Wall clock time and date at job start Mon Mar 30 2020 02:01:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29375 * 1 3 3 Si 1.86797 * 120.00636 * 2 1 4 4 H 1.48500 * 109.47266 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46885 * 300.00311 * 3 2 1 6 6 H 1.48505 * 109.47016 * 60.00060 * 3 2 1 7 7 C 1.46587 * 119.99662 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99994 * 179.97438 * 7 2 1 9 9 O 1.22508 * 119.99808 * 0.02562 * 7 2 1 10 10 C 1.35133 * 116.99853 * 179.97438 * 9 7 2 11 11 O 1.21570 * 120.00172 * 359.97438 * 10 9 7 12 12 C 1.46602 * 120.00015 * 179.97438 * 10 9 7 13 13 C 1.36627 * 126.79447 * 359.96846 * 12 10 9 14 14 N 1.35319 * 109.74732 * 180.02562 * 13 12 10 15 15 H 0.97002 * 124.75773 * 179.97438 * 14 13 12 16 16 C 1.37997 * 110.47828 * 359.97438 * 14 13 12 17 17 C 1.39112 * 133.16770 * 180.02562 * 16 14 13 18 18 C 1.37787 * 119.93645 * 179.73764 * 17 16 14 19 19 N 1.48015 * 119.68901 * 180.25564 * 18 17 16 20 20 O 1.31693 * 120.00153 * 180.25982 * 19 18 17 21 21 O 1.31701 * 119.99498 * 0.25492 * 19 18 17 22 22 C 1.38737 * 120.62914 * 0.51782 * 18 17 16 23 23 C 1.37783 * 120.28964 * 359.45752 * 22 18 17 24 24 C 1.39242 * 119.67387 * 0.27978 * 23 22 18 25 25 H 0.97005 * 119.99807 * 359.97438 * 1 2 3 26 26 H 1.07994 * 125.12029 * 0.05878 * 13 12 10 27 27 H 1.08001 * 120.03303 * 359.97438 * 17 16 14 28 28 H 1.08002 * 119.85697 * 179.74096 * 22 18 17 29 29 H 1.08002 * 120.16382 * 180.25700 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2937 0.0000 0.0000 3 14 2.2279 1.6176 0.0000 4 1 3.6879 1.3461 -0.0006 5 1 1.8692 2.3963 -1.2125 6 1 1.8692 2.3963 1.2126 7 6 2.0266 -1.2695 0.0006 8 1 3.1066 -1.2696 0.0001 9 8 1.4140 -2.3304 0.0006 10 6 2.1499 -3.4638 0.0006 11 8 3.3639 -3.4003 0.0001 12 6 1.4842 -4.7700 0.0011 13 6 0.1379 -5.0023 0.0023 14 7 -0.0961 -6.3351 0.0031 15 1 -0.9766 -6.7420 0.0043 16 6 1.0937 -7.0342 0.0018 17 6 1.4003 -8.3911 0.0015 18 6 2.7165 -8.7986 -0.0053 19 7 3.0365 -10.2437 -0.0114 20 8 4.2924 -10.6401 -0.0127 21 8 2.0652 -11.1332 -0.0153 22 6 3.7449 -7.8673 -0.0010 23 6 3.4613 -6.5190 -0.0012 24 6 2.1356 -6.0934 0.0003 25 1 -0.4850 0.8401 0.0004 26 1 -0.6246 -4.2375 0.0021 27 1 0.6075 -9.1244 0.0027 28 1 4.7722 -8.2006 -0.0022 29 1 4.2634 -5.7957 -0.0021 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000053022079.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:02 Heat of formation + Delta-G solvation = 13.960952 kcal Electronic energy + Delta-G solvation = -19836.844910 eV Core-core repulsion = 16310.051339 eV Total energy + Delta-G solvation = -3526.793571 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 276.062 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.90946 -41.77940 -40.36297 -38.04803 -37.54232 -35.60893 -34.53708 -33.54627 -31.42809 -31.07778 -27.91291 -26.99465 -24.43300 -24.34519 -22.87715 -21.41744 -20.23542 -20.07310 -19.37265 -18.47532 -18.00913 -17.51742 -17.17464 -16.87494 -16.45779 -16.14003 -15.85717 -15.73221 -15.24518 -15.00528 -14.40695 -13.83893 -13.38349 -13.37331 -13.18703 -12.78224 -12.55525 -12.52783 -12.30301 -12.16086 -11.91565 -11.74779 -11.24960 -10.98212 -10.79727 -9.92054 -9.25963 -8.72266 -5.88763 -1.88099 -0.36528 -0.04609 0.06222 0.69928 1.37087 1.38303 1.50841 1.71484 2.02798 2.15086 2.38240 2.74851 3.04951 3.24108 3.46445 3.49428 3.68062 3.76698 3.95792 4.16272 4.41438 4.53948 4.72094 4.83012 4.90639 5.05576 5.13940 5.34643 5.48422 5.58445 5.81429 6.28657 6.70195 6.94589 8.12366 8.52292 Molecular weight = 276.06amu Principal moments of inertia in cm(-1) A = 0.044327 B = 0.003719 C = 0.003436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.523624 B = 7526.294608 C = 8147.963561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.009 3.991 3 Si 1.009 2.991 4 H -0.270 1.270 5 H -0.256 1.256 6 H -0.256 1.256 7 C -0.440 4.440 8 H 0.064 0.936 9 O -0.169 6.169 10 C 0.400 3.600 11 O -0.604 6.604 12 C -0.224 4.224 13 C 0.178 3.822 14 N -0.540 5.540 15 H 0.451 0.549 16 C 0.083 3.917 17 C -0.014 4.014 18 C -0.008 4.008 19 N -0.004 5.004 20 O -0.209 6.209 21 O -0.181 6.181 22 C -0.077 4.077 23 C -0.071 4.071 24 C -0.032 4.032 25 H 0.294 0.706 26 H 0.220 0.780 27 H 0.188 0.812 28 H 0.165 0.835 29 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.188 -10.694 0.023 11.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C -0.201 4.201 3 Si 0.829 3.171 4 H -0.195 1.195 5 H -0.180 1.180 6 H -0.180 1.180 7 C -0.518 4.518 8 H 0.082 0.918 9 O -0.072 6.072 10 C 0.255 3.745 11 O -0.508 6.508 12 C -0.232 4.232 13 C 0.043 3.957 14 N -0.144 5.144 15 H 0.295 0.705 16 C -0.024 4.024 17 C -0.036 4.036 18 C -0.096 4.096 19 N 0.469 4.531 20 O -0.395 6.395 21 O -0.375 6.375 22 C -0.098 4.098 23 C -0.091 4.091 24 C -0.038 4.038 25 H 0.106 0.894 26 H 0.237 0.763 27 H 0.205 0.795 28 H 0.183 0.817 29 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -5.357 -10.016 0.025 11.359 hybrid contribution 0.528 0.315 -0.001 0.615 sum -4.829 -9.701 0.023 10.837 Atomic orbital electron populations 1.68908 1.08812 1.31168 1.39247 1.27833 0.96171 1.01194 0.94940 0.84674 0.78132 0.74691 0.79642 1.19468 1.18000 1.17985 1.20611 0.92834 0.83382 1.54978 0.91812 1.80514 1.41123 1.13691 1.71828 1.20344 0.85548 0.84732 0.83853 1.90536 1.16315 1.87325 1.56624 1.19146 0.93660 0.88858 1.21527 1.22790 0.96355 0.85360 0.91243 1.41389 1.07921 1.04274 1.60794 0.70454 1.17530 0.86295 0.91298 1.07261 1.19852 0.95166 0.93446 0.95105 1.19820 0.95780 0.76391 1.17636 1.50503 1.02508 1.04882 0.95167 1.96281 0.98309 1.87126 1.57769 1.96229 1.36998 1.48721 1.55564 1.20803 1.00150 0.90564 0.98274 1.20587 0.95744 0.94483 0.98256 1.19343 0.94031 0.91560 0.98844 0.89374 0.76333 0.79511 0.81706 0.84110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -43.70 13.66 23.21 0.32 -43.38 15 2 C 0.01 0.44 5.69 87.23 0.50 0.94 15 3 Si 1.01 39.79 29.64 68.60 2.03 41.82 15 4 H -0.27 -11.03 7.11 99.48 0.71 -10.32 15 5 H -0.26 -9.29 7.11 99.48 0.71 -8.58 15 6 H -0.26 -9.28 7.11 99.48 0.71 -8.58 15 7 C -0.44 -25.30 9.62 70.00 0.67 -24.62 15 8 H 0.06 3.92 6.70 -2.91 -0.02 3.90 15 9 O -0.17 -9.23 9.12 81.40 0.74 -8.49 15 10 C 0.40 20.06 7.80 70.00 0.55 20.60 15 11 O -0.60 -33.91 15.28 19.59 0.30 -33.61 15 12 C -0.22 -8.23 6.27 -19.03 -0.12 -8.35 15 13 C 0.18 4.44 11.63 83.78 0.97 5.41 15 14 N -0.54 -9.00 5.98 -187.00 -1.12 -10.11 15 15 H 0.45 3.01 8.96 -92.71 -0.83 2.18 15 16 C 0.08 1.85 7.25 38.90 0.28 2.13 15 17 C -0.01 -0.29 9.59 22.37 0.21 -0.07 15 18 C -0.01 -0.20 6.88 36.39 0.25 0.05 15 19 N 0.00 -0.11 4.98 -46.43 -0.23 -0.34 15 20 O -0.21 -6.51 19.12 3.53 0.07 -6.44 15 21 O -0.18 -5.05 19.12 3.51 0.07 -4.98 15 22 C -0.08 -2.00 9.56 22.28 0.21 -1.79 15 23 C -0.07 -2.19 9.85 22.40 0.22 -1.97 15 24 C -0.03 -1.01 6.26 -20.08 -0.13 -1.14 15 25 H 0.29 13.40 8.26 -92.70 -0.77 12.63 15 26 H 0.22 4.63 8.06 -2.91 -0.02 4.60 15 27 H 0.19 2.47 7.55 -2.91 -0.02 2.45 15 28 H 0.17 3.80 7.55 -2.91 -0.02 3.78 15 29 H 0.14 4.80 7.45 -2.91 -0.02 4.77 15 Total: -1.00 -73.71 283.14 6.22 -67.49 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: 0.42 Total: 6.84 kcal Atomic # 6 Polarization: -12.43 SS G_CDS: 3.63 Total: -8.80 kcal Atomic # 7 Polarization: -52.81 SS G_CDS: -1.03 Total: -53.84 kcal Atomic # 8 Polarization: -54.69 SS G_CDS: 1.18 Total: -53.52 kcal Atomic # 14 Polarization: 39.79 SS G_CDS: 2.03 Total: 41.82 kcal Total: -73.71 6.22 -67.49 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053022079.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.450 kcal (2) G-P(sol) polarization free energy of solvation -73.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds