Wall clock time and date at job start Mon Mar 30 2020 01:24:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46719 * 2 1 4 4 H 1.09002 * 109.46787 * 185.53466 * 3 2 1 5 5 C 1.50704 * 109.47216 * 305.52692 * 3 2 1 6 6 H 1.07999 * 119.99963 * 116.29678 * 5 3 2 7 7 C 1.37877 * 120.00103 * 296.30612 * 5 3 2 8 8 N 1.31517 * 120.00096 * 352.11825 * 7 5 3 9 9 Si 1.86795 * 120.00170 * 172.12589 * 7 5 3 10 10 H 1.48502 * 109.47155 * 179.97438 * 9 7 5 11 11 H 1.48507 * 109.46979 * 299.99404 * 9 7 5 12 12 H 1.48494 * 109.47300 * 59.99497 * 9 7 5 13 13 N 1.46901 * 109.47499 * 65.52919 * 3 2 1 14 14 C 1.46895 * 110.99652 * 85.97796 * 13 3 2 15 15 H 1.09000 * 109.47535 * 324.47699 * 14 13 3 16 16 C 1.53000 * 109.47198 * 84.47829 * 14 13 3 17 17 C 1.50704 * 109.46706 * 204.47594 * 14 13 3 18 18 C 1.38236 * 119.99960 * 315.90452 * 17 14 13 19 19 C 1.50699 * 120.00082 * 0.02562 * 18 17 14 20 20 C 1.38240 * 119.99757 * 179.80750 * 18 17 14 21 21 C 1.38238 * 119.99772 * 0.42664 * 20 18 17 22 22 C 1.50701 * 119.99671 * 179.78515 * 21 20 18 23 23 C 1.38239 * 120.00208 * 359.80925 * 21 20 18 24 24 C 1.38234 * 119.99911 * 0.02562 * 23 21 20 25 25 C 1.50701 * 119.99915 * 179.97438 * 24 23 21 26 26 H 1.09000 * 109.46926 * 182.71889 * 1 2 3 27 27 H 1.08999 * 109.47166 * 302.71464 * 1 2 3 28 28 H 1.08999 * 109.47397 * 62.72006 * 1 2 3 29 29 H 1.08993 * 109.47508 * 239.99752 * 2 1 3 30 30 H 1.08998 * 109.47081 * 119.99419 * 2 1 3 31 31 H 0.97005 * 119.99740 * 356.22282 * 8 7 5 32 32 H 1.00893 * 110.99894 * 322.02331 * 13 3 2 33 33 H 1.08999 * 109.47236 * 306.62257 * 16 14 13 34 34 H 1.09005 * 109.47031 * 66.62750 * 16 14 13 35 35 H 1.08999 * 109.46951 * 186.62214 * 16 14 13 36 36 H 1.09001 * 109.46641 * 92.84259 * 19 18 17 37 37 H 1.09000 * 109.46940 * 212.83871 * 19 18 17 38 38 H 1.08997 * 109.47130 * 332.84305 * 19 18 17 39 39 H 1.07995 * 119.99994 * 180.20715 * 20 18 17 40 40 H 1.08997 * 109.47464 * 270.01924 * 22 21 20 41 41 H 1.09000 * 109.47124 * 30.02666 * 22 21 20 42 42 H 1.09003 * 109.46849 * 150.01903 * 22 21 20 43 43 H 1.07997 * 119.99858 * 179.97438 * 23 21 20 44 44 H 1.09001 * 109.47028 * 263.97871 * 25 24 23 45 45 H 1.08997 * 109.46636 * 23.98241 * 25 24 23 46 46 H 1.09001 * 109.46958 * 143.98376 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1254 1.4441 -0.0991 5 6 1.4289 2.1913 -1.1563 6 1 0.7724 3.0287 -0.9710 7 6 1.7078 1.8074 -2.4509 8 7 2.6234 0.8922 -2.6825 9 14 0.7853 2.5872 -3.8757 10 1 1.2676 2.0065 -5.1546 11 1 -0.6685 2.3223 -3.7284 12 1 1.0238 4.0528 -3.8770 13 7 1.6622 2.0955 1.2606 14 6 2.6581 1.8334 2.3081 15 1 3.0518 0.8238 2.1908 16 6 3.8012 2.8435 2.1893 17 6 2.0096 1.9656 3.6620 18 6 1.1601 3.0249 3.9210 19 6 0.8820 4.0472 2.8493 20 6 0.5621 3.1439 5.1617 21 6 0.8206 2.2085 6.1461 22 6 0.1725 2.3410 7.5002 23 6 1.6740 1.1519 5.8887 24 6 2.2693 1.0310 4.6469 25 6 3.2001 -0.1206 4.3664 26 1 -0.3633 -1.0265 0.0487 27 1 -0.3633 0.5554 0.8646 28 1 -0.3634 0.4710 -0.9133 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8900 31 1 3.1409 0.5269 -1.9478 32 1 0.7419 1.8062 1.5560 33 1 4.1935 2.8303 1.1724 34 1 3.4299 3.8414 2.4227 35 1 4.5944 2.5783 2.8882 36 1 -0.0124 3.7597 2.2964 37 1 0.7266 5.0230 3.3095 38 1 1.7303 4.0982 2.1668 39 1 -0.1042 3.9696 5.3630 40 1 0.8118 2.9360 8.1524 41 1 -0.7949 2.8316 7.3935 42 1 0.0319 1.3510 7.9340 43 1 1.8763 0.4214 6.6579 44 1 4.2305 0.1986 4.5232 45 1 2.9691 -0.9465 5.0392 46 1 3.0738 -0.4466 3.3340 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054182992.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:21 Heat of formation + Delta-G solvation = 3.491039 kcal Electronic energy + Delta-G solvation = -22439.757150 eV Core-core repulsion = 19521.267859 eV Total energy + Delta-G solvation = -2918.489291 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.97792 -37.05507 -34.52035 -33.42038 -32.08174 -30.93696 -28.55902 -27.72889 -26.55961 -26.46798 -25.33569 -23.52785 -21.69514 -20.53234 -19.71453 -19.14282 -16.92685 -16.08870 -15.72031 -14.49695 -14.29774 -14.08194 -13.84808 -13.61109 -13.45358 -13.15742 -13.04624 -12.79662 -12.69676 -12.64087 -12.49905 -12.17259 -11.92523 -11.81043 -11.50656 -11.33194 -11.11660 -10.97251 -10.87697 -10.74946 -10.69066 -10.26663 -10.14761 -10.06197 -9.94762 -9.68174 -8.59512 -8.33316 -8.23780 -8.11974 -7.22884 -6.25916 -3.93866 1.53060 1.59597 3.48261 3.48823 3.67571 3.87842 4.57042 4.86545 4.87922 5.07567 5.08398 5.20499 5.39347 5.40125 5.43400 5.52464 5.59607 5.65995 5.75341 5.80796 5.86687 5.91588 5.95168 6.04617 6.14480 6.15575 6.22068 6.29977 6.31397 6.35371 6.36957 6.48825 6.67439 6.70827 6.72942 6.74890 6.91505 7.01102 7.07378 7.14569 7.28059 7.31293 7.33201 7.99759 8.32698 8.49701 8.70097 8.97464 9.73372 11.09896 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.025265 B = 0.004898 C = 0.004663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.006914 B = 5714.705390 C = 6003.889466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.150 4.150 3 C 0.203 3.797 4 H 0.025 0.975 5 C -0.566 4.566 6 H 0.055 0.945 7 C 0.018 3.982 8 N -0.916 5.916 9 Si 1.062 2.938 10 H -0.285 1.285 11 H -0.290 1.290 12 H -0.289 1.289 13 N -0.664 5.664 14 C 0.117 3.883 15 H 0.047 0.953 16 C -0.134 4.134 17 C -0.087 4.087 18 C -0.052 4.052 19 C -0.118 4.118 20 C -0.134 4.134 21 C -0.090 4.090 22 C -0.110 4.110 23 C -0.134 4.134 24 C -0.076 4.076 25 C -0.117 4.117 26 H 0.024 0.976 27 H 0.034 0.966 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.017 0.983 31 H 0.268 0.732 32 H 0.330 0.670 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.042 0.958 36 H 0.072 0.928 37 H 0.044 0.956 38 H 0.103 0.897 39 H 0.116 0.884 40 H 0.065 0.935 41 H 0.063 0.937 42 H 0.062 0.938 43 H 0.114 0.886 44 H 0.068 0.932 45 H 0.061 0.939 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.926 1.279 16.475 16.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.190 4.190 3 C 0.094 3.906 4 H 0.043 0.957 5 C -0.605 4.605 6 H 0.073 0.927 7 C -0.185 4.185 8 N -0.554 5.554 9 Si 0.892 3.108 10 H -0.211 1.211 11 H -0.216 1.216 12 H -0.216 1.216 13 N -0.296 5.296 14 C 0.007 3.993 15 H 0.064 0.936 16 C -0.192 4.192 17 C -0.088 4.088 18 C -0.052 4.052 19 C -0.174 4.174 20 C -0.152 4.152 21 C -0.090 4.090 22 C -0.167 4.167 23 C -0.152 4.152 24 C -0.076 4.076 25 C -0.173 4.173 26 H 0.043 0.957 27 H 0.053 0.947 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.036 0.964 31 H 0.079 0.921 32 H 0.149 0.851 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.061 0.939 36 H 0.090 0.910 37 H 0.063 0.937 38 H 0.122 0.878 39 H 0.134 0.866 40 H 0.084 0.916 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.133 0.867 44 H 0.087 0.913 45 H 0.080 0.920 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.825 1.854 14.630 14.859 hybrid contribution -0.051 -1.023 1.998 2.245 sum -1.876 0.831 16.627 16.753 Atomic orbital electron populations 1.21533 0.96803 0.98206 1.01847 1.22205 0.96143 1.01420 0.99211 1.19376 0.95494 0.88387 0.87322 0.95712 1.21798 1.31019 1.16728 0.90974 0.92708 1.25650 0.96988 0.96181 0.99687 1.70808 1.20948 1.27766 1.35846 0.83634 0.75611 0.75613 0.75987 1.21102 1.21630 1.21598 1.61164 1.03567 1.62074 1.02771 1.20484 0.93666 0.97623 0.87537 0.93577 1.21826 0.96491 0.99311 1.01562 1.19876 0.98328 0.94774 0.95793 1.19874 0.94963 0.95575 0.94800 1.21074 1.05023 0.94553 0.96755 1.20884 1.01552 0.99547 0.93211 1.19789 0.97923 0.95395 0.95859 1.20737 1.00061 1.02084 0.93777 1.20744 0.99226 0.98804 0.96418 1.19732 0.98006 0.96365 0.93530 1.20850 0.98244 0.95669 1.02572 0.95685 0.94684 0.91232 0.91508 0.96389 0.92110 0.85059 0.91846 0.92112 0.93881 0.90966 0.93673 0.87849 0.86594 0.91588 0.91821 0.91942 0.86748 0.91310 0.92030 0.91013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.67 9.39 37.16 0.35 -2.32 16 2 C -0.15 -3.39 5.45 -26.73 -0.15 -3.54 16 3 C 0.20 4.79 1.74 -68.86 -0.12 4.67 16 4 H 0.03 0.65 6.45 -51.93 -0.34 0.32 16 5 C -0.57 -15.03 7.31 -34.44 -0.25 -15.28 16 6 H 0.05 1.49 7.83 -52.49 -0.41 1.08 16 7 C 0.02 0.50 5.24 -17.82 -0.09 0.41 16 8 N -0.92 -26.64 12.93 55.43 0.72 -25.93 16 9 Si 1.06 24.85 29.91 -169.99 -5.08 19.76 16 10 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 13 N -0.66 -13.38 3.55 -102.17 -0.36 -13.74 16 14 C 0.12 2.07 2.15 -68.87 -0.15 1.92 16 15 H 0.05 0.85 4.66 -51.93 -0.24 0.61 16 16 C -0.13 -2.29 9.07 37.16 0.34 -1.95 16 17 C -0.09 -1.41 4.67 -104.62 -0.49 -1.90 16 18 C -0.05 -0.81 5.60 -104.62 -0.59 -1.39 16 19 C -0.12 -1.83 8.17 36.01 0.29 -1.54 16 20 C -0.13 -1.86 9.37 -39.58 -0.37 -2.23 16 21 C -0.09 -1.15 5.88 -104.62 -0.62 -1.77 16 22 C -0.11 -1.05 10.01 36.01 0.36 -0.69 16 23 C -0.13 -1.78 9.33 -39.58 -0.37 -2.15 16 24 C -0.08 -1.11 5.88 -104.62 -0.62 -1.73 16 25 C -0.12 -1.51 9.40 36.01 0.34 -1.17 16 26 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.03 0.69 6.36 -51.93 -0.33 0.36 16 28 H 0.07 1.61 7.17 -51.93 -0.37 1.23 16 29 H 0.07 1.67 6.31 -51.93 -0.33 1.35 16 30 H 0.02 0.37 7.44 -51.93 -0.39 -0.02 16 31 H 0.27 7.75 6.03 -40.82 -0.25 7.51 16 32 H 0.33 6.66 5.35 -39.30 -0.21 6.45 16 33 H 0.06 1.20 7.34 -51.93 -0.38 0.82 16 34 H 0.06 1.01 6.07 -51.93 -0.32 0.69 16 35 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.07 1.17 7.76 -51.93 -0.40 0.77 16 37 H 0.04 0.61 8.11 -51.93 -0.42 0.19 16 38 H 0.10 1.80 4.17 -51.93 -0.22 1.58 16 39 H 0.12 1.40 8.06 -52.49 -0.42 0.97 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 42 H 0.06 0.53 8.09 -51.93 -0.42 0.11 16 43 H 0.11 1.28 8.06 -52.49 -0.42 0.86 16 44 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 45 H 0.06 0.68 8.04 -51.93 -0.42 0.26 16 46 H 0.07 1.01 6.21 -51.93 -0.32 0.69 16 LS Contribution 346.52 15.07 5.22 5.22 Total: -1.00 -28.06 346.52 -9.14 -37.20 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: -7.51 Total: 8.14 kcal Atomic # 6 Polarization: -28.53 SS G_CDS: -2.13 Total: -30.66 kcal Atomic # 7 Polarization: -40.02 SS G_CDS: 0.35 Total: -39.67 kcal Atomic # 14 Polarization: 24.85 SS G_CDS: -5.08 Total: 19.76 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -28.06 -9.14 -37.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054182992.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.690 kcal (2) G-P(sol) polarization free energy of solvation -28.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds