Wall clock time and date at job start Mon Mar 30 2020 01:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47256 * 2 1 4 4 H 1.09005 * 109.47201 * 54.72762 * 3 2 1 5 5 C 1.50703 * 109.47533 * 174.72926 * 3 2 1 6 6 H 1.07994 * 119.99912 * 120.13788 * 5 3 2 7 7 C 1.37878 * 119.99510 * 300.14591 * 5 3 2 8 8 N 1.31521 * 119.99572 * 166.70997 * 7 5 3 9 9 Si 1.86791 * 120.00357 * 346.70346 * 7 5 3 10 10 H 1.48493 * 109.47414 * 264.65617 * 9 7 5 11 11 H 1.48497 * 109.47095 * 24.65727 * 9 7 5 12 12 H 1.48504 * 109.46953 * 144.65375 * 9 7 5 13 13 N 1.46901 * 109.47137 * 294.73329 * 3 2 1 14 14 C 1.46896 * 111.00247 * 101.50255 * 13 3 2 15 15 C 1.50701 * 109.47169 * 182.99287 * 14 13 3 16 16 C 1.38239 * 120.00139 * 269.72478 * 15 14 13 17 17 C 1.38234 * 119.99720 * 179.76759 * 16 15 14 18 18 C 1.38234 * 120.00169 * 0.50241 * 17 16 15 19 19 C 1.50703 * 119.99936 * 179.72411 * 18 17 16 20 20 C 1.53001 * 109.47241 * 240.02640 * 19 18 17 21 21 C 1.53004 * 109.46998 * 0.02988 * 19 18 17 22 22 C 1.53005 * 109.46824 * 120.02619 * 19 18 17 23 23 C 1.38236 * 120.00067 * 359.75383 * 18 17 16 24 24 C 1.38231 * 119.99823 * 359.97438 * 23 18 17 25 25 H 1.08999 * 109.47441 * 66.79296 * 1 2 3 26 26 H 1.09002 * 109.47417 * 186.79644 * 1 2 3 27 27 H 1.09005 * 109.46797 * 306.78913 * 1 2 3 28 28 H 1.09004 * 109.46856 * 240.00689 * 2 1 3 29 29 H 1.08993 * 109.47603 * 120.00071 * 2 1 3 30 30 H 0.97000 * 119.99659 * 179.97438 * 8 7 5 31 31 H 1.00895 * 110.99859 * 337.54328 * 13 3 2 32 32 H 1.09001 * 109.46894 * 302.99001 * 14 13 3 33 33 H 1.09000 * 109.47257 * 62.99248 * 14 13 3 34 34 H 1.07994 * 119.99631 * 359.97438 * 16 15 14 35 35 H 1.08001 * 119.99606 * 180.23104 * 17 16 15 36 36 H 1.08997 * 109.46983 * 59.99615 * 20 19 18 37 37 H 1.09000 * 109.47073 * 180.02562 * 20 19 18 38 38 H 1.09000 * 109.46766 * 300.00507 * 20 19 18 39 39 H 1.08989 * 109.47101 * 59.99544 * 21 19 18 40 40 H 1.09005 * 109.46660 * 180.02562 * 21 19 18 41 41 H 1.09001 * 109.46618 * 299.99523 * 21 19 18 42 42 H 1.09000 * 109.46811 * 60.00106 * 22 19 18 43 43 H 1.08997 * 109.46870 * 180.02562 * 22 19 18 44 44 H 1.08995 * 109.46959 * 299.99747 * 22 19 18 45 45 H 1.07998 * 119.99823 * 179.97438 * 23 18 17 46 46 H 1.08005 * 119.99632 * 179.97438 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6016 1.9829 0.8390 5 6 3.5413 1.4446 0.1305 6 1 4.1499 1.8899 -0.6425 7 6 4.1378 0.8777 1.2368 8 7 5.4317 0.6419 1.2378 9 14 3.1084 0.4449 2.7342 10 1 3.1735 1.5557 3.7175 11 1 1.6982 0.2319 2.3206 12 1 3.6353 -0.7971 3.3548 13 7 1.6569 2.0973 -1.2579 14 6 0.4908 2.9692 -1.0637 15 6 0.0830 3.5648 -2.3866 16 6 0.6196 4.7711 -2.7964 17 6 0.2491 5.3150 -4.0121 18 6 -0.6658 4.6578 -4.8133 19 6 -1.0743 5.2539 -6.1357 20 6 -2.5833 5.5067 -6.1368 21 6 -0.3353 6.5765 -6.3490 22 6 -0.7189 4.2834 -7.2640 23 6 -1.2064 3.4542 -4.4011 24 6 -0.8317 2.9075 -3.1880 25 1 -0.3634 0.4049 -0.9445 26 1 -0.3634 -1.0204 0.1216 27 1 -0.3633 0.6155 0.8231 28 1 1.8932 -0.5138 -0.8901 29 1 1.8933 -0.5138 0.8899 30 1 5.8515 0.2434 2.0163 31 1 1.4826 1.4162 -1.9816 32 1 -0.3356 2.3857 -0.6579 33 1 0.7467 3.7690 -0.3687 34 1 1.3308 5.2869 -2.1683 35 1 0.6712 6.2556 -4.3339 36 1 -2.8364 6.1980 -5.3330 37 1 -2.8788 5.9374 -7.0935 38 1 -3.1096 4.5644 -5.9848 39 1 0.7396 6.3964 -6.3482 40 1 -0.6312 7.0079 -7.3054 41 1 -0.5885 7.2678 -5.5452 42 1 -1.2454 3.3412 -7.1120 43 1 -1.0140 4.7147 -8.2205 44 1 0.3560 4.1034 -7.2632 45 1 -1.9215 2.9410 -5.0269 46 1 -1.2545 1.9673 -2.8659 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054182154.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:58 Heat of formation + Delta-G solvation = -8.164109 kcal Electronic energy + Delta-G solvation = -21337.381404 eV Core-core repulsion = 18418.386707 eV Total energy + Delta-G solvation = -2918.994696 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.82396 -38.71581 -37.16604 -34.52012 -33.22720 -31.95060 -30.87587 -29.03568 -28.18925 -28.05233 -25.92999 -24.11205 -23.18317 -22.44800 -21.76776 -20.01093 -18.85016 -17.42629 -16.97925 -16.56842 -15.98355 -15.79739 -15.58340 -15.10977 -14.90360 -14.81227 -14.46810 -14.40598 -14.23237 -13.71038 -13.45532 -13.36245 -13.33045 -12.90331 -12.76567 -12.66535 -12.62264 -12.50206 -12.40245 -12.16517 -12.13907 -11.78047 -11.70198 -11.45137 -11.29763 -11.26525 -11.05210 -10.54986 -9.73725 -9.42052 -8.90000 -8.25728 -6.23752 0.48582 0.58761 1.33691 1.38524 1.46827 2.37068 2.86870 3.07620 3.68108 3.75394 3.86055 4.05288 4.13983 4.16839 4.22110 4.29095 4.38533 4.43888 4.46212 4.52183 4.62778 4.73225 4.76270 4.82852 4.84257 4.89905 4.93914 5.05141 5.06995 5.09108 5.09176 5.16399 5.21829 5.22035 5.25527 5.30517 5.41585 5.48820 5.51275 5.64304 5.73610 5.80486 5.84508 6.06935 6.20027 6.71870 6.81188 6.82411 7.39952 8.92018 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.032308 B = 0.003580 C = 0.003423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.454817 B = 7818.267308 C = 8176.888014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.153 4.153 3 C 0.199 3.801 4 H 0.022 0.978 5 C -0.507 4.507 6 H 0.027 0.973 7 C 0.010 3.990 8 N -0.950 5.950 9 Si 0.926 3.074 10 H -0.284 1.284 11 H -0.213 1.213 12 H -0.287 1.287 13 N -0.679 5.679 14 C 0.098 3.902 15 C -0.092 4.092 16 C -0.114 4.114 17 C -0.128 4.128 18 C -0.077 4.077 19 C -0.029 4.029 20 C -0.135 4.135 21 C -0.144 4.144 22 C -0.137 4.137 23 C -0.118 4.118 24 C -0.118 4.118 25 H 0.061 0.939 26 H 0.064 0.936 27 H 0.050 0.950 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.263 0.737 31 H 0.333 0.667 32 H 0.047 0.953 33 H 0.060 0.940 34 H 0.112 0.888 35 H 0.136 0.864 36 H 0.050 0.950 37 H 0.071 0.929 38 H 0.059 0.941 39 H 0.053 0.947 40 H 0.070 0.930 41 H 0.058 0.942 42 H 0.059 0.941 43 H 0.072 0.928 44 H 0.045 0.955 45 H 0.138 0.862 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.823 7.803 -14.151 25.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.192 4.192 3 C 0.090 3.910 4 H 0.040 0.960 5 C -0.545 4.545 6 H 0.046 0.954 7 C -0.187 4.187 8 N -0.591 5.591 9 Si 0.750 3.250 10 H -0.210 1.210 11 H -0.135 1.135 12 H -0.213 1.213 13 N -0.310 5.310 14 C -0.030 4.030 15 C -0.093 4.093 16 C -0.133 4.133 17 C -0.146 4.146 18 C -0.077 4.077 19 C -0.029 4.029 20 C -0.192 4.192 21 C -0.201 4.201 22 C -0.195 4.195 23 C -0.136 4.136 24 C -0.137 4.137 25 H 0.080 0.920 26 H 0.083 0.917 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.151 0.849 32 H 0.065 0.935 33 H 0.078 0.922 34 H 0.130 0.870 35 H 0.153 0.847 36 H 0.070 0.930 37 H 0.090 0.910 38 H 0.078 0.922 39 H 0.072 0.928 40 H 0.089 0.911 41 H 0.077 0.923 42 H 0.078 0.922 43 H 0.091 0.909 44 H 0.064 0.936 45 H 0.156 0.844 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -19.235 8.248 -13.977 25.167 hybrid contribution 0.096 -0.897 1.196 1.498 sum -19.140 7.351 -12.781 24.161 Atomic orbital electron populations 1.21856 0.94852 1.02003 1.01561 1.22580 0.96047 0.99324 1.01296 1.19351 0.93212 0.90012 0.88434 0.96017 1.21335 0.91924 1.35995 1.05261 0.95433 1.25829 0.95912 0.95151 1.01808 1.70127 1.12686 1.45420 1.30821 0.86309 0.82293 0.77401 0.78976 1.21050 1.13530 1.21346 1.60476 1.36138 1.25527 1.08816 1.20990 0.91865 0.96225 0.93945 1.19887 0.97342 0.95489 0.96550 1.21154 0.99109 0.95916 0.97116 1.21326 0.98381 1.00902 0.93997 1.20066 0.96391 0.94963 0.96300 1.19545 0.96622 0.95643 0.91082 1.21865 0.93073 1.01960 1.02300 1.21965 0.99988 0.95854 1.02336 1.21886 1.01177 0.98827 0.97564 1.21112 1.00609 0.95805 0.96075 1.21170 0.97693 0.99944 0.94860 0.92042 0.91708 0.93135 0.92941 0.93044 0.92797 0.84882 0.93538 0.92176 0.86990 0.84674 0.93046 0.91024 0.92229 0.92838 0.91071 0.92325 0.92243 0.90938 0.93586 0.84429 0.85365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.47 8.63 71.98 0.62 -3.85 16 2 C -0.15 -6.22 4.37 30.59 0.13 -6.08 16 3 C 0.20 9.21 1.75 44.17 0.08 9.28 16 4 H 0.02 1.02 6.67 -2.38 -0.02 1.00 16 5 C -0.51 -29.73 9.35 25.60 0.24 -29.49 16 6 H 0.03 1.85 8.06 -2.91 -0.02 1.82 16 7 C 0.01 0.57 5.35 84.65 0.45 1.02 16 8 N -0.95 -60.77 13.96 21.45 0.30 -60.47 16 9 Si 0.93 43.59 25.68 68.60 1.76 45.35 16 10 H -0.28 -13.31 7.11 99.48 0.71 -12.61 16 11 H -0.21 -8.78 5.15 99.48 0.51 -8.27 16 12 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 13 N -0.68 -27.82 6.08 -499.46 -3.04 -30.86 16 14 C 0.10 3.32 5.21 85.56 0.45 3.76 16 15 C -0.09 -2.76 5.36 -19.86 -0.11 -2.87 16 16 C -0.11 -3.37 9.70 22.27 0.22 -3.16 16 17 C -0.13 -3.17 8.98 22.27 0.20 -2.97 16 18 C -0.08 -1.68 4.76 -19.87 -0.09 -1.77 16 19 C -0.03 -0.47 0.85 -52.92 -0.05 -0.51 16 20 C -0.13 -1.82 8.29 71.98 0.60 -1.22 16 21 C -0.14 -2.13 7.13 71.98 0.51 -1.62 16 22 C -0.14 -2.06 8.29 71.98 0.60 -1.47 16 23 C -0.12 -2.59 8.71 22.27 0.19 -2.40 16 24 C -0.12 -2.99 9.70 22.27 0.22 -2.78 16 25 H 0.06 1.69 6.72 -2.39 -0.02 1.67 16 26 H 0.06 1.72 8.14 -2.39 -0.02 1.71 16 27 H 0.05 1.52 8.08 -2.38 -0.02 1.50 16 28 H 0.05 2.16 8.03 -2.39 -0.02 2.14 16 29 H 0.05 2.20 4.10 -2.39 -0.01 2.19 16 30 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 31 H 0.33 12.89 7.94 -89.70 -0.71 12.17 16 32 H 0.05 1.42 5.98 -2.39 -0.01 1.41 16 33 H 0.06 2.15 8.08 -2.39 -0.02 2.13 16 34 H 0.11 3.42 8.06 -2.91 -0.02 3.40 16 35 H 0.14 2.87 5.90 -2.91 -0.02 2.85 16 36 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.06 0.77 7.39 -2.39 -0.02 0.75 16 39 H 0.05 0.86 7.51 -2.39 -0.02 0.84 16 40 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 41 H 0.06 0.86 7.51 -2.39 -0.02 0.85 16 42 H 0.06 0.86 7.39 -2.39 -0.02 0.84 16 43 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 45 H 0.14 2.36 7.10 -2.91 -0.02 2.34 16 46 H 0.13 2.85 8.06 -2.91 -0.02 2.83 16 Total: -1.00 -67.71 351.25 3.31 -64.40 By element: Atomic # 1 Polarization: 27.68 SS G_CDS: 0.03 Total: 27.71 kcal Atomic # 6 Polarization: -50.39 SS G_CDS: 4.26 Total: -46.13 kcal Atomic # 7 Polarization: -88.59 SS G_CDS: -2.74 Total: -91.33 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 1.76 Total: 45.35 kcal Total: -67.71 3.31 -64.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054182154.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.232 kcal (2) G-P(sol) polarization free energy of solvation -67.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds