Wall clock time and date at job start Mon Mar 30 2020 01:25:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47351 * 2 1 4 4 H 1.08994 * 109.47251 * 303.90354 * 3 2 1 5 5 C 1.50700 * 109.47069 * 183.90181 * 3 2 1 6 6 H 1.07997 * 120.00272 * 240.00038 * 5 3 2 7 7 C 1.37879 * 119.99983 * 59.99944 * 5 3 2 8 8 N 1.31515 * 120.00008 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00029 * 179.97438 * 7 5 3 10 10 H 1.48510 * 109.47079 * 90.00240 * 9 7 5 11 11 H 1.48494 * 109.47224 * 210.00234 * 9 7 5 12 12 H 1.48500 * 109.47395 * 330.00648 * 9 7 5 13 13 N 1.46899 * 109.47227 * 63.90425 * 3 2 1 14 14 C 1.46896 * 111.00088 * 259.23894 * 13 3 2 15 15 H 1.09003 * 109.47022 * 36.49652 * 14 13 3 16 16 C 1.53000 * 109.47093 * 276.49969 * 14 13 3 17 17 C 1.53002 * 109.47197 * 173.53153 * 16 14 13 18 18 C 1.53002 * 109.46841 * 174.09215 * 17 16 14 19 19 C 1.52998 * 109.47098 * 294.09068 * 17 16 14 20 20 C 1.50694 * 109.47533 * 156.49798 * 14 13 3 21 21 C 1.38238 * 119.99752 * 39.72715 * 20 14 13 22 22 C 1.38235 * 119.99890 * 179.80875 * 21 20 14 23 23 C 1.38232 * 120.00169 * 0.40078 * 22 21 20 24 24 C 1.38233 * 119.99991 * 359.85399 * 23 22 21 25 25 C 1.38230 * 120.00414 * 219.99926 * 20 14 13 26 26 H 1.08997 * 109.46913 * 293.57463 * 1 2 3 27 27 H 1.09006 * 109.46638 * 53.56602 * 1 2 3 28 28 H 1.08994 * 109.47511 * 173.56757 * 1 2 3 29 29 H 1.09007 * 109.47124 * 240.00082 * 2 1 3 30 30 H 1.09003 * 109.46873 * 120.00130 * 2 1 3 31 31 H 0.97003 * 119.99823 * 179.97438 * 8 7 5 32 32 H 1.00903 * 110.99923 * 23.19104 * 13 3 2 33 33 H 1.09004 * 109.47078 * 293.53506 * 16 14 13 34 34 H 1.09005 * 109.46827 * 53.53696 * 16 14 13 35 35 H 1.08996 * 109.46954 * 54.09248 * 17 16 14 36 36 H 1.08996 * 109.47319 * 60.00257 * 18 17 16 37 37 H 1.09000 * 109.46597 * 180.02562 * 18 17 16 38 38 H 1.08999 * 109.47163 * 300.00024 * 18 17 16 39 39 H 1.08991 * 109.47506 * 305.54403 * 19 17 16 40 40 H 1.08997 * 109.47204 * 65.54611 * 19 17 16 41 41 H 1.09004 * 109.46935 * 185.54342 * 19 17 16 42 42 H 1.08007 * 120.00123 * 359.97438 * 21 20 14 43 43 H 1.08002 * 119.99942 * 180.22651 * 22 21 20 44 44 H 1.08000 * 119.99770 * 179.83323 * 23 22 21 45 45 H 1.07994 * 120.00038 * 179.97438 * 24 23 22 46 46 H 1.07996 * 120.00059 * 359.97438 * 25 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6208 1.9761 -0.8529 5 6 3.5439 1.4435 -0.0967 6 1 4.1352 1.8930 0.6874 7 6 4.1651 0.8705 -1.1861 8 7 3.4451 0.3236 -2.1412 9 14 6.0292 0.8724 -1.3063 10 1 6.5677 -0.3551 -0.6670 11 1 6.4331 0.9044 -2.7349 12 1 6.5688 2.0693 -0.6124 13 7 1.6289 2.1072 1.2438 14 6 0.4567 2.9639 1.0202 15 1 -0.2070 2.4900 0.2970 16 6 0.9125 4.3213 0.4812 17 6 -0.3118 5.1546 0.0967 18 6 0.1346 6.5625 -0.3028 19 6 -1.0291 4.4933 -1.0818 20 6 -0.2771 3.1609 2.3216 21 6 0.4320 3.3437 3.4941 22 6 -0.2411 3.5284 4.6873 23 6 -1.6232 3.5220 4.7093 24 6 -2.3323 3.3340 3.5377 25 6 -1.6592 3.1533 2.3439 26 1 -0.3633 0.4110 0.9419 27 1 -0.3633 0.6104 -0.8269 28 1 -0.3634 -1.0211 -0.1151 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.8822 -0.0792 -2.9078 32 1 1.4500 1.4325 1.9723 33 1 1.4817 4.8448 1.2494 34 1 1.5402 4.1712 -0.3972 35 1 -0.9908 5.2163 0.9471 36 1 0.8136 6.5007 -1.1531 37 1 -0.7377 7.1562 -0.5762 38 1 0.6456 7.0336 0.5369 39 1 -0.3231 4.3421 -1.8984 40 1 -1.4329 3.5308 -0.7678 41 1 -1.8424 5.1359 -1.4191 42 1 1.5120 3.3449 3.4775 43 1 0.3129 3.6748 5.6028 44 1 -2.1491 3.6636 5.6420 45 1 -3.4121 3.3286 3.5550 46 1 -2.2132 3.0065 1.4285 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054182290.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:19 Heat of formation + Delta-G solvation = -1.904621 kcal Electronic energy + Delta-G solvation = -22385.196736 eV Core-core repulsion = 19466.473471 eV Total energy + Delta-G solvation = -2918.723265 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.49021 -37.04803 -35.43463 -32.86961 -31.44756 -30.69324 -29.67939 -27.67332 -26.90118 -26.14016 -23.36448 -22.53074 -22.16223 -20.56579 -19.72536 -18.99762 -16.78825 -16.07355 -15.34407 -14.99818 -14.85380 -14.53041 -14.14613 -13.69994 -13.44516 -13.28147 -13.09113 -12.96625 -12.70309 -12.21599 -12.11688 -11.91492 -11.77398 -11.44147 -11.27745 -11.18964 -10.91528 -10.79717 -10.72247 -10.56763 -10.43176 -10.23429 -10.09712 -9.95442 -9.73324 -9.62247 -9.01763 -8.67621 -8.40634 -8.29464 -7.14243 -5.93917 -3.96458 1.59722 1.64107 3.34682 3.41339 3.45812 4.03556 4.47361 4.96252 5.05050 5.15586 5.18824 5.26729 5.31398 5.35688 5.39732 5.57336 5.76731 5.80636 5.86460 5.90083 6.05245 6.06964 6.13278 6.15931 6.16042 6.16843 6.23440 6.32420 6.41045 6.43033 6.46894 6.54666 6.66255 6.73225 6.77281 6.81773 6.92482 6.97651 7.03153 7.25235 7.26319 7.45693 7.79098 7.95528 8.35261 8.61833 8.65555 9.11492 9.68441 11.12116 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.016625 B = 0.005604 C = 0.005113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.852495 B = 4995.011343 C = 5475.448719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.147 4.147 3 C 0.220 3.780 4 H 0.031 0.969 5 C -0.488 4.488 6 H 0.062 0.938 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.894 3.106 10 H -0.283 1.283 11 H -0.289 1.289 12 H -0.275 1.275 13 N -0.677 5.677 14 C 0.123 3.877 15 H 0.050 0.950 16 C -0.094 4.094 17 C -0.099 4.099 18 C -0.144 4.144 19 C -0.147 4.147 20 C -0.069 4.069 21 C -0.100 4.100 22 C -0.125 4.125 23 C -0.133 4.133 24 C -0.126 4.126 25 C -0.118 4.118 26 H 0.034 0.966 27 H 0.042 0.958 28 H 0.034 0.966 29 H 0.099 0.901 30 H 0.035 0.965 31 H 0.258 0.742 32 H 0.325 0.675 33 H 0.061 0.939 34 H 0.074 0.926 35 H 0.066 0.934 36 H 0.054 0.946 37 H 0.047 0.953 38 H 0.051 0.949 39 H 0.057 0.943 40 H 0.053 0.947 41 H 0.046 0.954 42 H 0.132 0.868 43 H 0.116 0.884 44 H 0.113 0.887 45 H 0.114 0.886 46 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.665 7.156 7.802 15.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.187 4.187 3 C 0.112 3.888 4 H 0.049 0.951 5 C -0.527 4.527 6 H 0.080 0.920 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.722 3.278 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.200 1.200 13 N -0.307 5.307 14 C 0.013 3.987 15 H 0.068 0.932 16 C -0.133 4.133 17 C -0.118 4.118 18 C -0.201 4.201 19 C -0.204 4.204 20 C -0.070 4.070 21 C -0.119 4.119 22 C -0.143 4.143 23 C -0.151 4.151 24 C -0.144 4.144 25 C -0.136 4.136 26 H 0.053 0.947 27 H 0.062 0.938 28 H 0.053 0.947 29 H 0.117 0.883 30 H 0.053 0.947 31 H 0.068 0.932 32 H 0.142 0.858 33 H 0.080 0.920 34 H 0.092 0.908 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.065 0.935 42 H 0.150 0.850 43 H 0.134 0.866 44 H 0.131 0.869 45 H 0.133 0.867 46 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -10.167 7.582 7.540 14.755 hybrid contribution 0.215 -0.822 -0.226 0.879 sum -9.952 6.760 7.313 14.079 Atomic orbital electron populations 1.21907 0.99613 0.99478 0.99551 1.22232 0.91397 1.02115 1.02938 1.19215 0.95130 0.88444 0.85981 0.95135 1.21228 0.91116 1.35259 1.05107 0.91978 1.24947 0.98030 0.95747 0.95859 1.69872 1.34736 1.39323 1.09894 0.86568 0.86015 0.78305 0.76901 1.20944 1.21513 1.19959 1.60879 1.32399 1.26171 1.11231 1.20603 0.91428 0.95173 0.91491 0.93215 1.21596 0.96245 0.93926 1.01485 1.21156 0.97717 0.94902 0.97977 1.21806 1.00671 0.96304 1.01318 1.21881 0.99980 1.00115 0.98432 1.20219 0.93285 0.97610 0.95844 1.21181 1.00907 0.98155 0.91614 1.21150 0.94342 1.00807 0.98011 1.21039 0.94429 1.01793 0.97809 1.21029 0.99343 1.01182 0.92873 1.21059 0.94056 1.00773 0.97744 0.94738 0.93848 0.94722 0.88280 0.94668 0.93188 0.85786 0.92024 0.90762 0.91551 0.92674 0.93410 0.93024 0.92424 0.92825 0.93517 0.84970 0.86572 0.86852 0.86748 0.86622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.88 8.57 37.16 0.32 -2.57 16 2 C -0.15 -3.41 5.08 -26.73 -0.14 -3.55 16 3 C 0.22 5.27 1.92 -68.87 -0.13 5.13 16 4 H 0.03 0.81 7.08 -51.93 -0.37 0.44 16 5 C -0.49 -13.18 8.84 -34.44 -0.30 -13.49 16 6 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 7 C 0.05 1.48 5.30 -17.82 -0.09 1.39 16 8 N -0.90 -25.28 11.30 55.43 0.63 -24.66 16 9 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 13 N -0.68 -13.71 5.23 -102.18 -0.53 -14.24 16 14 C 0.12 2.13 1.26 -68.87 -0.09 2.05 16 15 H 0.05 0.91 4.24 -51.93 -0.22 0.69 16 16 C -0.09 -1.60 4.33 -26.73 -0.12 -1.72 16 17 C -0.10 -1.39 2.78 -90.62 -0.25 -1.65 16 18 C -0.14 -1.84 9.19 37.16 0.34 -1.49 16 19 C -0.15 -2.04 8.84 37.16 0.33 -1.71 16 20 C -0.07 -1.06 4.04 -104.63 -0.42 -1.48 16 21 C -0.10 -1.49 9.03 -39.58 -0.36 -1.85 16 22 C -0.13 -1.61 10.05 -39.58 -0.40 -2.01 16 23 C -0.13 -1.59 10.05 -39.59 -0.40 -1.99 16 24 C -0.13 -1.56 10.05 -39.58 -0.40 -1.96 16 25 C -0.12 -1.63 8.61 -39.58 -0.34 -1.97 16 26 H 0.03 0.62 6.96 -51.93 -0.36 0.26 16 27 H 0.04 0.85 7.80 -51.93 -0.40 0.44 16 28 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.10 2.60 5.98 -51.93 -0.31 2.29 16 30 H 0.03 0.81 8.06 -51.93 -0.42 0.39 16 31 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 32 H 0.32 6.46 7.27 -39.29 -0.29 6.17 16 33 H 0.06 1.06 8.13 -51.93 -0.42 0.64 16 34 H 0.07 1.46 7.53 -51.93 -0.39 1.07 16 35 H 0.07 0.93 6.47 -51.93 -0.34 0.59 16 36 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.05 0.75 6.68 -51.93 -0.35 0.41 16 41 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.13 2.05 7.71 -52.48 -0.40 1.65 16 43 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 44 H 0.11 1.09 8.06 -52.49 -0.42 0.67 16 45 H 0.11 1.15 8.06 -52.49 -0.42 0.73 16 46 H 0.12 1.51 8.00 -52.49 -0.42 1.09 16 LS Contribution 356.36 15.07 5.37 5.37 Total: -1.00 -27.23 356.36 -10.05 -37.27 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: -8.04 Total: 8.72 kcal Atomic # 6 Polarization: -26.41 SS G_CDS: -2.45 Total: -28.85 kcal Atomic # 7 Polarization: -38.99 SS G_CDS: 0.09 Total: -38.90 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -27.23 -10.05 -37.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054182290.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.370 kcal (2) G-P(sol) polarization free energy of solvation -27.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds