Wall clock time and date at job start Mon Mar 30 2020 01:35:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.47418 * 2 1 4 4 C 1.50702 * 109.46741 * 119.99580 * 2 1 3 5 5 H 1.08002 * 119.99921 * 120.00129 * 4 2 1 6 6 C 1.37875 * 120.00361 * 300.00277 * 4 2 1 7 7 N 1.31515 * 120.00301 * 179.97438 * 6 4 2 8 8 Si 1.86807 * 119.99681 * 359.97438 * 6 4 2 9 9 H 1.48506 * 109.46982 * 90.00136 * 8 6 4 10 10 H 1.48495 * 109.46948 * 209.99729 * 8 6 4 11 11 H 1.48494 * 109.47325 * 330.00338 * 8 6 4 12 12 N 1.46901 * 109.47598 * 239.99468 * 2 1 3 13 13 C 1.46894 * 110.99658 * 85.00074 * 12 2 1 14 14 H 1.09002 * 109.47823 * 325.00156 * 13 12 2 15 15 C 1.52998 * 109.47262 * 85.00331 * 13 12 2 16 16 C 1.50703 * 109.47366 * 205.00218 * 13 12 2 17 17 C 1.38234 * 120.00257 * 140.00153 * 16 13 12 18 18 C 1.38230 * 119.99864 * 179.97438 * 17 16 13 19 19 C 1.38235 * 120.00326 * 0.02562 * 18 17 16 20 20 C 1.50702 * 120.00236 * 179.70551 * 19 18 17 21 21 C 1.52995 * 109.47064 * 59.99808 * 20 19 18 22 22 C 1.53003 * 109.46956 * 180.02562 * 20 19 18 23 23 C 1.52999 * 109.46805 * 299.99784 * 20 19 18 24 24 C 1.38234 * 119.99814 * 359.97438 * 19 18 17 25 25 C 1.38234 * 119.99499 * 320.02671 * 16 13 12 26 26 H 1.09004 * 109.47030 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47375 * 300.00433 * 1 2 3 28 28 H 1.09002 * 109.46658 * 60.00968 * 1 2 3 29 29 H 0.97006 * 119.99765 * 179.97438 * 7 6 4 30 30 H 1.00904 * 110.99540 * 321.05138 * 12 2 1 31 31 H 1.08994 * 109.47553 * 179.97438 * 15 13 12 32 32 H 1.09007 * 109.46849 * 300.00051 * 15 13 12 33 33 H 1.09005 * 109.47299 * 59.99437 * 15 13 12 34 34 H 1.08002 * 119.99744 * 359.97438 * 17 16 13 35 35 H 1.08000 * 120.00356 * 179.97438 * 18 17 16 36 36 H 1.08996 * 109.47239 * 60.00747 * 21 20 19 37 37 H 1.09007 * 109.46699 * 179.97438 * 21 20 19 38 38 H 1.08997 * 109.47299 * 299.99551 * 21 20 19 39 39 H 1.09001 * 109.47400 * 59.99825 * 22 20 19 40 40 H 1.09003 * 109.46769 * 179.97438 * 22 20 19 41 41 H 1.09001 * 109.46782 * 299.99106 * 22 20 19 42 42 H 1.08996 * 109.47277 * 59.99986 * 23 20 19 43 43 H 1.08994 * 109.46996 * 180.02562 * 23 20 19 44 44 H 1.09001 * 109.47339 * 300.00045 * 23 20 19 45 45 H 1.08001 * 120.00299 * 179.97438 * 24 19 18 46 46 H 1.07997 * 120.00459 * 359.97438 * 25 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5885 1.1316 6 6 1.6992 -0.2393 2.4828 7 7 2.1370 -0.8595 3.5567 8 14 0.6257 1.2800 2.6540 9 1 -0.8022 0.8746 2.6991 10 1 0.9769 1.9955 3.9070 11 1 0.8490 2.1774 1.4922 12 7 2.0198 -0.6926 -1.1993 13 6 2.0826 0.2224 -2.3468 14 1 1.2578 0.9328 -2.2907 15 6 3.4113 0.9807 -2.3223 16 6 1.9789 -0.5678 -3.6258 17 6 1.2294 -0.0808 -4.6803 18 6 1.1347 -0.8054 -5.8536 19 6 1.7890 -2.0173 -5.9723 20 6 1.6803 -2.8105 -7.2491 21 6 2.2255 -1.9806 -8.4130 22 6 2.4915 -4.1012 -7.1183 23 6 0.2130 -3.1553 -7.5119 24 6 2.5384 -2.5044 -4.9178 25 6 2.6327 -1.7800 -3.7442 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8901 29 1 1.9029 -0.5278 4.4377 30 1 1.4497 -1.4980 -1.4099 31 1 3.4581 1.6593 -3.1739 32 1 3.4863 1.5523 -1.3971 33 1 4.2362 0.2704 -2.3783 34 1 0.7179 0.8659 -4.5874 35 1 0.5489 -0.4252 -6.6774 36 1 3.2708 -1.7350 -8.2259 37 1 2.1473 -2.5545 -9.3365 38 1 1.6472 -1.0613 -8.5061 39 1 2.1026 -4.6923 -6.2891 40 1 2.4125 -4.6751 -8.0416 41 1 3.5368 -3.8559 -6.9309 42 1 -0.3652 -2.2361 -7.6049 43 1 0.1344 -3.7294 -8.4351 44 1 -0.1755 -3.7466 -6.6827 45 1 3.0493 -3.4514 -5.0103 46 1 3.2182 -2.1605 -2.9204 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068609701.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:16 Heat of formation + Delta-G solvation = -6.678173 kcal Electronic energy + Delta-G solvation = -21499.127223 eV Core-core repulsion = 18580.196962 eV Total energy + Delta-G solvation = -2918.930261 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.93975 -38.80004 -36.96200 -34.81092 -33.04157 -31.96673 -29.85485 -29.09058 -28.18539 -28.05553 -27.14027 -24.63705 -23.26827 -22.31465 -21.23103 -19.97906 -18.91043 -17.58275 -16.98943 -16.52900 -16.00445 -15.57393 -15.32681 -15.12974 -14.92446 -14.77249 -14.46750 -14.21163 -14.15066 -13.90999 -13.77137 -13.41928 -13.21602 -12.97593 -12.79842 -12.74540 -12.56147 -12.48144 -12.44761 -12.17670 -12.06336 -11.82181 -11.76652 -11.49007 -11.32255 -11.28494 -11.16211 -10.75060 -9.73567 -9.36420 -9.04775 -8.26611 -6.28583 0.48227 0.58473 1.28801 1.34490 1.44604 2.32075 2.89617 3.07529 3.45153 3.68593 3.87559 3.90878 4.16110 4.16891 4.26039 4.39562 4.43857 4.45174 4.51916 4.58680 4.65651 4.67850 4.69930 4.82557 4.82855 4.88133 4.93744 4.97084 5.04889 5.06819 5.07356 5.09547 5.21418 5.26101 5.29147 5.36473 5.37981 5.41614 5.48510 5.64631 5.68347 5.77385 5.81544 6.08683 6.19274 6.70710 6.74046 6.78926 7.36310 8.90915 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.033336 B = 0.003640 C = 0.003581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.733147 B = 7689.691848 C = 7816.206274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.189 3.811 3 H 0.030 0.970 4 C -0.501 4.501 5 H 0.035 0.965 6 C 0.008 3.992 7 N -0.952 5.952 8 Si 0.951 3.049 9 H -0.268 1.268 10 H -0.299 1.299 11 H -0.250 1.250 12 N -0.673 5.673 13 C 0.121 3.879 14 H 0.044 0.956 15 C -0.128 4.128 16 C -0.096 4.096 17 C -0.119 4.119 18 C -0.118 4.118 19 C -0.076 4.076 20 C -0.029 4.029 21 C -0.135 4.135 22 C -0.145 4.145 23 C -0.137 4.137 24 C -0.128 4.128 25 C -0.110 4.110 26 H 0.052 0.948 27 H 0.037 0.963 28 H 0.057 0.943 29 H 0.265 0.735 30 H 0.334 0.666 31 H 0.071 0.929 32 H 0.042 0.958 33 H 0.051 0.949 34 H 0.130 0.870 35 H 0.138 0.862 36 H 0.049 0.951 37 H 0.070 0.930 38 H 0.059 0.941 39 H 0.054 0.946 40 H 0.070 0.930 41 H 0.056 0.944 42 H 0.059 0.941 43 H 0.071 0.929 44 H 0.046 0.954 45 H 0.134 0.866 46 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.368 -0.460 -26.259 26.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.079 3.921 3 H 0.048 0.952 4 C -0.539 4.539 5 H 0.053 0.947 6 C -0.188 4.188 7 N -0.593 5.593 8 Si 0.778 3.222 9 H -0.194 1.194 10 H -0.226 1.226 11 H -0.174 1.174 12 N -0.304 5.304 13 C 0.012 3.988 14 H 0.062 0.938 15 C -0.185 4.185 16 C -0.096 4.096 17 C -0.137 4.137 18 C -0.135 4.135 19 C -0.076 4.076 20 C -0.029 4.029 21 C -0.193 4.193 22 C -0.202 4.202 23 C -0.194 4.194 24 C -0.146 4.146 25 C -0.128 4.128 26 H 0.071 0.929 27 H 0.055 0.945 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.152 0.848 31 H 0.090 0.910 32 H 0.061 0.939 33 H 0.070 0.930 34 H 0.148 0.852 35 H 0.156 0.844 36 H 0.068 0.932 37 H 0.089 0.911 38 H 0.078 0.922 39 H 0.073 0.927 40 H 0.089 0.911 41 H 0.075 0.925 42 H 0.078 0.922 43 H 0.090 0.910 44 H 0.066 0.934 45 H 0.152 0.848 46 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -2.689 -0.378 -25.920 26.062 hybrid contribution -1.116 0.513 0.974 1.568 sum -3.806 0.136 -24.946 25.235 Atomic orbital electron populations 1.22725 0.99728 1.01248 0.99835 1.19427 0.89725 0.94215 0.88748 0.95227 1.21260 1.30099 1.12443 0.90141 0.94661 1.25801 0.97594 1.00036 0.95386 1.70049 1.48103 1.42619 0.98513 0.85826 0.79037 0.80067 0.77230 1.19381 1.22635 1.17414 1.60609 1.57894 1.09128 1.02746 1.20455 0.97629 0.93242 0.87493 0.93769 1.21726 0.96465 0.99408 1.00947 1.19943 0.98601 0.95771 0.95318 1.21169 0.98933 1.00458 0.93182 1.21096 1.00106 0.94727 0.97611 1.20063 0.96733 0.95185 0.95619 1.19542 0.96826 0.94769 0.91753 1.21867 1.00710 0.99752 0.96920 1.21968 0.99666 0.96192 1.02350 1.21880 0.93902 1.01797 1.01807 1.21341 0.99970 1.00496 0.92804 1.21096 0.99169 0.94660 0.97902 0.92869 0.94494 0.92400 0.92642 0.84765 0.91045 0.93924 0.92952 0.85239 0.84379 0.93171 0.91066 0.92167 0.92728 0.91121 0.92486 0.92196 0.91013 0.93440 0.84829 0.86736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.38 8.63 71.98 0.62 -6.76 16 2 C 0.19 8.83 1.98 44.17 0.09 8.92 16 3 H 0.03 1.43 6.17 -2.39 -0.01 1.42 16 4 C -0.50 -29.16 9.42 25.60 0.24 -28.92 16 5 H 0.04 2.31 8.06 -2.91 -0.02 2.29 16 6 C 0.01 0.49 5.45 84.65 0.46 0.95 16 7 N -0.95 -60.62 13.96 21.45 0.30 -60.32 16 8 Si 0.95 45.49 24.37 68.60 1.67 47.16 16 9 H -0.27 -12.16 6.87 99.48 0.68 -11.48 16 10 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 11 H -0.25 -11.07 6.53 99.48 0.65 -10.42 16 12 N -0.67 -27.42 5.43 -477.16 -2.59 -30.01 16 13 C 0.12 4.04 2.63 44.17 0.12 4.15 16 14 H 0.04 1.45 6.98 -2.39 -0.02 1.43 16 15 C -0.13 -4.12 9.38 71.98 0.67 -3.44 16 16 C -0.10 -2.77 4.71 -19.87 -0.09 -2.87 16 17 C -0.12 -2.89 9.67 22.27 0.22 -2.67 16 18 C -0.12 -2.46 8.71 22.27 0.19 -2.26 16 19 C -0.08 -1.59 4.76 -19.87 -0.09 -1.68 16 20 C -0.03 -0.45 0.85 -52.93 -0.05 -0.50 16 21 C -0.14 -1.79 8.29 71.98 0.60 -1.20 16 22 C -0.14 -2.10 7.13 71.98 0.51 -1.59 16 23 C -0.14 -1.91 8.29 71.98 0.60 -1.32 16 24 C -0.13 -3.10 8.98 22.27 0.20 -2.90 16 25 C -0.11 -3.18 9.01 22.27 0.20 -2.98 16 26 H 0.05 2.20 8.13 -2.38 -0.02 2.18 16 27 H 0.04 1.59 3.27 -2.39 -0.01 1.59 16 28 H 0.06 2.04 7.43 -2.39 -0.02 2.02 16 29 H 0.26 15.78 8.31 -92.70 -0.77 15.01 16 30 H 0.33 13.29 7.73 -89.69 -0.69 12.60 16 31 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.04 1.50 7.43 -2.38 -0.02 1.48 16 33 H 0.05 1.74 8.14 -2.38 -0.02 1.73 16 34 H 0.13 2.74 8.04 -2.91 -0.02 2.72 16 35 H 0.14 2.22 7.10 -2.91 -0.02 2.20 16 36 H 0.05 0.73 8.14 -2.39 -0.02 0.72 16 37 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 38 H 0.06 0.76 7.38 -2.39 -0.02 0.74 16 39 H 0.05 0.85 7.51 -2.39 -0.02 0.83 16 40 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.06 0.85 7.52 -2.39 -0.02 0.84 16 42 H 0.06 0.80 7.39 -2.39 -0.02 0.78 16 43 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 44 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 45 H 0.13 2.84 5.90 -2.91 -0.02 2.82 16 46 H 0.11 3.67 7.72 -2.91 -0.02 3.65 16 Total: -1.00 -65.79 351.18 4.03 -61.76 By element: Atomic # 1 Polarization: 26.31 SS G_CDS: 0.17 Total: 26.47 kcal Atomic # 6 Polarization: -49.55 SS G_CDS: 4.48 Total: -45.06 kcal Atomic # 7 Polarization: -88.04 SS G_CDS: -2.29 Total: -90.33 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 1.67 Total: 47.16 kcal Total: -65.79 4.03 -61.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068609701.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.079 kcal (2) G-P(sol) polarization free energy of solvation -65.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds