Wall clock time and date at job start Mon Mar 30 2020 01:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46719 * 2 1 4 4 H 1.09002 * 109.46787 * 185.53466 * 3 2 1 5 5 C 1.50704 * 109.47216 * 305.52692 * 3 2 1 6 6 H 1.07999 * 119.99963 * 116.29678 * 5 3 2 7 7 C 1.37877 * 120.00103 * 296.30612 * 5 3 2 8 8 N 1.31517 * 120.00096 * 352.11825 * 7 5 3 9 9 Si 1.86795 * 120.00170 * 172.12589 * 7 5 3 10 10 H 1.48502 * 109.47155 * 179.97438 * 9 7 5 11 11 H 1.48507 * 109.46979 * 299.99404 * 9 7 5 12 12 H 1.48494 * 109.47300 * 59.99497 * 9 7 5 13 13 N 1.46901 * 109.47499 * 65.52919 * 3 2 1 14 14 C 1.46895 * 110.99652 * 85.97796 * 13 3 2 15 15 H 1.09000 * 109.47535 * 324.47699 * 14 13 3 16 16 C 1.53000 * 109.47198 * 84.47829 * 14 13 3 17 17 C 1.50704 * 109.46706 * 204.47594 * 14 13 3 18 18 C 1.38236 * 119.99960 * 315.90452 * 17 14 13 19 19 C 1.50699 * 120.00082 * 0.02562 * 18 17 14 20 20 C 1.38240 * 119.99757 * 179.80750 * 18 17 14 21 21 C 1.38238 * 119.99772 * 0.42664 * 20 18 17 22 22 C 1.50701 * 119.99671 * 179.78515 * 21 20 18 23 23 C 1.38239 * 120.00208 * 359.80925 * 21 20 18 24 24 C 1.38234 * 119.99911 * 0.02562 * 23 21 20 25 25 C 1.50701 * 119.99915 * 179.97438 * 24 23 21 26 26 H 1.09000 * 109.46926 * 182.71889 * 1 2 3 27 27 H 1.08999 * 109.47166 * 302.71464 * 1 2 3 28 28 H 1.08999 * 109.47397 * 62.72006 * 1 2 3 29 29 H 1.08993 * 109.47508 * 239.99752 * 2 1 3 30 30 H 1.08998 * 109.47081 * 119.99419 * 2 1 3 31 31 H 0.97005 * 119.99740 * 356.22282 * 8 7 5 32 32 H 1.00893 * 110.99894 * 322.02331 * 13 3 2 33 33 H 1.08999 * 109.47236 * 306.62257 * 16 14 13 34 34 H 1.09005 * 109.47031 * 66.62750 * 16 14 13 35 35 H 1.08999 * 109.46951 * 186.62214 * 16 14 13 36 36 H 1.09001 * 109.46641 * 92.84259 * 19 18 17 37 37 H 1.09000 * 109.46940 * 212.83871 * 19 18 17 38 38 H 1.08997 * 109.47130 * 332.84305 * 19 18 17 39 39 H 1.07995 * 119.99994 * 180.20715 * 20 18 17 40 40 H 1.08997 * 109.47464 * 270.01924 * 22 21 20 41 41 H 1.09000 * 109.47124 * 30.02666 * 22 21 20 42 42 H 1.09003 * 109.46849 * 150.01903 * 22 21 20 43 43 H 1.07997 * 119.99858 * 179.97438 * 23 21 20 44 44 H 1.09001 * 109.47028 * 263.97871 * 25 24 23 45 45 H 1.08997 * 109.46636 * 23.98241 * 25 24 23 46 46 H 1.09001 * 109.46958 * 143.98376 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1254 1.4441 -0.0991 5 6 1.4289 2.1913 -1.1563 6 1 0.7724 3.0287 -0.9710 7 6 1.7078 1.8074 -2.4509 8 7 2.6234 0.8922 -2.6825 9 14 0.7853 2.5872 -3.8757 10 1 1.2676 2.0065 -5.1546 11 1 -0.6685 2.3223 -3.7284 12 1 1.0238 4.0528 -3.8770 13 7 1.6622 2.0955 1.2606 14 6 2.6581 1.8334 2.3081 15 1 3.0518 0.8238 2.1908 16 6 3.8012 2.8435 2.1893 17 6 2.0096 1.9656 3.6620 18 6 1.1601 3.0249 3.9210 19 6 0.8820 4.0472 2.8493 20 6 0.5621 3.1439 5.1617 21 6 0.8206 2.2085 6.1461 22 6 0.1725 2.3410 7.5002 23 6 1.6740 1.1519 5.8887 24 6 2.2693 1.0310 4.6469 25 6 3.2001 -0.1206 4.3664 26 1 -0.3633 -1.0265 0.0487 27 1 -0.3633 0.5554 0.8646 28 1 -0.3634 0.4710 -0.9133 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8900 31 1 3.1409 0.5269 -1.9478 32 1 0.7419 1.8062 1.5560 33 1 4.1935 2.8303 1.1724 34 1 3.4299 3.8414 2.4227 35 1 4.5944 2.5783 2.8882 36 1 -0.0124 3.7597 2.2964 37 1 0.7266 5.0230 3.3095 38 1 1.7303 4.0982 2.1668 39 1 -0.1042 3.9696 5.3630 40 1 0.8118 2.9360 8.1524 41 1 -0.7949 2.8316 7.3935 42 1 0.0319 1.3510 7.9340 43 1 1.8763 0.4214 6.6579 44 1 4.2305 0.1986 4.5232 45 1 2.9691 -0.9465 5.0392 46 1 3.0738 -0.4466 3.3340 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054182992.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:20 Heat of formation + Delta-G solvation = -9.178531 kcal Electronic energy + Delta-G solvation = -22440.306544 eV Core-core repulsion = 19521.267859 eV Total energy + Delta-G solvation = -2919.038685 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.15158 -38.65532 -36.02945 -34.52081 -33.71465 -32.52977 -30.14630 -28.75332 -27.80790 -27.63711 -27.05356 -25.44173 -23.07334 -21.64743 -21.24537 -20.60319 -18.79381 -17.45185 -17.12474 -15.76610 -15.73173 -15.53134 -15.37438 -15.12063 -14.92689 -14.50630 -14.32199 -14.10125 -13.95313 -13.77758 -13.60841 -13.46845 -13.33664 -13.13428 -12.97890 -12.76726 -12.60127 -12.54128 -12.32394 -12.06009 -11.98245 -11.93403 -11.90293 -11.71792 -11.66627 -11.23471 -10.58300 -10.31700 -9.41037 -9.26668 -8.91222 -8.45004 -6.13434 0.44063 0.50987 1.56914 1.63369 1.81952 2.62790 2.79515 3.30335 3.52542 3.78550 3.92043 4.04130 4.04908 4.22369 4.33736 4.35232 4.42889 4.51427 4.55768 4.57779 4.62519 4.72414 4.74445 4.79772 4.82874 4.85998 4.87910 4.96989 5.01137 5.06748 5.09954 5.17033 5.21459 5.24144 5.27884 5.37179 5.42821 5.52445 5.60538 5.70634 5.72065 5.87468 6.09014 6.20571 6.27678 6.62604 6.80024 6.86587 7.61174 8.90441 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.025265 B = 0.004898 C = 0.004663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.006914 B = 5714.705390 C = 6003.889466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.142 4.142 3 C 0.209 3.791 4 H -0.006 1.006 5 C -0.567 4.567 6 H 0.045 0.955 7 C -0.027 4.027 8 N -0.941 5.941 9 Si 1.104 2.896 10 H -0.290 1.290 11 H -0.273 1.273 12 H -0.277 1.277 13 N -0.660 5.660 14 C 0.122 3.878 15 H 0.037 0.963 16 C -0.128 4.128 17 C -0.108 4.108 18 C -0.065 4.065 19 C -0.111 4.111 20 C -0.140 4.140 21 C -0.086 4.086 22 C -0.108 4.108 23 C -0.137 4.137 24 C -0.085 4.085 25 C -0.115 4.115 26 H 0.047 0.953 27 H 0.047 0.953 28 H 0.046 0.954 29 H 0.038 0.962 30 H 0.032 0.968 31 H 0.256 0.744 32 H 0.331 0.669 33 H 0.035 0.965 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.063 0.937 38 H 0.080 0.920 39 H 0.134 0.866 40 H 0.079 0.921 41 H 0.072 0.928 42 H 0.075 0.925 43 H 0.139 0.861 44 H 0.076 0.924 45 H 0.082 0.918 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.234 1.453 19.027 19.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.182 4.182 3 C 0.100 3.900 4 H 0.012 0.988 5 C -0.606 4.606 6 H 0.064 0.936 7 C -0.225 4.225 8 N -0.580 5.580 9 Si 0.928 3.072 10 H -0.216 1.216 11 H -0.199 1.199 12 H -0.203 1.203 13 N -0.291 5.291 14 C 0.012 3.988 15 H 0.055 0.945 16 C -0.186 4.186 17 C -0.109 4.109 18 C -0.066 4.066 19 C -0.168 4.168 20 C -0.158 4.158 21 C -0.086 4.086 22 C -0.165 4.165 23 C -0.155 4.155 24 C -0.085 4.085 25 C -0.171 4.171 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.056 0.944 30 H 0.051 0.949 31 H 0.066 0.934 32 H 0.150 0.850 33 H 0.054 0.946 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.099 0.901 39 H 0.152 0.848 40 H 0.098 0.902 41 H 0.091 0.909 42 H 0.094 0.906 43 H 0.157 0.843 44 H 0.095 0.905 45 H 0.101 0.899 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.137 2.036 17.210 17.611 hybrid contribution 0.376 -1.063 1.336 1.749 sum -2.762 0.973 18.546 18.776 Atomic orbital electron populations 1.21428 0.95266 0.99622 1.01195 1.22064 0.97389 1.00289 0.98438 1.19118 0.93335 0.89115 0.88404 0.98829 1.22037 1.30203 1.16309 0.92050 0.93640 1.26852 0.97095 0.96119 1.02451 1.70914 1.22296 1.29381 1.35404 0.83080 0.75433 0.75489 0.73172 1.21624 1.19880 1.20255 1.61063 1.04152 1.61529 1.02362 1.20416 0.93174 0.97093 0.88107 0.94526 1.21762 0.96933 0.99559 1.00302 1.19734 0.99799 0.96258 0.95099 1.19926 0.95614 0.95457 0.95582 1.20942 1.03411 0.95848 0.96582 1.21118 1.01587 1.00459 0.92659 1.20216 0.96989 0.94383 0.97044 1.20801 1.00446 1.03331 0.91911 1.21069 0.98684 0.99440 0.96290 1.19959 0.98347 0.96333 0.93874 1.20854 0.98480 0.95900 1.01914 0.93437 0.93366 0.93517 0.94358 0.94944 0.93362 0.84992 0.94618 0.91826 0.91915 0.92104 0.91799 0.90142 0.84846 0.90245 0.90871 0.90613 0.84283 0.90505 0.89896 0.92872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.92 9.39 71.98 0.68 -4.24 16 2 C -0.14 -6.56 5.45 30.59 0.17 -6.39 16 3 C 0.21 10.26 1.74 44.17 0.08 10.34 16 4 H -0.01 -0.34 6.45 -2.39 -0.02 -0.35 16 5 C -0.57 -30.87 7.31 25.60 0.19 -30.69 16 6 H 0.05 2.52 7.83 -2.91 -0.02 2.49 16 7 C -0.03 -1.53 5.24 84.65 0.44 -1.09 16 8 N -0.94 -56.46 12.93 21.45 0.28 -56.18 16 9 Si 1.10 50.49 29.91 68.60 2.05 52.54 16 10 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 11 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 12 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 13 N -0.66 -27.21 3.55 -477.15 -1.69 -28.90 16 14 C 0.12 4.38 2.15 44.17 0.10 4.48 16 15 H 0.04 1.40 4.66 -2.39 -0.01 1.38 16 16 C -0.13 -4.49 9.07 71.98 0.65 -3.83 16 17 C -0.11 -3.42 4.67 -19.86 -0.09 -3.52 16 18 C -0.07 -1.96 5.60 -19.86 -0.11 -2.07 16 19 C -0.11 -3.42 8.17 71.24 0.58 -2.84 16 20 C -0.14 -3.54 9.37 22.27 0.21 -3.33 16 21 C -0.09 -1.93 5.88 -19.86 -0.12 -2.05 16 22 C -0.11 -1.63 10.01 71.24 0.71 -0.91 16 23 C -0.14 -3.22 9.33 22.27 0.21 -3.01 16 24 C -0.08 -2.33 5.88 -19.86 -0.12 -2.45 16 25 C -0.12 -2.79 9.40 71.24 0.67 -2.12 16 26 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 27 H 0.05 1.86 6.36 -2.39 -0.02 1.84 16 28 H 0.05 2.15 7.17 -2.39 -0.02 2.13 16 29 H 0.04 1.98 6.31 -2.39 -0.02 1.96 16 30 H 0.03 1.37 7.44 -2.39 -0.02 1.35 16 31 H 0.26 15.56 6.03 -92.70 -0.56 15.00 16 32 H 0.33 13.44 5.35 -89.70 -0.48 12.96 16 33 H 0.03 1.41 7.34 -2.39 -0.02 1.39 16 34 H 0.06 2.16 6.07 -2.38 -0.01 2.15 16 35 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.06 1.97 7.76 -2.39 -0.02 1.95 16 37 H 0.06 1.66 8.11 -2.39 -0.02 1.64 16 38 H 0.08 2.84 4.17 -2.39 -0.01 2.83 16 39 H 0.13 2.82 8.06 -2.91 -0.02 2.80 16 40 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.07 0.98 8.09 -2.39 -0.02 0.96 16 42 H 0.07 0.96 8.09 -2.39 -0.02 0.94 16 43 H 0.14 2.53 8.06 -2.91 -0.02 2.51 16 44 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 45 H 0.08 1.62 8.04 -2.39 -0.02 1.60 16 46 H 0.05 1.48 6.21 -2.39 -0.01 1.47 16 Total: -1.00 -61.53 346.52 5.57 -55.97 By element: Atomic # 1 Polarization: 29.60 SS G_CDS: 0.69 Total: 30.29 kcal Atomic # 6 Polarization: -57.96 SS G_CDS: 4.24 Total: -53.72 kcal Atomic # 7 Polarization: -83.66 SS G_CDS: -1.42 Total: -85.08 kcal Atomic # 14 Polarization: 50.49 SS G_CDS: 2.05 Total: 52.54 kcal Total: -61.53 5.57 -55.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054182992.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.789 kcal (2) G-P(sol) polarization free energy of solvation -61.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds