Wall clock time and date at job start Mon Mar 30 2020 01:24:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47029 * 2 1 4 4 H 1.08998 * 109.47413 * 54.92265 * 3 2 1 5 5 C 1.50697 * 109.47113 * 174.92384 * 3 2 1 6 6 H 1.08001 * 120.00514 * 115.13867 * 5 3 2 7 7 C 1.37885 * 119.99957 * 295.13552 * 5 3 2 8 8 N 1.31519 * 119.99835 * 349.54721 * 7 5 3 9 9 Si 1.86795 * 119.99929 * 169.54165 * 7 5 3 10 10 H 1.48506 * 109.46803 * 90.00599 * 9 7 5 11 11 H 1.48503 * 109.47310 * 210.00026 * 9 7 5 12 12 H 1.48494 * 109.47506 * 330.00708 * 9 7 5 13 13 N 1.46898 * 109.47288 * 294.92540 * 3 2 1 14 14 C 1.46898 * 111.00268 * 155.11303 * 13 3 2 15 15 H 1.08998 * 109.47058 * 32.41408 * 14 13 3 16 16 C 1.53004 * 109.46900 * 272.41617 * 14 13 3 17 17 C 1.50700 * 109.47191 * 152.41389 * 14 13 3 18 18 C 1.38232 * 119.99875 * 39.72975 * 17 14 13 19 19 C 1.38238 * 119.99550 * 179.78722 * 18 17 14 20 20 C 1.38227 * 120.00389 * 0.46052 * 19 18 17 21 21 C 1.50698 * 120.00332 * 179.79109 * 20 19 18 22 22 C 1.52998 * 109.47036 * 299.97840 * 21 20 19 23 23 C 1.52996 * 109.47097 * 59.97868 * 21 20 19 24 24 C 1.38241 * 119.99814 * 359.76784 * 20 19 18 25 25 C 1.38225 * 120.00139 * 0.02562 * 24 20 19 26 26 H 1.08997 * 109.46841 * 66.19343 * 1 2 3 27 27 H 1.08993 * 109.46870 * 186.19436 * 1 2 3 28 28 H 1.09004 * 109.46963 * 306.19898 * 1 2 3 29 29 H 1.09003 * 109.47217 * 240.00178 * 2 1 3 30 30 H 1.08992 * 109.47244 * 119.99649 * 2 1 3 31 31 H 0.96997 * 119.99451 * 358.60868 * 8 7 5 32 32 H 1.00892 * 111.00420 * 31.15470 * 13 3 2 33 33 H 1.08995 * 109.46987 * 65.20866 * 16 14 13 34 34 H 1.09000 * 109.46770 * 185.21067 * 16 14 13 35 35 H 1.08996 * 109.46800 * 305.20488 * 16 14 13 36 36 H 1.07999 * 120.00182 * 359.97438 * 18 17 14 37 37 H 1.08007 * 119.99906 * 180.25066 * 19 18 17 38 38 H 1.09004 * 109.47348 * 179.97438 * 21 20 19 39 39 H 1.09001 * 109.46975 * 180.02562 * 22 21 20 40 40 H 1.09003 * 109.47259 * 299.99501 * 22 21 20 41 41 H 1.08997 * 109.47586 * 59.99679 * 22 21 20 42 42 H 1.08998 * 109.47774 * 60.00039 * 23 21 20 43 43 H 1.08998 * 109.47376 * 180.02562 * 23 21 20 44 44 H 1.09005 * 109.47169 * 299.99470 * 23 21 20 45 45 H 1.08005 * 119.99934 * 180.02562 * 24 20 19 46 46 H 1.07996 * 120.00660 * 179.97438 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6044 1.9820 0.8410 5 6 3.5417 1.4444 0.1257 6 1 4.1511 1.8172 -0.6843 7 6 4.1379 0.9701 1.2750 8 7 3.4059 0.7095 2.3361 9 14 5.9853 0.6977 1.3248 10 1 6.6564 1.9395 1.7860 11 1 6.2971 -0.4110 2.2623 12 1 6.4709 0.3481 -0.0343 13 7 1.6529 2.0988 -1.2560 14 6 1.5765 3.5560 -1.0868 15 1 2.3159 3.8758 -0.3526 16 6 0.1771 3.9404 -0.6020 17 6 1.8541 4.2300 -2.4057 18 6 1.3457 3.6963 -3.5752 19 6 1.5967 4.3172 -4.7845 20 6 2.3639 5.4663 -4.8255 21 6 2.6415 6.1404 -6.1444 22 6 3.3807 5.1699 -7.0677 23 6 1.3194 6.5549 -6.7935 24 6 2.8762 5.9974 -3.6565 25 6 2.6218 5.3790 -2.4467 26 1 -0.3633 0.4148 -0.9402 27 1 -0.3633 -1.0216 0.1109 28 1 -0.3633 0.6070 0.8293 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5137 0.8899 31 1 2.4495 0.8700 2.3168 32 1 0.7810 1.7289 -1.6035 33 1 0.0117 3.5286 0.3935 34 1 0.0910 5.0263 -0.5651 35 1 -0.5681 3.5400 -1.2893 36 1 0.7500 2.7961 -3.5437 37 1 1.1962 3.9025 -5.6978 38 1 3.2574 7.0243 -5.9782 39 1 3.5818 5.6576 -8.0215 40 1 4.3226 4.8746 -6.6053 41 1 2.7648 4.2860 -7.2339 42 1 0.7927 7.2463 -6.1358 43 1 1.5201 7.0421 -7.7476 44 1 0.7035 5.6710 -6.9598 45 1 3.4753 6.8954 -3.6885 46 1 3.0223 5.7936 -1.5335 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054182124.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:16 Heat of formation + Delta-G solvation = -21.534283 kcal Electronic energy + Delta-G solvation = -21616.002487 eV Core-core repulsion = 18696.428016 eV Total energy + Delta-G solvation = -2919.574471 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.69767 -38.78360 -36.63050 -34.87923 -33.46003 -31.75037 -30.79559 -29.38206 -27.93503 -27.59848 -25.14277 -24.46224 -23.74814 -21.89003 -21.67482 -20.65892 -18.75376 -17.53565 -16.86271 -16.41129 -15.98359 -15.67068 -15.55780 -15.07766 -14.69022 -14.50730 -14.46110 -14.18991 -14.09844 -13.95761 -13.88130 -13.59700 -13.19185 -13.10366 -12.83944 -12.61920 -12.56005 -12.39989 -12.27847 -12.00731 -11.95517 -11.92606 -11.79116 -11.64322 -11.42556 -11.32955 -10.67036 -10.45759 -9.72461 -9.32420 -9.06306 -8.50936 -6.22823 0.52919 0.60150 1.51097 1.59095 1.78090 2.57168 2.90794 3.20435 3.51650 3.79356 3.92101 4.01347 4.16097 4.22930 4.29702 4.33041 4.37094 4.37986 4.39156 4.49366 4.57453 4.64642 4.68859 4.79809 4.84794 4.85078 4.96353 5.01601 5.03412 5.04696 5.09870 5.13868 5.16224 5.23023 5.31344 5.34481 5.39675 5.43342 5.53689 5.64640 5.80738 5.84034 6.07196 6.19539 6.21726 6.54813 6.62645 6.98595 7.52777 8.81508 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.018741 B = 0.004525 C = 0.004040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.676423 B = 6185.740407 C = 6929.256032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.120 4.120 3 C 0.216 3.784 4 H -0.033 1.033 5 C -0.587 4.587 6 H 0.035 0.965 7 C -0.027 4.027 8 N -0.935 5.935 9 Si 1.108 2.892 10 H -0.279 1.279 11 H -0.281 1.281 12 H -0.278 1.278 13 N -0.670 5.670 14 C 0.127 3.873 15 H 0.049 0.951 16 C -0.161 4.161 17 C -0.073 4.073 18 C -0.106 4.106 19 C -0.118 4.118 20 C -0.088 4.088 21 C -0.053 4.053 22 C -0.143 4.143 23 C -0.140 4.140 24 C -0.123 4.123 25 C -0.132 4.132 26 H 0.064 0.936 27 H 0.062 0.938 28 H 0.040 0.960 29 H 0.048 0.952 30 H 0.039 0.961 31 H 0.258 0.742 32 H 0.329 0.671 33 H 0.041 0.959 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.120 0.880 37 H 0.135 0.865 38 H 0.082 0.918 39 H 0.073 0.927 40 H 0.044 0.956 41 H 0.055 0.945 42 H 0.051 0.949 43 H 0.071 0.929 44 H 0.056 0.944 45 H 0.136 0.864 46 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.880 10.172 -16.500 20.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.159 4.159 3 C 0.107 3.893 4 H -0.016 1.016 5 C -0.626 4.626 6 H 0.053 0.947 7 C -0.226 4.226 8 N -0.573 5.573 9 Si 0.932 3.068 10 H -0.205 1.205 11 H -0.207 1.207 12 H -0.204 1.204 13 N -0.302 5.302 14 C 0.017 3.983 15 H 0.068 0.932 16 C -0.220 4.220 17 C -0.074 4.074 18 C -0.124 4.124 19 C -0.136 4.136 20 C -0.088 4.088 21 C -0.071 4.071 22 C -0.200 4.200 23 C -0.197 4.197 24 C -0.141 4.141 25 C -0.151 4.151 26 H 0.083 0.917 27 H 0.081 0.919 28 H 0.059 0.941 29 H 0.067 0.933 30 H 0.057 0.943 31 H 0.068 0.932 32 H 0.148 0.852 33 H 0.060 0.940 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.138 0.862 37 H 0.153 0.847 38 H 0.100 0.900 39 H 0.092 0.908 40 H 0.063 0.937 41 H 0.074 0.926 42 H 0.070 0.930 43 H 0.090 0.910 44 H 0.075 0.925 45 H 0.153 0.847 46 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -4.008 9.647 -15.782 18.926 hybrid contribution -1.901 0.387 0.310 1.965 sum -5.909 10.034 -15.472 19.364 Atomic orbital electron populations 1.21768 0.95221 1.01702 1.01135 1.21637 0.95244 0.98724 1.00275 1.19050 0.94311 0.90246 0.85668 1.01575 1.22238 0.92826 1.44509 1.03026 0.94657 1.26965 1.10046 0.93765 0.91798 1.70892 1.07987 1.48343 1.30087 0.83037 0.70610 0.77195 0.75994 1.20463 1.20673 1.20360 1.60575 1.36163 1.02541 1.30904 1.20277 0.96134 0.88474 0.93411 0.93222 1.22341 0.96632 1.02327 1.00656 1.19875 0.97622 0.94953 0.94959 1.20962 1.00219 0.99223 0.92021 1.21111 0.99195 0.95753 0.97547 1.20082 0.97472 0.95796 0.95410 1.20138 0.98004 0.98029 0.90956 1.21852 0.99780 0.99173 0.99213 1.21827 0.95794 1.01480 1.00602 1.21181 1.00677 1.00620 0.91657 1.21121 0.99107 0.96246 0.98620 0.91735 0.91859 0.94123 0.93324 0.94274 0.93178 0.85175 0.93960 0.91316 0.91197 0.86240 0.84676 0.89977 0.90801 0.93685 0.92560 0.93008 0.90967 0.92482 0.84655 0.86851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.99 9.62 71.98 0.69 -4.30 16 2 C -0.12 -5.52 5.25 30.60 0.16 -5.36 16 3 C 0.22 10.81 1.47 44.17 0.06 10.87 16 4 H -0.03 -1.82 6.63 -2.39 -0.02 -1.84 16 5 C -0.59 -33.84 8.43 25.60 0.22 -33.62 16 6 H 0.04 2.13 7.84 -2.91 -0.02 2.11 16 7 C -0.03 -1.59 5.14 84.66 0.43 -1.15 16 8 N -0.94 -56.89 12.91 21.45 0.28 -56.61 16 9 Si 1.11 52.16 29.92 68.60 2.05 54.21 16 10 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 11 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 12 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 13 N -0.67 -28.31 5.45 -477.17 -2.60 -30.91 16 14 C 0.13 4.94 2.59 44.17 0.11 5.05 16 15 H 0.05 2.29 7.47 -2.39 -0.02 2.28 16 16 C -0.16 -5.19 9.16 71.98 0.66 -4.53 16 17 C -0.07 -2.53 4.96 -19.86 -0.10 -2.63 16 18 C -0.11 -3.24 9.33 22.27 0.21 -3.03 16 19 C -0.12 -3.05 8.71 22.27 0.19 -2.85 16 20 C -0.09 -2.12 4.78 -19.87 -0.09 -2.22 16 21 C -0.05 -0.94 3.09 -11.54 -0.04 -0.98 16 22 C -0.14 -2.41 9.01 71.98 0.65 -1.76 16 23 C -0.14 -2.08 9.01 71.98 0.65 -1.43 16 24 C -0.12 -3.30 9.67 22.27 0.22 -3.08 16 25 C -0.13 -4.24 9.67 22.27 0.22 -4.03 16 26 H 0.06 1.98 6.65 -2.39 -0.02 1.97 16 27 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 28 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 29 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 30 H 0.04 2.02 6.46 -2.39 -0.02 2.01 16 31 H 0.26 15.80 6.29 -92.71 -0.58 15.22 16 32 H 0.33 12.17 5.68 -89.70 -0.51 11.66 16 33 H 0.04 1.46 7.68 -2.39 -0.02 1.45 16 34 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.07 1.98 8.03 -2.39 -0.02 1.96 16 36 H 0.12 3.51 7.32 -2.91 -0.02 3.49 16 37 H 0.14 2.84 7.10 -2.91 -0.02 2.82 16 38 H 0.08 1.34 7.88 -2.39 -0.02 1.32 16 39 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.06 0.95 7.39 -2.39 -0.02 0.94 16 42 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.06 0.85 7.39 -2.38 -0.02 0.83 16 45 H 0.14 2.94 7.95 -2.91 -0.02 2.92 16 46 H 0.11 3.58 8.04 -2.91 -0.02 3.56 16 Total: -1.00 -65.16 360.39 4.58 -60.58 By element: Atomic # 1 Polarization: 27.16 SS G_CDS: 0.61 Total: 27.76 kcal Atomic # 6 Polarization: -59.28 SS G_CDS: 4.24 Total: -55.04 kcal Atomic # 7 Polarization: -85.19 SS G_CDS: -2.32 Total: -87.52 kcal Atomic # 14 Polarization: 52.16 SS G_CDS: 2.05 Total: 54.21 kcal Total: -65.16 4.58 -60.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054182124.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.049 kcal (2) G-P(sol) polarization free energy of solvation -65.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds