Wall clock time and date at job start Mon Mar 30 2020 01:24:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52992 * 109.47175 * 2 1 4 4 H 1.09001 * 109.47506 * 179.50877 * 3 2 1 5 5 C 1.50697 * 109.47251 * 299.51114 * 3 2 1 6 6 H 1.08000 * 120.00332 * 119.99657 * 5 3 2 7 7 C 1.37879 * 119.99891 * 300.00129 * 5 3 2 8 8 N 1.31509 * 119.99965 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 119.99894 * 179.97438 * 7 5 3 10 10 H 1.48509 * 109.46739 * 90.00464 * 9 7 5 11 11 H 1.48501 * 109.47036 * 209.99745 * 9 7 5 12 12 H 1.48496 * 109.47323 * 330.00126 * 9 7 5 13 13 N 1.46901 * 109.47209 * 59.50827 * 3 2 1 14 14 C 1.46906 * 110.99618 * 85.86102 * 13 3 2 15 15 H 1.08994 * 109.47295 * 327.25068 * 14 13 3 16 16 C 1.52991 * 109.47272 * 87.25785 * 14 13 3 17 17 C 1.50707 * 109.46765 * 207.25839 * 14 13 3 18 18 C 1.38236 * 119.99617 * 320.20178 * 17 14 13 19 19 C 1.38238 * 119.99488 * 180.26143 * 18 17 14 20 20 C 1.38232 * 120.00408 * 359.51278 * 19 18 17 21 21 C 1.50695 * 120.00182 * 180.25382 * 20 19 18 22 22 C 1.53003 * 109.47057 * 120.00303 * 21 20 19 23 23 C 1.53001 * 109.47388 * 240.00139 * 21 20 19 24 24 C 1.38232 * 119.99516 * 0.27979 * 20 19 18 25 25 C 1.38233 * 120.00520 * 359.95195 * 24 20 19 26 26 H 1.09008 * 109.46978 * 176.24280 * 1 2 3 27 27 H 1.08998 * 109.46993 * 296.23904 * 1 2 3 28 28 H 1.08996 * 109.46765 * 56.24245 * 1 2 3 29 29 H 1.09001 * 109.47230 * 239.99661 * 2 1 3 30 30 H 1.09001 * 109.46954 * 119.99988 * 2 1 3 31 31 H 0.97004 * 119.99721 * 179.97438 * 8 7 5 32 32 H 1.00895 * 111.00373 * 209.80873 * 13 3 2 33 33 H 1.09002 * 109.47209 * 179.97438 * 16 14 13 34 34 H 1.09002 * 109.47010 * 299.99657 * 16 14 13 35 35 H 1.09004 * 109.47394 * 59.99501 * 16 14 13 36 36 H 1.07999 * 120.00744 * 0.05270 * 18 17 14 37 37 H 1.08004 * 120.00065 * 179.78995 * 19 18 17 38 38 H 1.08998 * 109.47611 * 0.02562 * 21 20 19 39 39 H 1.09000 * 109.47250 * 60.00116 * 22 21 20 40 40 H 1.09002 * 109.47477 * 180.02562 * 22 21 20 41 41 H 1.09000 * 109.47159 * 300.00466 * 22 21 20 42 42 H 1.08998 * 109.46807 * 59.99990 * 23 21 20 43 43 H 1.08996 * 109.47253 * 180.02562 * 23 21 20 44 44 H 1.09010 * 109.47047 * 300.00117 * 23 21 20 45 45 H 1.08004 * 120.00064 * 179.97438 * 24 20 19 46 46 H 1.07995 * 120.00649 * 179.97438 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1300 1.4425 0.0088 5 6 1.5476 2.1493 -1.2364 6 1 0.9259 3.0277 -1.1449 7 6 1.8908 1.6747 -2.4847 8 7 2.6473 0.6048 -2.5962 9 14 1.2798 2.5506 -4.0174 10 1 2.2610 3.5914 -4.4169 11 1 1.1240 1.5681 -5.1200 12 1 -0.0308 3.1885 -3.7337 13 7 1.5407 2.1384 1.1935 14 6 2.4262 1.9124 2.3436 15 1 2.8646 0.9169 2.2746 16 6 3.5400 2.9613 2.3436 17 6 1.6312 2.0238 3.6191 18 6 0.6599 2.9993 3.7451 19 6 -0.0656 3.1049 4.9171 20 6 0.1732 2.2287 5.9592 21 6 -0.6216 2.3403 7.2346 22 6 -1.3814 1.0347 7.4779 23 6 0.3273 2.6039 8.4055 24 6 1.1416 1.2505 5.8315 25 6 1.8704 1.1479 4.6614 26 1 -0.3633 -1.0255 -0.0673 27 1 -0.3633 0.4543 0.9218 28 1 -0.3633 0.5710 -0.8544 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.8884 0.2707 -3.4744 32 1 1.4246 3.1246 1.0149 33 1 4.1968 2.7939 3.1973 34 1 4.1150 2.8807 1.4211 35 1 3.1016 3.9569 2.4126 36 1 0.4701 3.6811 2.9293 37 1 -0.8221 3.8692 5.0168 38 1 -1.3316 3.1629 7.1496 39 1 -0.6717 0.2117 7.5628 40 1 -1.9567 1.1154 8.4001 41 1 -2.0573 0.8468 6.6437 42 1 0.8685 3.5339 8.2322 43 1 -0.2476 2.6841 9.3281 44 1 1.0370 1.7808 8.4905 45 1 1.3285 0.5661 6.6459 46 1 2.6272 0.3839 4.5618 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054182120.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:12 Heat of formation + Delta-G solvation = -3.773223 kcal Electronic energy + Delta-G solvation = -21577.089368 eV Core-core repulsion = 18658.285075 eV Total energy + Delta-G solvation = -2918.804293 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.52756 -37.05156 -35.20951 -33.23598 -31.19758 -30.67144 -29.24733 -27.93952 -27.24052 -25.79438 -23.74121 -23.24814 -22.18643 -21.01165 -19.66703 -18.72937 -16.76868 -16.00563 -15.37573 -14.83476 -14.73647 -14.09908 -13.97383 -13.72636 -13.59580 -13.32271 -13.05812 -12.96089 -12.74335 -12.41428 -12.26094 -12.06292 -11.80652 -11.71491 -11.37413 -11.28868 -11.11911 -10.93588 -10.77964 -10.72980 -10.47544 -10.37589 -10.24073 -10.02347 -9.67465 -9.35206 -8.76833 -8.58543 -8.46455 -8.15277 -7.19957 -6.01193 -4.06462 1.68047 1.74593 3.29088 3.36489 3.39851 4.06933 4.40785 4.68774 4.78475 5.10422 5.12869 5.24625 5.29956 5.31696 5.42200 5.48216 5.50090 5.64771 5.71097 5.73922 5.77695 5.82839 5.89795 5.92297 6.13262 6.14809 6.19917 6.29440 6.37318 6.43817 6.53364 6.60782 6.71803 6.79197 6.87685 6.90739 7.08148 7.28659 7.33673 7.37583 7.52659 7.76976 7.80982 7.87129 8.28897 8.41825 8.68751 9.03270 9.58317 11.04642 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.030638 B = 0.003761 C = 0.003709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.668506 B = 7442.423298 C = 7547.112735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.102 4.102 3 C 0.217 3.783 4 H 0.001 0.999 5 C -0.511 4.511 6 H 0.058 0.942 7 C 0.063 3.937 8 N -0.889 5.889 9 Si 0.892 3.108 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.274 1.274 13 N -0.676 5.676 14 C 0.118 3.882 15 H 0.078 0.922 16 C -0.171 4.171 17 C -0.052 4.052 18 C -0.093 4.093 19 C -0.122 4.122 20 C -0.093 4.093 21 C -0.054 4.054 22 C -0.143 4.143 23 C -0.142 4.142 24 C -0.118 4.118 25 C -0.119 4.119 26 H 0.012 0.988 27 H 0.042 0.958 28 H 0.055 0.945 29 H 0.086 0.914 30 H 0.008 0.992 31 H 0.260 0.740 32 H 0.330 0.670 33 H 0.049 0.951 34 H 0.062 0.938 35 H 0.052 0.948 36 H 0.121 0.879 37 H 0.114 0.886 38 H 0.073 0.927 39 H 0.056 0.944 40 H 0.053 0.947 41 H 0.056 0.944 42 H 0.054 0.946 43 H 0.053 0.947 44 H 0.055 0.945 45 H 0.113 0.887 46 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.093 2.729 17.751 18.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.141 4.141 3 C 0.110 3.890 4 H 0.019 0.981 5 C -0.550 4.550 6 H 0.076 0.924 7 C -0.138 4.138 8 N -0.527 5.527 9 Si 0.720 3.280 10 H -0.209 1.209 11 H -0.213 1.213 12 H -0.199 1.199 13 N -0.306 5.306 14 C 0.007 3.993 15 H 0.096 0.904 16 C -0.230 4.230 17 C -0.053 4.053 18 C -0.111 4.111 19 C -0.140 4.140 20 C -0.093 4.093 21 C -0.072 4.072 22 C -0.201 4.201 23 C -0.200 4.200 24 C -0.136 4.136 25 C -0.138 4.138 26 H 0.031 0.969 27 H 0.061 0.939 28 H 0.074 0.926 29 H 0.104 0.896 30 H 0.027 0.973 31 H 0.070 0.930 32 H 0.148 0.852 33 H 0.068 0.932 34 H 0.081 0.919 35 H 0.071 0.929 36 H 0.139 0.861 37 H 0.132 0.868 38 H 0.091 0.909 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.075 0.925 42 H 0.073 0.927 43 H 0.072 0.928 44 H 0.074 0.926 45 H 0.131 0.869 46 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -3.448 2.092 17.755 18.207 hybrid contribution 0.481 0.894 -1.209 1.578 sum -2.967 2.986 16.546 17.073 Atomic orbital electron populations 1.21436 0.97554 0.97279 1.01335 1.21438 0.95022 0.98318 0.99304 1.19124 0.92920 0.91363 0.85590 0.98088 1.21182 1.31542 1.11910 0.90364 0.92370 1.24877 0.95080 0.94985 0.98890 1.69883 1.36648 1.22611 1.23604 0.86597 0.79220 0.79324 0.82859 1.20859 1.21280 1.19875 1.60794 1.48401 1.15760 1.05644 1.20460 0.90645 0.98768 0.89459 0.90421 1.22443 0.99381 0.99401 1.01749 1.20020 0.96035 0.94356 0.94847 1.20926 0.95216 0.98358 0.96642 1.20988 1.00156 0.99289 0.93539 1.19693 0.97586 0.96597 0.95412 1.20068 0.96275 0.98487 0.92419 1.21852 1.00078 0.96872 1.01263 1.21848 0.99219 1.01859 0.97049 1.20788 0.96736 0.98510 0.97538 1.20981 1.00120 0.99232 0.93435 0.96934 0.93884 0.92628 0.89587 0.97306 0.92994 0.85204 0.93207 0.91942 0.92855 0.86063 0.86843 0.90863 0.92531 0.92791 0.92473 0.92651 0.92779 0.92550 0.86907 0.86660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.71 9.52 37.16 0.35 -2.36 16 2 C -0.10 -2.49 5.57 -26.73 -0.15 -2.64 16 3 C 0.22 5.28 2.11 -68.87 -0.14 5.14 16 4 H 0.00 0.04 7.28 -51.93 -0.38 -0.34 16 5 C -0.51 -13.49 7.29 -34.44 -0.25 -13.75 16 6 H 0.06 1.53 7.60 -52.49 -0.40 1.13 16 7 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 8 N -0.89 -24.96 11.31 55.43 0.63 -24.33 16 9 Si 0.89 21.04 29.54 -169.99 -5.02 16.01 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 13 N -0.68 -13.78 4.75 -102.17 -0.49 -14.26 16 14 C 0.12 2.08 2.59 -68.86 -0.18 1.90 16 15 H 0.08 1.48 7.04 -51.93 -0.37 1.11 16 16 C -0.17 -2.75 9.13 37.15 0.34 -2.41 16 17 C -0.05 -0.83 4.96 -104.62 -0.52 -1.35 16 18 C -0.09 -1.42 9.33 -39.58 -0.37 -1.79 16 19 C -0.12 -1.65 9.67 -39.58 -0.38 -2.03 16 20 C -0.09 -1.17 4.78 -104.63 -0.50 -1.67 16 21 C -0.05 -0.54 3.09 -91.77 -0.28 -0.82 16 22 C -0.14 -1.33 9.01 37.16 0.33 -1.00 16 23 C -0.14 -1.25 9.01 37.16 0.33 -0.91 16 24 C -0.12 -1.53 8.71 -39.59 -0.34 -1.88 16 25 C -0.12 -1.74 9.67 -39.58 -0.38 -2.13 16 26 H 0.01 0.25 8.14 -51.92 -0.42 -0.17 16 27 H 0.04 0.95 7.71 -51.93 -0.40 0.55 16 28 H 0.05 1.36 7.10 -51.93 -0.37 0.99 16 29 H 0.09 2.32 6.06 -51.93 -0.31 2.01 16 30 H 0.01 0.19 7.53 -51.93 -0.39 -0.20 16 31 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 32 H 0.33 6.62 7.37 -39.29 -0.29 6.33 16 33 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.06 1.10 7.61 -51.93 -0.40 0.70 16 35 H 0.05 0.81 8.13 -51.93 -0.42 0.39 16 36 H 0.12 1.85 7.31 -52.49 -0.38 1.46 16 37 H 0.11 1.32 7.95 -52.48 -0.42 0.91 16 38 H 0.07 0.69 7.88 -51.93 -0.41 0.29 16 39 H 0.06 0.52 7.39 -51.93 -0.38 0.14 16 40 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.06 0.49 7.39 -51.92 -0.38 0.10 16 45 H 0.11 1.25 7.10 -52.48 -0.37 0.88 16 46 H 0.12 1.56 8.04 -52.49 -0.42 1.13 16 LS Contribution 360.30 15.07 5.43 5.43 Total: -1.00 -27.41 360.30 -9.85 -37.27 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: -8.17 Total: 5.96 kcal Atomic # 6 Polarization: -23.84 SS G_CDS: -2.24 Total: -26.08 kcal Atomic # 7 Polarization: -38.74 SS G_CDS: 0.14 Total: -38.60 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -27.41 -9.85 -37.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054182120.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.495 kcal (2) G-P(sol) polarization free energy of solvation -27.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds