Wall clock time and date at job start Mon Mar 30 2020 01:25:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47130 * 2 1 4 4 H 1.09006 * 109.47246 * 55.47268 * 3 2 1 5 5 C 1.50699 * 109.47124 * 175.47251 * 3 2 1 6 6 H 1.07996 * 119.99838 * 120.00470 * 5 3 2 7 7 C 1.37879 * 119.99829 * 299.99757 * 5 3 2 8 8 N 1.31514 * 120.00143 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 119.99786 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.46993 * 90.00274 * 9 7 5 11 11 H 1.48500 * 109.47001 * 210.00025 * 9 7 5 12 12 H 1.48500 * 109.47058 * 330.00454 * 9 7 5 13 13 N 1.46902 * 109.47190 * 295.47401 * 3 2 1 14 14 C 1.46890 * 111.00095 * 101.52575 * 13 3 2 15 15 H 1.09003 * 109.47888 * 322.41119 * 14 13 3 16 16 C 1.53001 * 109.47288 * 202.41188 * 14 13 3 17 17 C 1.53002 * 109.47217 * 174.20912 * 16 14 13 18 18 C 1.53002 * 109.46950 * 175.87242 * 17 16 14 19 19 C 1.52995 * 109.47038 * 295.87129 * 17 16 14 20 20 C 1.50707 * 109.47331 * 82.41180 * 14 13 3 21 21 C 1.38235 * 119.99714 * 39.72259 * 20 14 13 22 22 C 1.38237 * 119.99883 * 179.78914 * 21 20 14 23 23 C 1.38226 * 119.99903 * 0.44434 * 22 21 20 24 24 C 1.38235 * 120.00161 * 359.81124 * 23 22 21 25 25 C 1.38230 * 120.00258 * 220.00143 * 20 14 13 26 26 H 1.09001 * 109.47144 * 58.87807 * 1 2 3 27 27 H 1.09001 * 109.47084 * 178.87733 * 1 2 3 28 28 H 1.08994 * 109.47661 * 298.88309 * 1 2 3 29 29 H 1.09004 * 109.47113 * 119.99355 * 2 1 3 30 30 H 1.08996 * 109.47487 * 239.99623 * 2 1 3 31 31 H 0.96998 * 119.99818 * 179.97438 * 8 7 5 32 32 H 1.00900 * 110.99835 * 225.48247 * 13 3 2 33 33 H 1.09005 * 109.46741 * 294.21105 * 16 14 13 34 34 H 1.08996 * 109.47328 * 54.20337 * 16 14 13 35 35 H 1.08999 * 109.47348 * 55.87803 * 17 16 14 36 36 H 1.09003 * 109.47256 * 64.85468 * 18 17 16 37 37 H 1.08997 * 109.46919 * 184.85156 * 18 17 16 38 38 H 1.08998 * 109.47042 * 304.85633 * 18 17 16 39 39 H 1.08999 * 109.47368 * 305.73161 * 19 17 16 40 40 H 1.08995 * 109.47223 * 65.73463 * 19 17 16 41 41 H 1.09001 * 109.46892 * 185.73588 * 19 17 16 42 42 H 1.08005 * 119.99726 * 0.02562 * 21 20 14 43 43 H 1.08006 * 119.99713 * 180.27557 * 22 21 20 44 44 H 1.08008 * 120.00239 * 179.83190 * 23 22 21 45 45 H 1.08004 * 120.00125 * 179.97438 * 24 23 22 46 46 H 1.08000 * 120.00060 * 359.97425 * 25 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6119 1.9793 0.8467 5 6 3.5428 1.4440 0.1122 6 1 4.1420 1.8907 -0.6674 7 6 4.1527 0.8751 1.2101 8 7 3.4230 0.3307 2.1592 9 14 6.0155 0.8775 1.3494 10 1 6.4576 2.1086 2.0526 11 1 6.4561 -0.3156 2.1159 12 1 6.6136 0.8417 -0.0093 13 7 1.6416 2.1027 -1.2504 14 6 0.4783 2.9742 -1.0380 15 1 -0.2032 2.5043 -0.3289 16 6 -0.2433 3.1949 -2.3690 17 6 -1.5329 3.9814 -2.1257 18 6 -2.2020 4.2912 -3.4664 19 6 -2.4827 3.1490 -1.2620 20 6 0.9376 4.3006 -0.4897 21 6 2.0929 4.8857 -0.9733 22 6 2.5119 6.1045 -0.4735 23 6 1.7807 6.7338 0.5164 24 6 0.6283 6.1462 1.0038 25 6 0.2069 4.9295 0.5009 26 1 -0.3633 0.5312 -0.8798 27 1 -0.3633 -1.0275 -0.0201 28 1 -0.3634 0.4963 0.8998 29 1 1.8933 -0.5137 0.8901 30 1 1.8933 -0.5139 -0.8899 31 1 3.8521 -0.0699 2.9314 32 1 2.4120 2.6186 -1.6482 33 1 0.4029 3.7563 -3.0439 34 1 -0.4847 2.2304 -2.8158 35 1 -1.2984 4.9141 -1.6127 36 1 -2.5142 3.3606 -3.9403 37 1 -3.0735 4.9243 -3.2998 38 1 -1.4949 4.8093 -4.1141 39 1 -2.6368 2.1750 -1.7265 40 1 -2.0491 3.0145 -0.2712 41 1 -3.4390 3.6645 -1.1733 42 1 2.6661 4.3923 -1.7444 43 1 3.4122 6.5637 -0.8545 44 1 2.1095 7.6848 0.9089 45 1 0.0571 6.6377 1.7776 46 1 -0.6935 4.4705 0.8816 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054182287.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:17 Heat of formation + Delta-G solvation = -1.757929 kcal Electronic energy + Delta-G solvation = -22534.233177 eV Core-core repulsion = 19615.516273 eV Total energy + Delta-G solvation = -2918.716904 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.45616 -36.86382 -35.46577 -32.89118 -31.35400 -30.57170 -29.49545 -28.11005 -27.02296 -25.82284 -23.16736 -22.73967 -22.00613 -20.58054 -19.30543 -19.18068 -17.08737 -16.13039 -15.27604 -14.88473 -14.83655 -14.47746 -13.95081 -13.81369 -13.69674 -13.18384 -12.98495 -12.65524 -12.50812 -12.31170 -12.09709 -11.90808 -11.77732 -11.53526 -11.30703 -11.10937 -10.90339 -10.85216 -10.68742 -10.68513 -10.51557 -10.33385 -10.09946 -10.00669 -9.60307 -9.38426 -8.79943 -8.50581 -8.42108 -8.22813 -7.25627 -5.99582 -4.06421 1.79343 1.80990 3.29836 3.36657 3.39609 4.20833 4.41728 4.92867 5.07021 5.14993 5.26041 5.27505 5.30602 5.34971 5.48028 5.54977 5.72977 5.78635 5.85988 5.92876 5.95062 5.98382 6.05026 6.11798 6.25927 6.29573 6.37054 6.41207 6.43625 6.45785 6.47238 6.62182 6.65816 6.70905 6.85737 6.88570 7.04954 7.12185 7.19917 7.41914 7.48914 7.62341 7.79965 8.00347 8.29069 8.41833 8.70522 9.05070 9.59014 11.05358 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.015312 B = 0.006678 C = 0.005304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.165472 B = 4191.808659 C = 5277.798996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.106 4.106 3 C 0.220 3.780 4 H 0.010 0.990 5 C -0.522 4.522 6 H 0.056 0.944 7 C 0.065 3.935 8 N -0.887 5.887 9 Si 0.891 3.109 10 H -0.282 1.282 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.680 5.680 14 C 0.121 3.879 15 H 0.086 0.914 16 C -0.097 4.097 17 C -0.099 4.099 18 C -0.144 4.144 19 C -0.147 4.147 20 C -0.085 4.085 21 C -0.106 4.106 22 C -0.119 4.119 23 C -0.133 4.133 24 C -0.124 4.124 25 C -0.115 4.115 26 H 0.047 0.953 27 H 0.027 0.973 28 H 0.034 0.966 29 H 0.088 0.912 30 H 0.036 0.964 31 H 0.260 0.740 32 H 0.331 0.669 33 H 0.056 0.944 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.052 0.948 37 H 0.048 0.952 38 H 0.051 0.949 39 H 0.054 0.946 40 H 0.056 0.944 41 H 0.047 0.953 42 H 0.120 0.880 43 H 0.115 0.885 44 H 0.113 0.887 45 H 0.113 0.887 46 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.768 9.210 -6.059 14.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.144 4.144 3 C 0.112 3.888 4 H 0.028 0.972 5 C -0.560 4.560 6 H 0.074 0.926 7 C -0.137 4.137 8 N -0.525 5.525 9 Si 0.719 3.281 10 H -0.208 1.208 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.310 5.310 14 C 0.010 3.990 15 H 0.104 0.896 16 C -0.135 4.135 17 C -0.118 4.118 18 C -0.201 4.201 19 C -0.204 4.204 20 C -0.087 4.087 21 C -0.125 4.125 22 C -0.137 4.137 23 C -0.152 4.152 24 C -0.142 4.142 25 C -0.134 4.134 26 H 0.066 0.934 27 H 0.046 0.954 28 H 0.053 0.947 29 H 0.106 0.894 30 H 0.054 0.946 31 H 0.070 0.930 32 H 0.150 0.850 33 H 0.075 0.925 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.066 0.934 42 H 0.138 0.862 43 H 0.133 0.867 44 H 0.131 0.869 45 H 0.132 0.868 46 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -9.107 8.534 -6.107 13.895 hybrid contribution 1.556 0.742 0.833 1.915 sum -7.551 9.276 -5.274 13.072 Atomic orbital electron populations 1.21845 0.99723 0.98762 0.99806 1.21536 0.91439 0.99680 1.01773 1.19085 0.93965 0.90878 0.84842 0.97205 1.21402 0.91524 1.37750 1.05346 0.92606 1.24884 0.97974 0.95168 0.95678 1.69884 1.34781 1.38357 1.09521 0.86619 0.85975 0.77446 0.78102 1.20842 1.21224 1.19908 1.60961 1.08044 1.31338 1.30677 1.20842 0.94684 0.87682 0.95834 0.89601 1.21619 0.94879 1.00098 0.96893 1.21138 0.95394 0.99267 0.95968 1.21816 0.99994 1.01078 0.97227 1.21884 0.98534 0.99862 1.00149 1.20871 0.94728 0.97440 0.95670 1.20920 0.96222 0.95077 1.00256 1.21034 0.99381 0.95773 0.97475 1.20989 0.96038 1.00026 0.98115 1.21031 0.97092 0.96099 0.99947 1.21007 0.99872 0.95382 0.97150 0.93426 0.95405 0.94729 0.89386 0.94562 0.92996 0.84975 0.92545 0.91117 0.91192 0.92872 0.93279 0.92995 0.92642 0.92480 0.93378 0.86244 0.86696 0.86913 0.86843 0.86737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 8.80 37.16 0.33 -2.60 16 2 C -0.11 -2.55 5.45 -26.73 -0.15 -2.69 16 3 C 0.22 5.39 2.00 -68.86 -0.14 5.25 16 4 H 0.01 0.28 7.41 -51.93 -0.38 -0.11 16 5 C -0.52 -14.07 8.60 -34.44 -0.30 -14.37 16 6 H 0.06 1.49 7.40 -52.49 -0.39 1.10 16 7 C 0.06 1.79 5.29 -17.82 -0.09 1.69 16 8 N -0.89 -25.27 11.29 55.43 0.63 -24.64 16 9 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 13 N -0.68 -13.91 5.76 -102.17 -0.59 -14.50 16 14 C 0.12 2.09 1.18 -68.87 -0.08 2.01 16 15 H 0.09 1.58 4.35 -51.93 -0.23 1.36 16 16 C -0.10 -1.41 4.47 -26.73 -0.12 -1.53 16 17 C -0.10 -1.24 2.76 -90.62 -0.25 -1.49 16 18 C -0.14 -1.56 9.19 37.16 0.34 -1.22 16 19 C -0.15 -1.79 8.79 37.15 0.33 -1.46 16 20 C -0.09 -1.47 3.91 -104.62 -0.41 -1.88 16 21 C -0.11 -1.81 9.15 -39.58 -0.36 -2.17 16 22 C -0.12 -1.84 10.05 -39.59 -0.40 -2.24 16 23 C -0.13 -1.96 10.05 -39.59 -0.40 -2.36 16 24 C -0.12 -1.84 10.05 -39.58 -0.40 -2.24 16 25 C -0.12 -1.87 8.65 -39.59 -0.34 -2.21 16 26 H 0.05 0.90 6.55 -51.93 -0.34 0.56 16 27 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.09 2.38 5.96 -51.93 -0.31 2.07 16 30 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 32 H 0.33 6.77 5.58 -39.29 -0.22 6.56 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 35 H 0.07 0.93 6.54 -51.93 -0.34 0.59 16 36 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.06 0.75 6.32 -51.93 -0.33 0.42 16 41 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.12 1.98 6.49 -52.48 -0.34 1.64 16 43 H 0.11 1.53 8.06 -52.48 -0.42 1.11 16 44 H 0.11 1.36 8.06 -52.48 -0.42 0.94 16 45 H 0.11 1.41 8.06 -52.48 -0.42 0.98 16 46 H 0.11 1.71 7.66 -52.49 -0.40 1.31 16 LS Contribution 354.46 15.07 5.34 5.34 Total: -1.00 -28.06 354.46 -9.99 -38.05 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: -7.91 Total: 8.92 kcal Atomic # 6 Polarization: -27.07 SS G_CDS: -2.44 Total: -29.50 kcal Atomic # 7 Polarization: -39.18 SS G_CDS: 0.04 Total: -39.14 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -28.06 -9.99 -38.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054182287.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.291 kcal (2) G-P(sol) polarization free energy of solvation -28.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds