Wall clock time and date at job start Mon Mar 30 2020 01:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31424 * 1 3 3 Si 1.86803 * 120.00081 * 2 1 4 4 H 1.48496 * 109.47286 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46984 * 300.00161 * 3 2 1 6 6 H 1.48498 * 109.47391 * 59.99886 * 3 2 1 7 7 C 1.38797 * 120.00109 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99989 * 179.97438 * 7 2 1 9 9 O 1.34858 * 119.99942 * 359.97438 * 7 2 1 10 10 C 1.34775 * 116.99811 * 180.02562 * 9 7 2 11 11 O 1.21529 * 120.00259 * 359.97438 * 10 9 7 12 12 C 1.47421 * 119.99809 * 180.02562 * 10 9 7 13 13 C 1.39828 * 120.09511 * 0.31162 * 12 10 9 14 14 C 1.37669 * 119.90282 * 180.25633 * 13 12 10 15 15 C 1.39023 * 120.09521 * 359.45147 * 14 13 12 16 16 O 1.35703 * 119.90633 * 180.27977 * 15 14 13 17 17 C 1.42895 * 117.00116 * 180.02562 * 16 15 14 18 18 F 1.39901 * 109.47264 * 59.99560 * 17 16 15 19 19 F 1.39900 * 109.47343 * 179.97438 * 17 16 15 20 20 F 1.39900 * 109.47099 * 299.99752 * 17 16 15 21 21 C 1.39028 * 120.19196 * 0.25495 * 15 14 13 22 22 C 1.37674 * 120.09454 * 0.02562 * 21 15 14 23 23 H 0.96997 * 120.00022 * 359.97438 * 1 2 3 24 24 H 1.08004 * 120.05246 * 0.02562 * 13 12 10 25 25 H 1.08002 * 119.95657 * 179.73349 * 14 13 12 26 26 H 1.07993 * 119.94894 * 180.02562 * 21 15 14 27 27 H 1.07995 * 120.04666 * 180.02562 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2483 1.6177 0.0000 4 1 3.7082 1.3464 -0.0006 5 1 1.8895 2.3964 -1.2125 6 1 1.8896 2.3965 1.2124 7 6 2.0082 -1.2020 -0.0005 8 1 3.0883 -1.2020 -0.0010 9 8 1.3340 -2.3699 -0.0005 10 6 2.0680 -3.5002 -0.0005 11 8 3.2817 -3.4366 -0.0010 12 6 1.3988 -4.8137 -0.0011 13 6 0.0026 -4.8893 -0.0082 14 6 -0.6183 -6.1180 -0.0034 15 6 0.1408 -7.2826 -0.0030 16 8 -0.4752 -8.4918 -0.0039 17 6 0.3647 -9.6478 -0.0029 18 9 1.1708 -9.6375 1.1405 19 9 -0.4282 -10.8004 -0.0035 20 9 1.1739 -9.6374 -1.1440 21 6 1.5293 -7.2122 -0.0021 22 6 2.1584 -5.9876 -0.0011 23 1 -0.4850 0.8400 0.0004 24 1 -0.5880 -3.9850 -0.0137 25 1 -1.6967 -6.1773 -0.0045 26 1 2.1151 -8.1194 -0.0022 27 1 3.2370 -5.9338 -0.0008 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060759515.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:21 Heat of formation + Delta-G solvation = -246.568469 kcal Electronic energy + Delta-G solvation = -20579.805643 eV Core-core repulsion = 16467.565177 eV Total energy + Delta-G solvation = -4112.240466 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 276.044 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -50.62256 -48.35500 -48.20204 -40.31648 -39.07503 -37.32198 -35.18060 -32.29851 -31.08013 -30.47346 -26.41016 -25.54081 -23.40549 -22.80468 -20.59296 -19.72367 -19.32681 -19.18860 -17.81348 -17.34967 -16.53357 -15.62785 -15.39183 -15.00470 -14.88065 -14.71755 -14.66170 -14.63399 -14.49775 -14.32983 -14.28658 -14.11777 -13.38541 -13.28107 -12.89374 -12.14662 -12.04174 -11.64401 -11.26789 -10.98342 -10.53742 -10.46577 -9.92965 -9.19724 -9.05338 -8.69900 -8.48414 -6.54891 -4.16744 0.92044 1.33040 1.37191 2.67265 3.02511 3.13918 3.21441 3.25535 3.60128 3.79987 3.83858 4.17331 4.42906 4.61272 4.74914 5.06372 5.13254 5.43950 5.52215 5.80633 6.01797 6.10714 6.42633 6.51557 6.81838 6.95396 7.29404 7.82947 8.60327 8.94040 9.72038 10.62577 Molecular weight = 276.04amu Principal moments of inertia in cm(-1) A = 0.052963 B = 0.003636 C = 0.003476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.543367 B = 7698.242497 C = 8052.293597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.041 3.959 3 Si 0.946 3.054 4 H -0.264 1.264 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.373 4.373 8 H 0.099 0.901 9 O -0.203 6.203 10 C 0.430 3.570 11 O -0.553 6.553 12 C -0.101 4.101 13 C -0.037 4.037 14 C -0.132 4.132 15 C 0.107 3.893 16 O -0.309 6.309 17 C 0.603 3.397 18 F -0.165 7.165 19 F -0.135 7.135 20 F -0.165 7.165 21 C -0.202 4.202 22 C -0.031 4.031 23 H 0.272 0.728 24 H 0.157 0.843 25 H 0.142 0.858 26 H 0.135 0.865 27 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.266 -16.259 -0.013 16.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.164 4.164 3 Si 0.770 3.230 4 H -0.188 1.188 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.448 4.448 8 H 0.117 0.883 9 O -0.110 6.110 10 C 0.279 3.721 11 O -0.452 6.452 12 C -0.102 4.102 13 C -0.056 4.056 14 C -0.150 4.150 15 C 0.065 3.935 16 O -0.229 6.229 17 C 0.512 3.488 18 F -0.147 7.147 19 F -0.116 7.116 20 F -0.147 7.147 21 C -0.220 4.220 22 C -0.050 4.050 23 H 0.082 0.918 24 H 0.175 0.825 25 H 0.160 0.840 26 H 0.153 0.847 27 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -2.321 -16.128 -0.015 16.294 hybrid contribution 0.586 0.404 0.001 0.712 sum -1.735 -15.724 -0.014 15.819 Atomic orbital electron populations 1.69975 1.06088 1.27992 1.45219 1.25406 0.95890 0.99036 0.96064 0.85563 0.79530 0.79678 0.78234 1.18800 1.20040 1.20035 1.21389 0.92651 0.79633 1.51174 0.88292 1.83884 1.39224 1.13294 1.74601 1.20557 0.85880 0.85309 0.80364 1.90640 1.15008 1.87789 1.51739 1.19512 0.93581 0.92100 1.05018 1.21532 0.93877 0.97579 0.92584 1.20377 1.00482 0.88600 1.05590 1.18931 0.91708 0.81958 1.00893 1.86356 1.34864 1.12620 1.89103 1.19365 0.75178 0.79443 0.74787 1.93307 1.73787 1.96220 1.51380 1.93295 1.74895 1.47097 1.96335 1.93307 1.73608 1.96219 1.51552 1.21347 0.92172 0.99840 1.08686 1.21017 1.01011 0.89601 0.93359 0.91834 0.82522 0.84029 0.84747 0.83819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.03 13.67 55.49 0.76 -23.27 15 2 C 0.04 1.12 5.50 -17.52 -0.10 1.02 15 3 Si 0.95 20.59 29.55 -169.99 -5.02 15.56 15 4 H -0.26 -5.68 7.11 56.52 0.40 -5.28 15 5 H -0.27 -5.79 7.11 56.52 0.40 -5.39 15 6 H -0.27 -5.79 7.11 56.52 0.40 -5.39 15 7 C -0.37 -10.70 9.65 30.94 0.30 -10.40 15 8 H 0.10 2.87 6.86 -52.48 -0.36 2.51 15 9 O -0.20 -5.64 8.98 -21.77 -0.20 -5.83 15 10 C 0.43 10.66 7.83 34.47 0.27 10.93 15 11 O -0.55 -14.81 15.59 -19.29 -0.30 -15.11 15 12 C -0.10 -1.96 5.87 -104.97 -0.62 -2.57 15 13 C -0.04 -0.63 9.61 -39.20 -0.38 -1.01 15 14 C -0.13 -1.86 9.97 -39.50 -0.39 -2.25 15 15 C 0.11 1.50 6.49 -39.00 -0.25 1.25 15 16 O -0.31 -3.87 10.36 -18.81 -0.19 -4.07 15 17 C 0.60 6.59 3.42 101.05 0.35 6.94 15 18 F -0.16 -1.82 15.55 2.25 0.04 -1.78 15 19 F -0.13 -1.35 17.53 2.25 0.04 -1.31 15 20 F -0.16 -1.81 15.54 2.25 0.04 -1.78 15 21 C -0.20 -2.87 8.23 -39.49 -0.33 -3.20 15 22 C -0.03 -0.52 9.59 -39.20 -0.38 -0.90 15 23 H 0.27 6.95 8.31 -40.82 -0.34 6.61 15 24 H 0.16 2.74 7.60 -52.48 -0.40 2.35 15 25 H 0.14 1.62 8.06 -52.49 -0.42 1.20 15 26 H 0.13 1.65 5.07 -52.49 -0.27 1.38 15 27 H 0.14 2.33 7.64 -52.49 -0.40 1.93 15 LS Contribution 267.79 15.07 4.04 4.04 Total: -1.00 -30.54 267.79 -3.32 -33.85 By element: Atomic # 1 Polarization: 0.90 SS G_CDS: -0.98 Total: -0.09 kcal Atomic # 6 Polarization: 1.32 SS G_CDS: -1.52 Total: -0.21 kcal Atomic # 7 Polarization: -24.03 SS G_CDS: 0.76 Total: -23.27 kcal Atomic # 8 Polarization: -24.32 SS G_CDS: -0.69 Total: -25.01 kcal Atomic # 9 Polarization: -4.98 SS G_CDS: 0.11 Total: -4.87 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -30.54 -3.32 -33.85 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060759515.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -212.716 kcal (2) G-P(sol) polarization free energy of solvation -30.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -243.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -246.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds