Wall clock time and date at job start Mon Mar 30 2020 01:24:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52992 * 109.47175 * 2 1 4 4 H 1.09001 * 109.47506 * 179.50877 * 3 2 1 5 5 C 1.50697 * 109.47251 * 299.51114 * 3 2 1 6 6 H 1.08000 * 120.00332 * 119.99657 * 5 3 2 7 7 C 1.37879 * 119.99891 * 300.00129 * 5 3 2 8 8 N 1.31509 * 119.99965 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 119.99894 * 179.97438 * 7 5 3 10 10 H 1.48509 * 109.46739 * 90.00464 * 9 7 5 11 11 H 1.48501 * 109.47036 * 209.99745 * 9 7 5 12 12 H 1.48496 * 109.47323 * 330.00126 * 9 7 5 13 13 N 1.46901 * 109.47209 * 59.50827 * 3 2 1 14 14 C 1.46906 * 110.99618 * 85.86102 * 13 3 2 15 15 H 1.08994 * 109.47295 * 327.25068 * 14 13 3 16 16 C 1.52991 * 109.47272 * 87.25785 * 14 13 3 17 17 C 1.50707 * 109.46765 * 207.25839 * 14 13 3 18 18 C 1.38236 * 119.99617 * 320.20178 * 17 14 13 19 19 C 1.38238 * 119.99488 * 180.26143 * 18 17 14 20 20 C 1.38232 * 120.00408 * 359.51278 * 19 18 17 21 21 C 1.50695 * 120.00182 * 180.25382 * 20 19 18 22 22 C 1.53003 * 109.47057 * 120.00303 * 21 20 19 23 23 C 1.53001 * 109.47388 * 240.00139 * 21 20 19 24 24 C 1.38232 * 119.99516 * 0.27979 * 20 19 18 25 25 C 1.38233 * 120.00520 * 359.95195 * 24 20 19 26 26 H 1.09008 * 109.46978 * 176.24280 * 1 2 3 27 27 H 1.08998 * 109.46993 * 296.23904 * 1 2 3 28 28 H 1.08996 * 109.46765 * 56.24245 * 1 2 3 29 29 H 1.09001 * 109.47230 * 239.99661 * 2 1 3 30 30 H 1.09001 * 109.46954 * 119.99988 * 2 1 3 31 31 H 0.97004 * 119.99721 * 179.97438 * 8 7 5 32 32 H 1.00895 * 111.00373 * 209.80873 * 13 3 2 33 33 H 1.09002 * 109.47209 * 179.97438 * 16 14 13 34 34 H 1.09002 * 109.47010 * 299.99657 * 16 14 13 35 35 H 1.09004 * 109.47394 * 59.99501 * 16 14 13 36 36 H 1.07999 * 120.00744 * 0.05270 * 18 17 14 37 37 H 1.08004 * 120.00065 * 179.78995 * 19 18 17 38 38 H 1.08998 * 109.47611 * 0.02562 * 21 20 19 39 39 H 1.09000 * 109.47250 * 60.00116 * 22 21 20 40 40 H 1.09002 * 109.47477 * 180.02562 * 22 21 20 41 41 H 1.09000 * 109.47159 * 300.00466 * 22 21 20 42 42 H 1.08998 * 109.46807 * 59.99990 * 23 21 20 43 43 H 1.08996 * 109.47253 * 180.02562 * 23 21 20 44 44 H 1.09010 * 109.47047 * 300.00117 * 23 21 20 45 45 H 1.08004 * 120.00064 * 179.97438 * 24 20 19 46 46 H 1.07995 * 120.00649 * 179.97438 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1300 1.4425 0.0088 5 6 1.5476 2.1493 -1.2364 6 1 0.9259 3.0277 -1.1449 7 6 1.8908 1.6747 -2.4847 8 7 2.6473 0.6048 -2.5962 9 14 1.2798 2.5506 -4.0174 10 1 2.2610 3.5914 -4.4169 11 1 1.1240 1.5681 -5.1200 12 1 -0.0308 3.1885 -3.7337 13 7 1.5407 2.1384 1.1935 14 6 2.4262 1.9124 2.3436 15 1 2.8646 0.9169 2.2746 16 6 3.5400 2.9613 2.3436 17 6 1.6312 2.0238 3.6191 18 6 0.6599 2.9993 3.7451 19 6 -0.0656 3.1049 4.9171 20 6 0.1732 2.2287 5.9592 21 6 -0.6216 2.3403 7.2346 22 6 -1.3814 1.0347 7.4779 23 6 0.3273 2.6039 8.4055 24 6 1.1416 1.2505 5.8315 25 6 1.8704 1.1479 4.6614 26 1 -0.3633 -1.0255 -0.0673 27 1 -0.3633 0.4543 0.9218 28 1 -0.3633 0.5710 -0.8544 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.8884 0.2707 -3.4744 32 1 1.4246 3.1246 1.0149 33 1 4.1968 2.7939 3.1973 34 1 4.1150 2.8807 1.4211 35 1 3.1016 3.9569 2.4126 36 1 0.4701 3.6811 2.9293 37 1 -0.8221 3.8692 5.0168 38 1 -1.3316 3.1629 7.1496 39 1 -0.6717 0.2117 7.5628 40 1 -1.9567 1.1154 8.4001 41 1 -2.0573 0.8468 6.6437 42 1 0.8685 3.5339 8.2322 43 1 -0.2476 2.6841 9.3281 44 1 1.0370 1.7808 8.4905 45 1 1.3285 0.5661 6.6459 46 1 2.6272 0.3839 4.5618 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054182120.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:11 Heat of formation + Delta-G solvation = -15.885390 kcal Electronic energy + Delta-G solvation = -21577.614591 eV Core-core repulsion = 18658.285075 eV Total energy + Delta-G solvation = -2919.329516 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.63843 -38.54495 -36.47659 -34.79239 -33.08951 -31.77814 -30.71360 -29.26603 -27.91713 -27.71155 -25.19451 -24.83833 -23.36049 -22.24320 -20.96164 -20.31140 -18.53790 -17.18522 -17.00114 -16.33107 -15.95480 -15.65048 -15.33972 -14.99647 -14.66059 -14.57807 -14.39588 -14.13798 -13.96197 -13.88841 -13.61896 -13.49508 -13.21891 -12.94454 -12.82325 -12.59957 -12.51566 -12.34439 -12.27514 -11.96140 -11.91595 -11.78613 -11.67029 -11.40380 -11.36934 -11.25533 -10.77244 -10.52326 -9.67810 -9.28227 -8.91263 -8.08280 -6.19966 0.57706 0.65062 1.41491 1.43654 1.53028 2.43268 2.96219 3.20625 3.65985 3.84992 3.95908 4.08230 4.21009 4.25660 4.39486 4.41517 4.43463 4.62454 4.65187 4.69369 4.74653 4.79111 4.85081 4.86545 4.93626 4.99862 5.04749 5.06084 5.15437 5.16438 5.28511 5.32955 5.34927 5.42605 5.44518 5.45081 5.56118 5.69142 5.73406 5.83051 5.85224 5.86234 5.96831 6.25699 6.29989 6.54899 6.84121 7.07147 7.48795 8.96801 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.030638 B = 0.003761 C = 0.003709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.668506 B = 7442.423298 C = 7547.112735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.098 4.098 3 C 0.226 3.774 4 H -0.032 1.032 5 C -0.521 4.521 6 H 0.057 0.943 7 C 0.017 3.983 8 N -0.917 5.917 9 Si 0.953 3.047 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.268 1.268 13 N -0.670 5.670 14 C 0.121 3.879 15 H 0.059 0.941 16 C -0.162 4.162 17 C -0.070 4.070 18 C -0.106 4.106 19 C -0.127 4.127 20 C -0.088 4.088 21 C -0.054 4.054 22 C -0.142 4.142 23 C -0.140 4.140 24 C -0.117 4.117 25 C -0.129 4.129 26 H 0.029 0.971 27 H 0.048 0.952 28 H 0.036 0.964 29 H 0.058 0.942 30 H 0.015 0.985 31 H 0.260 0.740 32 H 0.331 0.669 33 H 0.068 0.932 34 H 0.039 0.961 35 H 0.062 0.938 36 H 0.116 0.884 37 H 0.132 0.868 38 H 0.081 0.919 39 H 0.056 0.944 40 H 0.071 0.929 41 H 0.046 0.954 42 H 0.050 0.950 43 H 0.070 0.930 44 H 0.056 0.944 45 H 0.135 0.865 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.359 3.334 19.667 20.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.137 4.137 3 C 0.118 3.882 4 H -0.015 1.015 5 C -0.559 4.559 6 H 0.075 0.925 7 C -0.182 4.182 8 N -0.556 5.556 9 Si 0.779 3.221 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.193 1.193 13 N -0.300 5.300 14 C 0.010 3.990 15 H 0.077 0.923 16 C -0.221 4.221 17 C -0.071 4.071 18 C -0.124 4.124 19 C -0.145 4.145 20 C -0.089 4.089 21 C -0.072 4.072 22 C -0.200 4.200 23 C -0.197 4.197 24 C -0.135 4.135 25 C -0.148 4.148 26 H 0.048 0.952 27 H 0.067 0.933 28 H 0.055 0.945 29 H 0.076 0.924 30 H 0.033 0.967 31 H 0.069 0.931 32 H 0.149 0.851 33 H 0.087 0.913 34 H 0.059 0.941 35 H 0.081 0.919 36 H 0.134 0.866 37 H 0.150 0.850 38 H 0.099 0.901 39 H 0.075 0.925 40 H 0.090 0.910 41 H 0.065 0.935 42 H 0.069 0.931 43 H 0.089 0.911 44 H 0.075 0.925 45 H 0.152 0.848 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -4.716 2.708 19.690 20.427 hybrid contribution 0.874 0.696 -1.696 2.031 sum -3.842 3.404 17.994 18.712 Atomic orbital electron populations 1.21278 0.96142 0.98107 1.00683 1.21320 0.96132 0.98055 0.98182 1.18863 0.90811 0.91783 0.86745 1.01495 1.21451 1.31243 1.11899 0.91347 0.92482 1.25609 0.95288 0.95631 1.01698 1.70018 1.37689 1.23848 1.24094 0.85636 0.78861 0.78241 0.79365 1.20369 1.21236 1.19281 1.60710 1.48950 1.15508 1.04876 1.20407 0.90987 0.98191 0.89365 0.92262 1.22328 0.98963 0.99391 1.01374 1.19842 0.96991 0.95911 0.94364 1.20966 0.95649 0.98377 0.97418 1.21232 1.00204 0.99943 0.93074 1.20063 0.97066 0.95534 0.96193 1.20137 0.96394 0.99235 0.91443 1.21846 0.99983 0.96368 1.01757 1.21831 0.99115 1.01638 0.97156 1.21037 0.96213 0.98825 0.97423 1.21131 1.00711 0.99142 0.93773 0.95182 0.93281 0.94476 0.92386 0.96657 0.93093 0.85069 0.91300 0.94145 0.91941 0.86636 0.84993 0.90102 0.92516 0.90974 0.93531 0.93092 0.91078 0.92476 0.84769 0.86118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.77 9.52 71.98 0.69 -4.08 16 2 C -0.10 -4.88 5.57 30.59 0.17 -4.71 16 3 C 0.23 11.32 2.11 44.17 0.09 11.41 16 4 H -0.03 -1.82 7.28 -2.39 -0.02 -1.83 16 5 C -0.52 -27.94 7.29 25.60 0.19 -27.75 16 6 H 0.06 3.01 7.60 -2.91 -0.02 2.99 16 7 C 0.02 0.92 5.30 84.66 0.45 1.37 16 8 N -0.92 -52.66 11.31 21.45 0.24 -52.42 16 9 Si 0.95 43.43 29.54 68.60 2.03 45.46 16 10 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 11 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 12 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 13 N -0.67 -27.82 4.75 -477.17 -2.27 -30.09 16 14 C 0.12 4.35 2.59 44.17 0.11 4.46 16 15 H 0.06 2.33 7.04 -2.39 -0.02 2.31 16 16 C -0.16 -5.26 9.13 71.98 0.66 -4.60 16 17 C -0.07 -2.23 4.96 -19.86 -0.10 -2.33 16 18 C -0.11 -3.15 9.33 22.27 0.21 -2.94 16 19 C -0.13 -3.20 9.67 22.27 0.22 -2.99 16 20 C -0.09 -2.03 4.78 -19.87 -0.09 -2.12 16 21 C -0.05 -0.91 3.09 -11.54 -0.04 -0.95 16 22 C -0.14 -2.23 9.01 71.98 0.65 -1.58 16 23 C -0.14 -2.01 9.01 71.98 0.65 -1.36 16 24 C -0.12 -2.81 8.71 22.27 0.19 -2.61 16 25 C -0.13 -3.64 9.67 22.27 0.22 -3.43 16 26 H 0.03 1.22 8.14 -2.38 -0.02 1.20 16 27 H 0.05 2.14 7.71 -2.39 -0.02 2.12 16 28 H 0.04 1.80 7.10 -2.39 -0.02 1.78 16 29 H 0.06 3.22 6.06 -2.39 -0.01 3.21 16 30 H 0.01 0.70 7.53 -2.39 -0.02 0.69 16 31 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 32 H 0.33 13.51 7.37 -89.70 -0.66 12.84 16 33 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.04 1.47 7.61 -2.39 -0.02 1.45 16 35 H 0.06 1.89 8.13 -2.38 -0.02 1.87 16 36 H 0.12 3.48 7.31 -2.91 -0.02 3.46 16 37 H 0.13 2.77 7.95 -2.91 -0.02 2.75 16 38 H 0.08 1.27 7.88 -2.39 -0.02 1.25 16 39 H 0.06 0.88 7.39 -2.39 -0.02 0.86 16 40 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 43 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 44 H 0.06 0.81 7.39 -2.38 -0.02 0.79 16 45 H 0.13 2.60 7.10 -2.91 -0.02 2.58 16 46 H 0.12 3.17 8.04 -2.91 -0.02 3.15 16 Total: -1.00 -58.80 360.30 4.53 -54.27 By element: Atomic # 1 Polarization: 26.71 SS G_CDS: 0.27 Total: 26.98 kcal Atomic # 6 Polarization: -48.46 SS G_CDS: 4.26 Total: -44.20 kcal Atomic # 7 Polarization: -80.49 SS G_CDS: -2.03 Total: -82.51 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -58.80 4.53 -54.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054182120.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.388 kcal (2) G-P(sol) polarization free energy of solvation -58.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds