Wall clock time and date at job start Mon Mar 30 2020 01:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31424 * 1 3 3 Si 1.86803 * 120.00081 * 2 1 4 4 H 1.48496 * 109.47286 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46984 * 300.00161 * 3 2 1 6 6 H 1.48498 * 109.47391 * 59.99886 * 3 2 1 7 7 C 1.38797 * 120.00109 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99989 * 179.97438 * 7 2 1 9 9 O 1.34858 * 119.99942 * 359.97438 * 7 2 1 10 10 C 1.34775 * 116.99811 * 180.02562 * 9 7 2 11 11 O 1.21529 * 120.00259 * 359.97438 * 10 9 7 12 12 C 1.47421 * 119.99809 * 180.02562 * 10 9 7 13 13 C 1.39828 * 120.09511 * 0.31162 * 12 10 9 14 14 C 1.37669 * 119.90282 * 180.25633 * 13 12 10 15 15 C 1.39023 * 120.09521 * 359.45147 * 14 13 12 16 16 O 1.35703 * 119.90633 * 180.27977 * 15 14 13 17 17 C 1.42895 * 117.00116 * 180.02562 * 16 15 14 18 18 F 1.39901 * 109.47264 * 59.99560 * 17 16 15 19 19 F 1.39900 * 109.47343 * 179.97438 * 17 16 15 20 20 F 1.39900 * 109.47099 * 299.99752 * 17 16 15 21 21 C 1.39028 * 120.19196 * 0.25495 * 15 14 13 22 22 C 1.37674 * 120.09454 * 0.02562 * 21 15 14 23 23 H 0.96997 * 120.00022 * 359.97438 * 1 2 3 24 24 H 1.08004 * 120.05246 * 0.02562 * 13 12 10 25 25 H 1.08002 * 119.95657 * 179.73349 * 14 13 12 26 26 H 1.07993 * 119.94894 * 180.02562 * 21 15 14 27 27 H 1.07995 * 120.04666 * 180.02562 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2483 1.6177 0.0000 4 1 3.7082 1.3464 -0.0006 5 1 1.8895 2.3964 -1.2125 6 1 1.8896 2.3965 1.2124 7 6 2.0082 -1.2020 -0.0005 8 1 3.0883 -1.2020 -0.0010 9 8 1.3340 -2.3699 -0.0005 10 6 2.0680 -3.5002 -0.0005 11 8 3.2817 -3.4366 -0.0010 12 6 1.3988 -4.8137 -0.0011 13 6 0.0026 -4.8893 -0.0082 14 6 -0.6183 -6.1180 -0.0034 15 6 0.1408 -7.2826 -0.0030 16 8 -0.4752 -8.4918 -0.0039 17 6 0.3647 -9.6478 -0.0029 18 9 1.1708 -9.6375 1.1405 19 9 -0.4282 -10.8004 -0.0035 20 9 1.1739 -9.6374 -1.1440 21 6 1.5293 -7.2122 -0.0021 22 6 2.1584 -5.9876 -0.0011 23 1 -0.4850 0.8400 0.0004 24 1 -0.5880 -3.9850 -0.0137 25 1 -1.6967 -6.1773 -0.0045 26 1 2.1151 -8.1194 -0.0022 27 1 3.2370 -5.9338 -0.0008 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060759515.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:21 Heat of formation + Delta-G solvation = -265.185648 kcal Electronic energy + Delta-G solvation = -20580.612944 eV Core-core repulsion = 16467.565177 eV Total energy + Delta-G solvation = -4113.047767 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 276.044 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -51.50418 -49.21062 -49.09396 -41.62761 -40.83974 -38.68634 -37.19606 -34.35430 -32.36163 -31.85685 -27.86516 -27.11837 -24.89092 -24.01918 -22.19063 -20.86118 -20.22145 -20.21986 -19.85300 -18.97131 -17.71635 -17.30493 -16.65396 -16.41280 -16.30573 -16.07198 -15.86545 -15.78481 -15.57658 -15.49735 -15.22441 -15.19875 -14.84310 -14.48572 -14.27215 -13.79708 -13.51531 -13.45191 -12.99005 -12.41165 -12.31519 -12.15461 -11.97683 -11.20646 -10.72388 -10.30256 -9.82013 -8.58388 -6.34612 -0.46183 0.11722 0.34203 1.33756 1.35443 1.53618 1.65203 1.72254 2.08444 2.54963 2.65675 2.68726 2.91568 3.01136 3.43435 3.56191 3.93130 4.11404 4.21918 4.40441 4.78554 4.80769 4.98549 5.15019 5.17519 5.34411 5.67374 5.78733 6.57368 6.86642 7.68385 8.61994 Molecular weight = 276.04amu Principal moments of inertia in cm(-1) A = 0.052963 B = 0.003636 C = 0.003476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.543367 B = 7698.242497 C = 8052.293597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C -0.001 4.001 3 Si 1.019 2.981 4 H -0.265 1.265 5 H -0.259 1.259 6 H -0.259 1.259 7 C -0.418 4.418 8 H 0.083 0.917 9 O -0.229 6.229 10 C 0.433 3.567 11 O -0.581 6.581 12 C -0.136 4.136 13 C -0.034 4.034 14 C -0.121 4.121 15 C 0.128 3.872 16 O -0.306 6.306 17 C 0.608 3.392 18 F -0.163 7.163 19 F -0.126 7.126 20 F -0.163 7.163 21 C -0.194 4.194 22 C -0.026 4.026 23 H 0.281 0.719 24 H 0.145 0.855 25 H 0.175 0.825 26 H 0.159 0.841 27 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.901 -17.685 -0.014 17.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.202 4.202 3 Si 0.837 3.163 4 H -0.189 1.189 5 H -0.183 1.183 6 H -0.183 1.183 7 C -0.494 4.494 8 H 0.101 0.899 9 O -0.136 6.136 10 C 0.283 3.717 11 O -0.481 6.481 12 C -0.138 4.138 13 C -0.052 4.052 14 C -0.139 4.139 15 C 0.085 3.915 16 O -0.226 6.226 17 C 0.517 3.483 18 F -0.145 7.145 19 F -0.107 7.107 20 F -0.145 7.145 21 C -0.212 4.212 22 C -0.044 4.044 23 H 0.091 0.909 24 H 0.163 0.837 25 H 0.193 0.807 26 H 0.176 0.824 27 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -2.972 -17.595 -0.015 17.845 hybrid contribution 0.730 0.523 0.001 0.898 sum -2.242 -17.073 -0.014 17.219 Atomic orbital electron populations 1.70044 1.07546 1.29592 1.45851 1.26547 0.96946 1.02215 0.94536 0.84553 0.77785 0.74613 0.79323 1.18938 1.18337 1.18325 1.21525 0.92334 0.80947 1.54569 0.89934 1.83907 1.39789 1.13892 1.76052 1.21578 0.85861 0.86447 0.77795 1.90591 1.16431 1.88472 1.52619 1.19342 0.94823 0.90037 1.09577 1.21413 0.92669 0.98620 0.92527 1.20557 1.02061 0.87290 1.03954 1.18982 0.91552 0.82692 0.98312 1.86366 1.35154 1.12403 1.88659 1.19272 0.75120 0.79091 0.74800 1.93321 1.73673 1.96170 1.51298 1.93327 1.74700 1.46389 1.96289 1.93321 1.73492 1.96169 1.51469 1.21521 0.92608 0.99534 1.07534 1.21030 1.01008 0.89519 0.92880 0.90930 0.83724 0.80733 0.82358 0.83836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -51.22 13.67 21.63 0.30 -50.92 15 2 C 0.00 -0.07 5.50 84.89 0.47 0.40 15 3 Si 1.02 42.58 29.55 68.60 2.03 44.60 15 4 H -0.27 -11.00 7.11 99.48 0.71 -10.30 15 5 H -0.26 -10.09 7.11 99.48 0.71 -9.38 15 6 H -0.26 -10.08 7.11 99.48 0.71 -9.38 15 7 C -0.42 -25.17 9.65 67.95 0.66 -24.51 15 8 H 0.08 5.07 6.86 -2.91 -0.02 5.05 15 9 O -0.23 -13.36 8.98 10.87 0.10 -13.26 15 10 C 0.43 22.45 7.83 70.24 0.55 23.00 15 11 O -0.58 -32.60 15.59 19.74 0.31 -32.29 15 12 C -0.14 -5.38 5.87 -20.09 -0.12 -5.50 15 13 C -0.03 -1.14 9.61 22.52 0.22 -0.92 15 14 C -0.12 -3.08 9.97 22.32 0.22 -2.85 15 15 C 0.13 3.15 6.49 22.65 0.15 3.29 15 16 O -0.31 -6.47 10.36 -90.23 -0.93 -7.40 15 17 C 0.61 11.11 3.42 113.37 0.39 11.50 15 18 F -0.16 -3.02 15.55 44.97 0.70 -2.32 15 19 F -0.13 -2.10 17.53 44.97 0.79 -1.31 15 20 F -0.16 -3.02 15.54 44.97 0.70 -2.32 15 21 C -0.19 -4.99 8.23 22.33 0.18 -4.81 15 22 C -0.03 -0.85 9.59 22.52 0.22 -0.63 15 23 H 0.28 14.51 8.31 -92.71 -0.77 13.74 15 24 H 0.15 5.21 7.60 -2.91 -0.02 5.19 15 25 H 0.18 3.33 8.06 -2.91 -0.02 3.30 15 26 H 0.16 3.33 5.07 -2.91 -0.01 3.31 15 27 H 0.14 4.62 7.64 -2.91 -0.02 4.60 15 Total: -1.00 -68.27 267.79 8.16 -60.12 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: 1.25 Total: 6.14 kcal Atomic # 6 Polarization: -3.96 SS G_CDS: 2.93 Total: -1.03 kcal Atomic # 7 Polarization: -51.22 SS G_CDS: 0.30 Total: -50.92 kcal Atomic # 8 Polarization: -52.42 SS G_CDS: -0.53 Total: -52.95 kcal Atomic # 9 Polarization: -8.14 SS G_CDS: 2.19 Total: -5.95 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.60 kcal Total: -68.27 8.16 -60.12 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060759515.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -205.068 kcal (2) G-P(sol) polarization free energy of solvation -68.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -273.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -265.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds