0.71 -10.72 15 22 N -0.48 -16.05 10.10 -183.93 -1.86 -17.90 15 23 C 0.16 3.53 10.78 85.14 0.92 4.44 15 24 H 0.15 -0.13 8.14 -2.39 -0.02 -0.15 15 25 H 0.15 -0.13 8.14 -2.39 -0.02 -0.15 15 26 H 0.19 2.08 7.73 -2.91 -0.02 2.06 15 27 H 0.17 4.08 7.63 -2.91 -0.02 4.06 15 28 H 0.29 15.61 8.31 -92.70 -0.77 14.84 15 29 H 0.20 3.20 7.62 -2.91 -0.02 3.17 15 Total: -1.00 -79.77 292.68 7.84 -71.93 By element: Atomic # 1 Polarization: -4.20 SS G_CDS: 1.22 Total: -2.98 kcal Atomic # 6 Polarization: 11.28 SS G_CDS: 5.62 Total: 16.90 kcal Atomic # 7 Polarization: -78.08 SS G_CDS: -1.18 Total: -79.27 kcal Atomic # 8 Polarization: -53.05 SS G_CDS: 0.21 Total: -52.84 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 1.96 Total: 46.24 kcal Total: -79.77 7.84 -71.93 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051479208.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.147 kcal (2) G-P(sol) polarization free energy of solvation -79.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds