Wall clock time and date at job start Mon Mar 30 2020 01:24:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47033 * 2 1 4 4 H 1.09008 * 109.47330 * 56.18267 * 3 2 1 5 5 C 1.50700 * 109.47296 * 176.18203 * 3 2 1 6 6 H 1.08003 * 120.00124 * 119.99653 * 5 3 2 7 7 C 1.37879 * 120.00229 * 300.00340 * 5 3 2 8 8 N 1.31507 * 119.99661 * 359.97438 * 7 5 3 9 9 Si 1.86791 * 120.00031 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47572 * 59.99960 * 9 7 5 11 11 H 1.48500 * 109.47151 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47324 * 299.99869 * 9 7 5 13 13 N 1.46903 * 109.47312 * 296.18586 * 3 2 1 14 14 C 1.46903 * 111.00159 * 153.02157 * 13 3 2 15 15 H 1.09004 * 109.47139 * 39.69176 * 14 13 3 16 16 C 1.53001 * 109.46925 * 279.69358 * 14 13 3 17 17 C 1.50702 * 109.47191 * 159.69190 * 14 13 3 18 18 C 1.38229 * 120.00134 * 229.01260 * 17 14 13 19 19 C 1.50702 * 119.99854 * 359.97438 * 18 17 14 20 20 C 1.38230 * 120.00080 * 179.76408 * 18 17 14 21 21 C 1.38234 * 119.99788 * 0.48563 * 20 18 17 22 22 C 1.50705 * 119.99866 * 179.76816 * 21 20 18 23 23 C 1.38233 * 120.00407 * 359.78915 * 21 20 18 24 24 C 1.38233 * 119.99633 * 49.28184 * 17 14 13 25 25 C 1.50698 * 120.00662 * 0.02562 * 24 17 14 26 26 H 1.09001 * 109.47402 * 175.98420 * 1 2 3 27 27 H 1.09000 * 109.47379 * 295.98791 * 1 2 3 28 28 H 1.09001 * 109.47025 * 55.98647 * 1 2 3 29 29 H 1.08994 * 109.46840 * 119.99597 * 2 1 3 30 30 H 1.08994 * 109.47267 * 240.00314 * 2 1 3 31 31 H 0.96999 * 119.99943 * 179.97438 * 8 7 5 32 32 H 1.00896 * 110.99765 * 276.97267 * 13 3 2 33 33 H 1.09002 * 109.46794 * 186.16895 * 16 14 13 34 34 H 1.09006 * 109.47053 * 306.15829 * 16 14 13 35 35 H 1.08993 * 109.47304 * 66.16407 * 16 14 13 36 36 H 1.09003 * 109.47281 * 83.04972 * 19 18 17 37 37 H 1.09005 * 109.47165 * 203.05368 * 19 18 17 38 38 H 1.09003 * 109.47500 * 323.05154 * 19 18 17 39 39 H 1.08001 * 120.00182 * 180.24835 * 20 18 17 40 40 H 1.09007 * 109.46960 * 270.01889 * 22 21 20 41 41 H 1.08997 * 109.46968 * 30.01614 * 22 21 20 42 42 H 1.09001 * 109.46915 * 150.01987 * 22 21 20 43 43 H 1.07996 * 120.00051 * 179.97438 * 23 21 20 44 44 H 1.09003 * 109.46879 * 83.67032 * 25 24 17 45 45 H 1.08993 * 109.47373 * 203.66907 * 25 24 17 46 46 H 1.08999 * 109.46705 * 323.67311 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6218 1.9758 0.8538 5 6 3.5440 1.4436 0.0946 6 1 4.1341 1.8935 -0.6901 7 6 4.1668 0.8702 1.1829 8 7 3.4482 0.3226 2.1386 9 14 6.0310 0.8709 1.2997 10 1 6.5265 2.2708 1.2994 11 1 6.4485 0.1978 2.5559 12 1 6.6003 0.1441 0.1365 13 7 1.6270 2.1079 -1.2428 14 6 1.5062 3.5590 -1.0481 15 1 2.3192 3.9092 -0.4121 16 6 0.1654 3.8742 -0.3818 17 6 1.5788 4.2529 -2.3839 18 6 2.4279 5.3296 -2.5582 19 6 3.2806 5.8100 -1.4122 20 6 2.4981 5.9630 -3.7848 21 6 1.7118 5.5260 -4.8343 22 6 1.7844 6.2198 -6.1702 23 6 0.8584 4.4528 -4.6585 24 6 0.7921 3.8160 -3.4333 25 6 -0.1385 2.6463 -3.2415 26 1 -0.3634 -1.0251 -0.0720 27 1 -0.3634 0.4503 0.9237 28 1 -0.3633 0.5749 -0.8518 29 1 1.8932 -0.5137 0.8900 30 1 1.8933 -0.5137 -0.8900 31 1 3.8863 -0.0811 2.9040 32 1 2.2646 1.8960 -1.9955 33 1 0.0273 4.9545 -0.3366 34 1 -0.6425 3.4287 -0.9624 35 1 0.1562 3.4642 0.6280 36 1 4.1836 5.2026 -1.3517 37 1 3.5540 6.8526 -1.5748 38 1 2.7207 5.7223 -0.4810 39 1 3.1644 6.8018 -3.9221 40 1 1.0548 7.0291 -6.1994 41 1 2.7851 6.6274 -6.3139 42 1 1.5659 5.5048 -6.9633 43 1 0.2438 4.1116 -5.4784 44 1 -1.0712 2.9933 -2.7968 45 1 -0.3458 2.1849 -4.2069 46 1 0.3285 1.9149 -2.5819 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054182998.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:25 Heat of formation + Delta-G solvation = 1.689547 kcal Electronic energy + Delta-G solvation = -22395.813545 eV Core-core repulsion = 19477.246135 eV Total energy + Delta-G solvation = -2918.567410 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.80545 -36.67699 -34.15313 -33.25978 -32.00031 -31.08966 -28.83836 -27.59653 -26.46994 -26.35677 -25.76903 -22.90661 -21.27793 -20.40934 -19.36992 -19.33763 -16.68723 -15.93580 -15.51373 -14.74023 -14.21678 -14.05045 -13.82423 -13.51834 -13.26514 -13.04364 -12.96300 -12.66535 -12.60168 -12.40210 -12.16463 -11.98492 -11.94321 -11.44188 -11.41843 -11.24954 -11.11991 -11.06935 -10.84012 -10.72288 -10.63086 -10.49437 -10.09007 -9.97375 -9.57116 -9.49874 -8.97263 -8.36686 -8.20622 -8.01939 -7.17608 -5.99379 -4.11995 1.66260 1.72896 3.27592 3.33069 3.35755 4.00146 4.39402 4.99163 5.00418 5.20083 5.22390 5.27974 5.35879 5.51605 5.56967 5.60476 5.76111 5.83200 5.90102 5.97506 6.00935 6.04850 6.09389 6.18371 6.29551 6.33030 6.40635 6.49186 6.52026 6.52974 6.62762 6.69398 6.81398 6.86454 6.86800 7.04738 7.13365 7.16247 7.21862 7.40414 7.51945 7.60728 7.78387 8.09607 8.17962 8.33645 8.64650 9.00393 9.55516 11.00524 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.017849 B = 0.005818 C = 0.004895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.328146 B = 4811.721303 C = 5718.716843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.106 4.106 3 C 0.213 3.787 4 H 0.035 0.965 5 C -0.543 4.543 6 H 0.052 0.948 7 C 0.069 3.931 8 N -0.885 5.885 9 Si 0.886 3.114 10 H -0.279 1.279 11 H -0.287 1.287 12 H -0.278 1.278 13 N -0.673 5.673 14 C 0.124 3.876 15 H 0.059 0.941 16 C -0.136 4.136 17 C -0.084 4.084 18 C -0.072 4.072 19 C -0.116 4.116 20 C -0.135 4.135 21 C -0.091 4.091 22 C -0.109 4.109 23 C -0.137 4.137 24 C -0.049 4.049 25 C -0.147 4.147 26 H 0.023 0.977 27 H 0.035 0.965 28 H 0.051 0.949 29 H 0.089 0.911 30 H 0.030 0.970 31 H 0.261 0.739 32 H 0.331 0.669 33 H 0.042 0.958 34 H 0.061 0.939 35 H 0.057 0.943 36 H 0.072 0.928 37 H 0.058 0.942 38 H 0.071 0.929 39 H 0.113 0.887 40 H 0.064 0.936 41 H 0.061 0.939 42 H 0.062 0.938 43 H 0.113 0.887 44 H 0.059 0.941 45 H 0.044 0.956 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.926 8.909 -10.228 14.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.144 4.144 3 C 0.106 3.894 4 H 0.053 0.947 5 C -0.582 4.582 6 H 0.070 0.930 7 C -0.133 4.133 8 N -0.523 5.523 9 Si 0.714 3.286 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.203 1.203 13 N -0.303 5.303 14 C 0.014 3.986 15 H 0.077 0.923 16 C -0.194 4.194 17 C -0.084 4.084 18 C -0.073 4.073 19 C -0.173 4.173 20 C -0.153 4.153 21 C -0.092 4.092 22 C -0.166 4.166 23 C -0.155 4.155 24 C -0.049 4.049 25 C -0.203 4.203 26 H 0.042 0.958 27 H 0.054 0.946 28 H 0.070 0.930 29 H 0.107 0.893 30 H 0.049 0.951 31 H 0.071 0.929 32 H 0.148 0.852 33 H 0.061 0.939 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.091 0.909 37 H 0.077 0.923 38 H 0.090 0.910 39 H 0.131 0.869 40 H 0.083 0.917 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.131 0.869 44 H 0.077 0.923 45 H 0.063 0.937 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -5.581 8.685 -9.912 14.311 hybrid contribution 2.083 0.321 0.083 2.109 sum -3.498 9.005 -9.829 13.782 Atomic orbital electron populations 1.21738 0.99052 0.98441 1.00412 1.21491 0.92013 0.99259 1.01675 1.19206 0.92568 0.91120 0.86549 0.94731 1.21812 0.92658 1.37889 1.05890 0.92977 1.24898 0.97774 0.95024 0.95648 1.69860 1.34931 1.37896 1.09611 0.86757 0.86325 0.78155 0.77337 1.20446 1.21276 1.20339 1.60964 1.53643 1.05765 1.09946 1.20336 0.97535 0.89538 0.91213 0.92315 1.21830 0.97389 0.99377 1.00797 1.19892 0.96342 0.96029 0.96163 1.19780 0.96875 0.95561 0.95063 1.20831 0.99418 1.00385 0.96634 1.20737 1.00967 1.00973 0.92643 1.19763 0.97226 0.96645 0.95518 1.20729 1.01916 0.99929 0.94015 1.20874 1.00350 0.96992 0.97326 1.19809 0.96305 0.96504 0.92322 1.21561 0.98226 0.97730 1.02821 0.95750 0.94602 0.93018 0.89255 0.95135 0.92872 0.85245 0.93923 0.92023 0.92433 0.90923 0.92316 0.90985 0.86879 0.91719 0.91997 0.91937 0.86867 0.92255 0.93678 0.84931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.74 9.84 37.16 0.37 -2.38 16 2 C -0.11 -2.44 5.44 -26.73 -0.15 -2.59 16 3 C 0.21 5.00 1.80 -68.86 -0.12 4.88 16 4 H 0.03 0.90 6.84 -51.92 -0.35 0.55 16 5 C -0.54 -14.20 8.35 -34.44 -0.29 -14.48 16 6 H 0.05 1.37 7.71 -52.48 -0.40 0.97 16 7 C 0.07 1.85 5.30 -17.82 -0.09 1.76 16 8 N -0.88 -24.49 11.30 55.43 0.63 -23.87 16 9 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 13 N -0.67 -13.26 2.32 -102.16 -0.24 -13.50 16 14 C 0.12 2.25 2.09 -68.86 -0.14 2.11 16 15 H 0.06 1.19 5.54 -51.93 -0.29 0.91 16 16 C -0.14 -2.30 9.10 37.16 0.34 -1.97 16 17 C -0.08 -1.41 4.66 -104.63 -0.49 -1.90 16 18 C -0.07 -1.14 5.88 -104.63 -0.62 -1.76 16 19 C -0.12 -1.70 9.04 36.01 0.33 -1.38 16 20 C -0.14 -1.93 9.33 -39.59 -0.37 -2.30 16 21 C -0.09 -1.24 5.88 -104.62 -0.62 -1.86 16 22 C -0.11 -1.12 10.01 36.01 0.36 -0.76 16 23 C -0.14 -1.97 9.33 -39.58 -0.37 -2.34 16 24 C -0.05 -0.78 5.72 -104.62 -0.60 -1.37 16 25 C -0.15 -2.20 8.48 36.00 0.31 -1.89 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.05 0.96 7.21 -51.93 -0.37 0.58 16 29 H 0.09 2.33 5.98 -51.93 -0.31 2.02 16 30 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 32 H 0.33 6.79 7.85 -39.29 -0.31 6.48 16 33 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.06 1.00 5.83 -51.93 -0.30 0.70 16 35 H 0.06 1.04 7.22 -51.93 -0.38 0.66 16 36 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 37 H 0.06 0.72 8.04 -51.93 -0.42 0.30 16 38 H 0.07 1.08 6.73 -51.93 -0.35 0.73 16 39 H 0.11 1.39 8.06 -52.49 -0.42 0.96 16 40 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 41 H 0.06 0.58 8.09 -51.93 -0.42 0.16 16 42 H 0.06 0.58 8.09 -51.93 -0.42 0.16 16 43 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 44 H 0.06 0.85 6.98 -51.93 -0.36 0.49 16 45 H 0.04 0.60 8.04 -51.93 -0.42 0.19 16 46 H 0.13 2.22 4.30 -51.93 -0.22 2.00 16 LS Contribution 352.43 15.07 5.31 5.31 Total: -1.00 -26.56 352.43 -9.32 -35.88 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: -7.85 Total: 8.49 kcal Atomic # 6 Polarization: -26.07 SS G_CDS: -2.15 Total: -28.22 kcal Atomic # 7 Polarization: -37.75 SS G_CDS: 0.39 Total: -37.36 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -26.56 -9.32 -35.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054182998.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.566 kcal (2) G-P(sol) polarization free energy of solvation -26.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds