Wall clock time and date at job start Mon Mar 30 2020 01:22:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47256 * 2 1 4 4 H 1.09005 * 109.47201 * 54.72762 * 3 2 1 5 5 C 1.50703 * 109.47533 * 174.72926 * 3 2 1 6 6 H 1.07994 * 119.99912 * 120.13788 * 5 3 2 7 7 C 1.37878 * 119.99510 * 300.14591 * 5 3 2 8 8 N 1.31521 * 119.99572 * 166.70997 * 7 5 3 9 9 Si 1.86791 * 120.00357 * 346.70346 * 7 5 3 10 10 H 1.48493 * 109.47414 * 264.65617 * 9 7 5 11 11 H 1.48497 * 109.47095 * 24.65727 * 9 7 5 12 12 H 1.48504 * 109.46953 * 144.65375 * 9 7 5 13 13 N 1.46901 * 109.47137 * 294.73329 * 3 2 1 14 14 C 1.46896 * 111.00247 * 101.50255 * 13 3 2 15 15 C 1.50701 * 109.47169 * 182.99287 * 14 13 3 16 16 C 1.38239 * 120.00139 * 269.72478 * 15 14 13 17 17 C 1.38234 * 119.99720 * 179.76759 * 16 15 14 18 18 C 1.38234 * 120.00169 * 0.50241 * 17 16 15 19 19 C 1.50703 * 119.99936 * 179.72411 * 18 17 16 20 20 C 1.53001 * 109.47241 * 240.02640 * 19 18 17 21 21 C 1.53004 * 109.46998 * 0.02988 * 19 18 17 22 22 C 1.53005 * 109.46824 * 120.02619 * 19 18 17 23 23 C 1.38236 * 120.00067 * 359.75383 * 18 17 16 24 24 C 1.38231 * 119.99823 * 359.97438 * 23 18 17 25 25 H 1.08999 * 109.47441 * 66.79296 * 1 2 3 26 26 H 1.09002 * 109.47417 * 186.79644 * 1 2 3 27 27 H 1.09005 * 109.46797 * 306.78913 * 1 2 3 28 28 H 1.09004 * 109.46856 * 240.00689 * 2 1 3 29 29 H 1.08993 * 109.47603 * 120.00071 * 2 1 3 30 30 H 0.97000 * 119.99659 * 179.97438 * 8 7 5 31 31 H 1.00895 * 110.99859 * 337.54328 * 13 3 2 32 32 H 1.09001 * 109.46894 * 302.99001 * 14 13 3 33 33 H 1.09000 * 109.47257 * 62.99248 * 14 13 3 34 34 H 1.07994 * 119.99631 * 359.97438 * 16 15 14 35 35 H 1.08001 * 119.99606 * 180.23104 * 17 16 15 36 36 H 1.08997 * 109.46983 * 59.99615 * 20 19 18 37 37 H 1.09000 * 109.47073 * 180.02562 * 20 19 18 38 38 H 1.09000 * 109.46766 * 300.00507 * 20 19 18 39 39 H 1.08989 * 109.47101 * 59.99544 * 21 19 18 40 40 H 1.09005 * 109.46660 * 180.02562 * 21 19 18 41 41 H 1.09001 * 109.46618 * 299.99523 * 21 19 18 42 42 H 1.09000 * 109.46811 * 60.00106 * 22 19 18 43 43 H 1.08997 * 109.46870 * 180.02562 * 22 19 18 44 44 H 1.08995 * 109.46959 * 299.99747 * 22 19 18 45 45 H 1.07998 * 119.99823 * 179.97438 * 23 18 17 46 46 H 1.08005 * 119.99632 * 179.97438 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6016 1.9829 0.8390 5 6 3.5413 1.4446 0.1305 6 1 4.1499 1.8899 -0.6425 7 6 4.1378 0.8777 1.2368 8 7 5.4317 0.6419 1.2378 9 14 3.1084 0.4449 2.7342 10 1 3.1735 1.5557 3.7175 11 1 1.6982 0.2319 2.3206 12 1 3.6353 -0.7971 3.3548 13 7 1.6569 2.0973 -1.2579 14 6 0.4908 2.9692 -1.0637 15 6 0.0830 3.5648 -2.3866 16 6 0.6196 4.7711 -2.7964 17 6 0.2491 5.3150 -4.0121 18 6 -0.6658 4.6578 -4.8133 19 6 -1.0743 5.2539 -6.1357 20 6 -2.5833 5.5067 -6.1368 21 6 -0.3353 6.5765 -6.3490 22 6 -0.7189 4.2834 -7.2640 23 6 -1.2064 3.4542 -4.4011 24 6 -0.8317 2.9075 -3.1880 25 1 -0.3634 0.4049 -0.9445 26 1 -0.3634 -1.0204 0.1216 27 1 -0.3633 0.6155 0.8231 28 1 1.8932 -0.5138 -0.8901 29 1 1.8933 -0.5138 0.8899 30 1 5.8515 0.2434 2.0163 31 1 1.4826 1.4162 -1.9816 32 1 -0.3356 2.3857 -0.6579 33 1 0.7467 3.7690 -0.3687 34 1 1.3308 5.2869 -2.1683 35 1 0.6712 6.2556 -4.3339 36 1 -2.8364 6.1980 -5.3330 37 1 -2.8788 5.9374 -7.0935 38 1 -3.1096 4.5644 -5.9848 39 1 0.7396 6.3964 -6.3482 40 1 -0.6312 7.0079 -7.3054 41 1 -0.5885 7.2678 -5.5452 42 1 -1.2454 3.3412 -7.1120 43 1 -1.0140 4.7147 -8.2205 44 1 0.3560 4.1034 -7.2632 45 1 -1.9215 2.9410 -5.0269 46 1 -1.2545 1.9673 -2.8659 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054182154.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:59 Heat of formation + Delta-G solvation = 9.039293 kcal Electronic energy + Delta-G solvation = -21336.635408 eV Core-core repulsion = 18418.386707 eV Total energy + Delta-G solvation = -2918.248701 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.85144 -37.32087 -36.00523 -32.62232 -31.61994 -30.95147 -29.56248 -27.51219 -27.40664 -27.27810 -24.48532 -22.46474 -22.17271 -21.30798 -19.97625 -19.14507 -16.89560 -16.29512 -15.49317 -15.09903 -14.78378 -14.50144 -14.40801 -13.99425 -13.82102 -13.50185 -13.28166 -13.19974 -12.76037 -12.64911 -12.30911 -12.06221 -11.88580 -11.85711 -11.79025 -11.66306 -11.42178 -11.20112 -11.07155 -10.93935 -10.76774 -10.58885 -10.44764 -10.28697 -9.89404 -9.28577 -9.22807 -8.70476 -8.39535 -8.33319 -7.28800 -6.02299 -3.94950 1.53430 1.62179 3.28648 3.37739 3.40789 3.92650 4.45479 4.50622 4.63309 4.85682 5.08858 5.12516 5.18685 5.19312 5.25222 5.38550 5.42059 5.44417 5.59207 5.63082 5.64524 5.70121 5.75630 5.76663 5.84465 5.86544 5.90426 5.94764 6.00561 6.07983 6.12812 6.14929 6.28049 6.31611 6.49299 6.58046 6.63725 6.76215 6.77370 6.85264 6.95944 7.19777 7.22244 7.79116 7.97456 8.36607 8.76186 9.14997 9.63695 11.11325 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.032308 B = 0.003580 C = 0.003423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.454817 B = 7818.267308 C = 8176.888014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.156 4.156 3 C 0.193 3.807 4 H 0.022 0.978 5 C -0.498 4.498 6 H 0.080 0.920 7 C 0.069 3.931 8 N -0.897 5.897 9 Si 0.856 3.144 10 H -0.284 1.284 11 H -0.247 1.247 12 H -0.288 1.288 13 N -0.664 5.664 14 C 0.091 3.909 15 C -0.072 4.072 16 C -0.095 4.095 17 C -0.123 4.123 18 C -0.081 4.081 19 C -0.028 4.028 20 C -0.137 4.137 21 C -0.144 4.144 22 C -0.138 4.138 23 C -0.118 4.118 24 C -0.115 4.115 25 H 0.044 0.956 26 H 0.041 0.959 27 H 0.045 0.955 28 H 0.058 0.942 29 H 0.065 0.935 30 H 0.261 0.739 31 H 0.328 0.672 32 H 0.031 0.969 33 H 0.073 0.927 34 H 0.123 0.877 35 H 0.122 0.878 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.056 0.944 39 H 0.060 0.940 40 H 0.055 0.945 41 H 0.058 0.942 42 H 0.056 0.944 43 H 0.055 0.945 44 H 0.057 0.943 45 H 0.114 0.886 46 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.323 8.015 -13.285 22.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.195 4.195 3 C 0.084 3.916 4 H 0.040 0.960 5 C -0.536 4.536 6 H 0.098 0.902 7 C -0.132 4.132 8 N -0.536 5.536 9 Si 0.684 3.316 10 H -0.210 1.210 11 H -0.171 1.171 12 H -0.215 1.215 13 N -0.294 5.294 14 C -0.038 4.038 15 C -0.073 4.073 16 C -0.114 4.114 17 C -0.141 4.141 18 C -0.081 4.081 19 C -0.028 4.028 20 C -0.194 4.194 21 C -0.201 4.201 22 C -0.195 4.195 23 C -0.136 4.136 24 C -0.134 4.134 25 H 0.063 0.937 26 H 0.060 0.940 27 H 0.064 0.936 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.071 0.929 31 H 0.145 0.855 32 H 0.049 0.951 33 H 0.091 0.909 34 H 0.141 0.859 35 H 0.140 0.860 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.074 0.926 41 H 0.077 0.923 42 H 0.075 0.925 43 H 0.074 0.926 44 H 0.076 0.924 45 H 0.132 0.868 46 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -15.704 8.449 -13.089 22.120 hybrid contribution -1.059 -1.059 1.094 1.855 sum -16.763 7.390 -11.994 21.897 Atomic orbital electron populations 1.21944 0.98512 1.00227 1.00411 1.22740 0.92846 1.01700 1.02185 1.19583 0.96714 0.88106 0.87179 0.95971 1.21022 0.89116 1.36906 1.06569 0.90171 1.24927 0.94733 0.95121 0.98431 1.69965 1.10322 1.43599 1.29675 0.87431 0.82338 0.77955 0.83898 1.21029 1.17147 1.21455 1.60690 1.33589 1.25297 1.09848 1.21073 0.92851 0.97157 0.92722 1.20008 0.95689 0.94801 0.96763 1.21088 0.98646 0.95521 0.96149 1.21135 0.98122 1.00238 0.94578 1.19698 0.97590 0.95262 0.95535 1.19468 0.95632 0.95305 0.92425 1.21880 0.94243 1.01767 1.01537 1.21958 1.00496 0.96186 1.01435 1.21886 1.01931 0.98721 0.96988 1.20826 1.00586 0.95770 0.96419 1.21007 0.98216 0.99573 0.94610 0.93655 0.93981 0.93570 0.92362 0.91707 0.92861 0.85456 0.95093 0.90855 0.85886 0.86024 0.92569 0.92616 0.92530 0.92129 0.92643 0.92306 0.92498 0.92634 0.92358 0.86753 0.86673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 8.63 37.15 0.32 -2.32 16 2 C -0.16 -3.29 4.37 -26.73 -0.12 -3.41 16 3 C 0.19 4.47 1.75 -68.86 -0.12 4.35 16 4 H 0.02 0.53 6.67 -51.93 -0.35 0.19 16 5 C -0.50 -14.07 9.35 -34.44 -0.32 -14.39 16 6 H 0.08 2.53 8.06 -52.49 -0.42 2.11 16 7 C 0.07 1.99 5.35 -17.82 -0.10 1.89 16 8 N -0.90 -27.60 13.96 55.43 0.77 -26.83 16 9 Si 0.86 20.97 25.68 -169.99 -4.37 16.61 16 10 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 11 H -0.25 -5.59 5.15 56.52 0.29 -5.30 16 12 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 13 N -0.66 -13.54 6.08 -109.22 -0.66 -14.21 16 14 C 0.09 1.56 5.21 -4.98 -0.03 1.54 16 15 C -0.07 -1.10 5.36 -104.62 -0.56 -1.66 16 16 C -0.10 -1.40 9.70 -39.58 -0.38 -1.78 16 17 C -0.12 -1.56 8.98 -39.58 -0.36 -1.92 16 18 C -0.08 -0.95 4.76 -104.62 -0.50 -1.45 16 19 C -0.03 -0.26 0.85 -155.65 -0.13 -0.40 16 20 C -0.14 -1.13 8.29 37.16 0.31 -0.83 16 21 C -0.14 -1.21 7.13 37.16 0.27 -0.95 16 22 C -0.14 -1.22 8.29 37.16 0.31 -0.91 16 23 C -0.12 -1.44 8.71 -39.58 -0.34 -1.78 16 24 C -0.12 -1.58 9.70 -39.58 -0.38 -1.96 16 25 H 0.04 0.70 6.72 -51.93 -0.35 0.36 16 26 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.05 0.79 8.08 -51.93 -0.42 0.37 16 28 H 0.06 1.22 8.03 -51.93 -0.42 0.81 16 29 H 0.06 1.46 4.10 -51.93 -0.21 1.25 16 30 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 31 H 0.33 6.39 7.94 -39.29 -0.31 6.08 16 32 H 0.03 0.51 5.98 -51.93 -0.31 0.20 16 33 H 0.07 1.30 8.08 -51.93 -0.42 0.88 16 34 H 0.12 1.78 8.06 -52.49 -0.42 1.36 16 35 H 0.12 1.33 5.90 -52.49 -0.31 1.02 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.06 0.46 7.39 -51.93 -0.38 0.08 16 39 H 0.06 0.53 7.51 -51.94 -0.39 0.14 16 40 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.06 0.49 7.51 -51.93 -0.39 0.10 16 42 H 0.06 0.49 7.39 -51.93 -0.38 0.11 16 43 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.11 1.18 7.10 -52.49 -0.37 0.81 16 46 H 0.12 1.45 8.06 -52.48 -0.42 1.02 16 LS Contribution 351.25 15.07 5.29 5.29 Total: -1.00 -30.09 351.25 -9.17 -39.26 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -8.07 Total: 5.86 kcal Atomic # 6 Polarization: -23.84 SS G_CDS: -2.14 Total: -25.98 kcal Atomic # 7 Polarization: -41.14 SS G_CDS: 0.11 Total: -41.03 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -4.37 Total: 16.61 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.09 -9.17 -39.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054182154.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.296 kcal (2) G-P(sol) polarization free energy of solvation -30.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds