Wall clock time and date at job start Mon Mar 30 2020 01:24:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46731 * 2 1 4 4 H 1.08999 * 109.47471 * 306.05508 * 3 2 1 5 5 C 1.50704 * 109.46913 * 186.05423 * 3 2 1 6 6 H 1.07996 * 120.00266 * 245.27879 * 5 3 2 7 7 C 1.37881 * 119.99719 * 65.27869 * 5 3 2 8 8 N 1.31515 * 119.99784 * 191.60263 * 7 5 3 9 9 Si 1.86799 * 120.00080 * 11.60371 * 7 5 3 10 10 H 1.48498 * 109.47471 * 88.58812 * 9 7 5 11 11 H 1.48500 * 109.46989 * 208.59001 * 9 7 5 12 12 H 1.48497 * 109.47273 * 328.58648 * 9 7 5 13 13 N 1.46897 * 109.47015 * 66.06174 * 3 2 1 14 14 C 1.46903 * 110.99786 * 208.43601 * 13 3 2 15 15 H 1.08997 * 109.47280 * 29.10748 * 14 13 3 16 16 C 1.52998 * 109.47351 * 149.11079 * 14 13 3 17 17 C 1.50699 * 109.47102 * 269.10922 * 14 13 3 18 18 C 1.38240 * 119.99838 * 315.95066 * 17 14 13 19 19 C 1.50696 * 119.99889 * 0.02562 * 18 17 14 20 20 C 1.38234 * 119.99763 * 179.80678 * 18 17 14 21 21 C 1.38234 * 120.00333 * 0.42182 * 20 18 17 22 22 C 1.50702 * 120.00391 * 179.78670 * 21 20 18 23 23 C 1.38237 * 119.99807 * 359.81267 * 21 20 18 24 24 C 1.38231 * 120.00286 * 136.22438 * 17 14 13 25 25 C 1.50700 * 119.99999 * 359.97438 * 24 17 14 26 26 H 1.09005 * 109.47033 * 173.88017 * 1 2 3 27 27 H 1.09000 * 109.47196 * 53.88168 * 1 2 3 28 28 H 1.08997 * 109.47146 * 293.87732 * 1 2 3 29 29 H 1.08991 * 109.47607 * 120.00109 * 2 1 3 30 30 H 1.09002 * 109.46917 * 240.00501 * 2 1 3 31 31 H 0.97005 * 119.99763 * 179.97438 * 8 7 5 32 32 H 1.00905 * 111.00130 * 332.38166 * 13 3 2 33 33 H 1.09002 * 109.47037 * 66.90976 * 16 14 13 34 34 H 1.08998 * 109.47636 * 186.91321 * 16 14 13 35 35 H 1.09003 * 109.46795 * 306.91466 * 16 14 13 36 36 H 1.08998 * 109.47643 * 93.12391 * 19 18 17 37 37 H 1.09007 * 109.46822 * 213.12061 * 19 18 17 38 38 H 1.08995 * 109.47034 * 333.11609 * 19 18 17 39 39 H 1.08001 * 120.00137 * 180.21232 * 20 18 17 40 40 H 1.08999 * 109.47246 * 270.02249 * 22 21 20 41 41 H 1.09004 * 109.46512 * 30.02199 * 22 21 20 42 42 H 1.09002 * 109.47073 * 150.02076 * 22 21 20 43 43 H 1.07998 * 120.00181 * 179.97438 * 23 21 20 44 44 H 1.09001 * 109.46994 * 84.08923 * 25 24 17 45 45 H 1.08994 * 109.47543 * 204.09162 * 25 24 17 46 46 H 1.09003 * 109.47196 * 324.09642 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5907 1.9867 -0.8308 5 6 3.5395 1.4452 -0.1499 6 1 4.1620 1.8072 0.6550 7 6 4.1167 0.9855 -1.3146 8 7 5.4134 0.7720 -1.3661 9 14 3.0569 0.6660 -2.8193 10 1 2.9486 1.9107 -3.6220 11 1 3.6771 -0.4022 -3.6437 12 1 1.7026 0.2354 -2.3886 13 7 1.6732 2.0915 1.2658 14 6 1.5118 3.5406 1.0871 15 1 1.1901 3.7472 0.0663 16 6 0.4601 4.0616 2.0686 17 6 2.8270 4.2286 1.3481 18 6 3.5960 3.8596 2.4360 19 6 3.1194 2.7690 3.3605 20 6 4.8042 4.4879 2.6732 21 6 5.2394 5.4911 1.8276 22 6 6.5544 6.1793 2.0890 23 6 4.4681 5.8634 0.7425 24 6 3.2617 5.2324 0.5031 25 6 2.4207 5.6385 -0.6797 26 1 -0.3633 -1.0219 -0.1096 27 1 -0.3633 0.6058 -0.8301 28 1 -0.3633 0.4160 0.9397 29 1 1.8934 -0.5138 0.8899 30 1 1.8933 -0.5138 -0.8901 31 1 5.8194 0.4482 -2.1854 32 1 0.8380 1.6799 1.6545 33 1 0.8355 3.9667 3.0875 34 1 0.2509 5.1097 1.8546 35 1 -0.4553 3.4794 1.9630 36 1 3.5314 1.8130 3.0375 37 1 3.4515 2.9831 4.3764 38 1 2.0308 2.7223 3.3364 39 1 5.4067 4.1973 3.5212 40 1 6.3906 7.0432 2.7332 41 1 7.2368 5.4848 2.5790 42 1 6.9868 6.5077 1.1438 43 1 4.8078 6.6475 0.0821 44 1 1.6671 6.3581 -0.3597 45 1 3.0570 6.0923 -1.4393 46 1 1.9294 4.7587 -1.0954 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054182995.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:22 Heat of formation + Delta-G solvation = 0.309998 kcal Electronic energy + Delta-G solvation = -22949.433557 eV Core-core repulsion = 20030.806326 eV Total energy + Delta-G solvation = -2918.627232 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.90204 -38.37119 -35.69338 -34.32547 -34.03527 -32.79446 -30.37256 -28.62986 -28.34713 -27.52214 -27.25234 -24.32266 -22.83020 -21.54858 -21.41172 -20.54888 -18.77301 -17.34722 -16.86033 -16.29351 -16.08473 -15.53403 -15.10382 -15.00775 -14.78355 -14.38622 -14.26177 -13.96076 -13.86019 -13.73721 -13.64164 -13.52292 -13.41639 -13.06678 -12.98907 -12.75235 -12.66868 -12.39342 -12.25707 -12.10715 -12.07391 -11.84441 -11.72611 -11.52795 -11.35123 -11.07369 -10.97028 -10.52418 -9.20933 -8.98248 -8.83968 -8.15290 -6.09816 0.68359 0.74023 1.31611 1.35732 1.42709 2.40631 2.98740 3.18004 3.57534 4.01545 4.05239 4.18782 4.23955 4.38576 4.41781 4.42401 4.47740 4.53114 4.57881 4.62337 4.70794 4.79737 4.84851 4.85744 4.90489 4.93271 4.96980 5.03126 5.11370 5.14017 5.16621 5.19732 5.22680 5.32389 5.38069 5.40926 5.52202 5.58372 5.75526 5.83819 5.85804 5.89667 6.04434 6.28945 6.42895 6.66007 7.00575 7.09367 7.52302 9.01990 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.015157 B = 0.007952 C = 0.006654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.891562 B = 3520.221334 C = 4207.264250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.134 4.134 3 C 0.201 3.799 4 H -0.012 1.012 5 C -0.469 4.469 6 H 0.039 0.961 7 C 0.008 3.992 8 N -0.953 5.953 9 Si 0.910 3.090 10 H -0.287 1.287 11 H -0.297 1.297 12 H -0.217 1.217 13 N -0.666 5.666 14 C 0.123 3.877 15 H 0.044 0.956 16 C -0.146 4.146 17 C -0.067 4.067 18 C -0.057 4.057 19 C -0.085 4.085 20 C -0.156 4.156 21 C -0.103 4.103 22 C -0.104 4.104 23 C -0.149 4.149 24 C -0.098 4.098 25 C -0.107 4.107 26 H 0.061 0.939 27 H 0.044 0.956 28 H 0.070 0.930 29 H 0.056 0.944 30 H 0.044 0.956 31 H 0.256 0.744 32 H 0.337 0.663 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.048 0.952 37 H 0.051 0.949 38 H 0.088 0.912 39 H 0.120 0.880 40 H 0.084 0.916 41 H 0.063 0.937 42 H 0.065 0.935 43 H 0.125 0.875 44 H 0.088 0.912 45 H 0.063 0.937 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.966 8.727 6.708 14.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.172 4.172 3 C 0.091 3.909 4 H 0.006 0.994 5 C -0.508 4.508 6 H 0.057 0.943 7 C -0.187 4.187 8 N -0.595 5.595 9 Si 0.736 3.264 10 H -0.214 1.214 11 H -0.224 1.224 12 H -0.139 1.139 13 N -0.299 5.299 14 C 0.013 3.987 15 H 0.062 0.938 16 C -0.203 4.203 17 C -0.067 4.067 18 C -0.057 4.057 19 C -0.141 4.141 20 C -0.174 4.174 21 C -0.103 4.103 22 C -0.160 4.160 23 C -0.167 4.167 24 C -0.098 4.098 25 C -0.164 4.164 26 H 0.081 0.919 27 H 0.063 0.937 28 H 0.088 0.912 29 H 0.075 0.925 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.158 0.842 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.106 0.894 39 H 0.138 0.862 40 H 0.103 0.897 41 H 0.082 0.918 42 H 0.084 0.916 43 H 0.143 0.857 44 H 0.106 0.894 45 H 0.082 0.918 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.223 8.699 6.828 14.400 hybrid contribution -0.097 -0.408 -1.719 1.770 sum -9.320 8.291 5.109 13.480 Atomic orbital electron populations 1.21818 0.94867 1.01905 1.01737 1.22094 0.95749 0.98350 1.01013 1.19408 0.93627 0.90863 0.86967 0.99449 1.21248 0.91563 1.37970 1.00031 0.94272 1.25668 0.95546 0.95977 1.01516 1.70114 1.12594 1.48991 1.27828 0.86524 0.82306 0.77339 0.80265 1.21395 1.22409 1.13946 1.60563 1.39550 1.01878 1.27888 1.20477 0.91876 0.88101 0.98214 0.93841 1.22060 0.97248 1.01691 0.99311 1.19602 0.97506 0.95241 0.94396 1.19868 0.93869 0.95826 0.96131 1.20708 1.02806 0.95479 0.95100 1.21062 0.96981 0.98281 1.01059 1.20103 0.97513 0.97251 0.95447 1.20731 0.92625 1.00238 1.02428 1.20949 0.95141 1.01907 0.98708 1.19993 0.96067 0.96897 0.96886 1.20777 0.99323 1.01227 0.95042 0.91950 0.93675 0.91159 0.92531 0.93794 0.93505 0.84227 0.91334 0.91406 0.90736 0.93298 0.92980 0.89363 0.86207 0.89710 0.91791 0.91564 0.85663 0.89362 0.91782 0.92752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.26 9.66 71.98 0.70 -3.56 16 2 C -0.13 -5.27 4.73 30.59 0.14 -5.13 16 3 C 0.20 8.81 1.59 44.17 0.07 8.88 16 4 H -0.01 -0.54 6.10 -2.39 -0.01 -0.55 16 5 C -0.47 -26.31 8.64 25.60 0.22 -26.09 16 6 H 0.04 2.52 7.36 -2.91 -0.02 2.50 16 7 C 0.01 0.49 5.37 84.66 0.45 0.94 16 8 N -0.95 -61.29 13.96 21.45 0.30 -60.99 16 9 Si 0.91 44.20 25.80 68.60 1.77 45.97 16 10 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 11 H -0.30 -14.65 7.11 99.48 0.71 -13.95 16 12 H -0.22 -9.26 5.25 99.48 0.52 -8.74 16 13 N -0.67 -24.25 3.33 -477.16 -1.59 -25.84 16 14 C 0.12 4.14 2.38 44.17 0.11 4.24 16 15 H 0.04 1.56 4.77 -2.39 -0.01 1.54 16 16 C -0.15 -3.57 8.85 71.98 0.64 -2.93 16 17 C -0.07 -2.54 4.15 -19.87 -0.08 -2.62 16 18 C -0.06 -2.19 5.21 -19.87 -0.10 -2.29 16 19 C -0.08 -2.92 8.30 71.23 0.59 -2.33 16 20 C -0.16 -5.84 9.37 22.27 0.21 -5.63 16 21 C -0.10 -3.65 5.88 -19.86 -0.12 -3.77 16 22 C -0.10 -2.83 10.01 71.24 0.71 -2.11 16 23 C -0.15 -5.39 9.33 22.27 0.21 -5.18 16 24 C -0.10 -3.67 5.88 -19.87 -0.12 -3.78 16 25 C -0.11 -3.39 9.40 71.24 0.67 -2.72 16 26 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 27 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.07 1.72 6.69 -2.39 -0.02 1.70 16 29 H 0.06 2.27 8.14 -2.39 -0.02 2.26 16 30 H 0.04 1.89 4.61 -2.39 -0.01 1.88 16 31 H 0.26 15.69 8.31 -92.70 -0.77 14.92 16 32 H 0.34 10.22 6.05 -89.69 -0.54 9.68 16 33 H 0.07 1.66 6.09 -2.39 -0.01 1.64 16 34 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.07 1.50 7.98 -2.39 -0.02 1.48 16 36 H 0.05 2.00 8.06 -2.39 -0.02 1.98 16 37 H 0.05 1.54 8.11 -2.38 -0.02 1.52 16 38 H 0.09 2.70 4.17 -2.39 -0.01 2.69 16 39 H 0.12 4.04 8.06 -2.91 -0.02 4.02 16 40 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 41 H 0.06 1.70 8.09 -2.38 -0.02 1.68 16 42 H 0.07 1.71 8.09 -2.39 -0.02 1.69 16 43 H 0.13 3.92 8.06 -2.91 -0.02 3.90 16 44 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 45 H 0.06 1.91 8.04 -2.39 -0.02 1.89 16 46 H 0.05 1.87 6.20 -2.39 -0.01 1.86 16 Total: -1.00 -69.21 344.98 5.01 -64.20 By element: Atomic # 1 Polarization: 30.53 SS G_CDS: 0.23 Total: 30.76 kcal Atomic # 6 Polarization: -58.39 SS G_CDS: 4.30 Total: -54.09 kcal Atomic # 7 Polarization: -85.54 SS G_CDS: -1.29 Total: -86.83 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 1.77 Total: 45.97 kcal Total: -69.21 5.01 -64.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054182995.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.510 kcal (2) G-P(sol) polarization free energy of solvation -69.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds