Wall clock time and date at job start Mon Mar 30 2020 01:35:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.46855 * 2 1 4 4 C 1.50700 * 109.47249 * 239.99776 * 2 1 3 5 5 H 1.08000 * 119.99407 * 240.00259 * 4 2 1 6 6 C 1.37875 * 120.00285 * 60.00119 * 4 2 1 7 7 N 1.31516 * 119.99614 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00227 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47145 * 89.99828 * 8 6 4 10 10 H 1.48501 * 109.46942 * 209.99870 * 8 6 4 11 11 H 1.48497 * 109.46941 * 329.99828 * 8 6 4 12 12 N 1.46896 * 109.46950 * 119.99522 * 2 1 3 13 13 C 1.46898 * 111.00386 * 273.27995 * 12 2 1 14 14 H 1.09006 * 109.47186 * 34.17520 * 13 12 2 15 15 C 1.52996 * 109.47604 * 154.17577 * 13 12 2 16 16 C 1.50698 * 109.47000 * 274.18039 * 13 12 2 17 17 C 1.38232 * 120.00194 * 319.71937 * 16 13 12 18 18 C 1.38233 * 120.00245 * 180.34510 * 17 16 13 19 19 C 1.38236 * 120.00108 * 359.88482 * 18 17 16 20 20 C 1.50695 * 119.99921 * 180.10763 * 19 18 17 21 21 C 1.52999 * 109.47600 * 239.98358 * 20 19 18 22 22 C 1.53001 * 109.47394 * 359.97438 * 20 19 18 23 23 C 1.53009 * 109.46819 * 119.98284 * 20 19 18 24 24 C 1.38235 * 119.99615 * 0.09606 * 19 18 17 25 25 C 1.38224 * 120.00394 * 359.97095 * 24 19 18 26 26 H 1.09007 * 109.47031 * 174.06876 * 1 2 3 27 27 H 1.08997 * 109.47248 * 294.07388 * 1 2 3 28 28 H 1.09007 * 109.46913 * 54.07424 * 1 2 3 29 29 H 0.97001 * 120.00024 * 180.02562 * 7 6 4 30 30 H 1.00906 * 110.99959 * 37.22965 * 12 2 1 31 31 H 1.09007 * 109.47017 * 55.05180 * 15 13 12 32 32 H 1.09000 * 109.47421 * 175.04664 * 15 13 12 33 33 H 1.08994 * 109.47174 * 295.05595 * 15 13 12 34 34 H 1.08001 * 119.99924 * 0.28350 * 17 16 13 35 35 H 1.08005 * 119.99587 * 180.02562 * 18 17 16 36 36 H 1.08997 * 109.47003 * 59.99633 * 21 20 19 37 37 H 1.08997 * 109.47111 * 180.02562 * 21 20 19 38 38 H 1.09005 * 109.46803 * 300.00258 * 21 20 19 39 39 H 1.08995 * 109.47195 * 59.99794 * 22 20 19 40 40 H 1.08997 * 109.47272 * 179.97438 * 22 20 19 41 41 H 1.08995 * 109.46977 * 299.99627 * 22 20 19 42 42 H 1.08996 * 109.46565 * 59.99981 * 23 20 19 43 43 H 1.08997 * 109.46988 * 179.97438 * 23 20 19 44 44 H 1.09000 * 109.46880 * 299.99752 * 23 20 19 45 45 H 1.08004 * 119.99639 * 179.97438 * 24 19 18 46 46 H 1.08001 * 120.00144 * 180.02562 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6994 -0.2395 -2.4827 7 7 0.9429 0.8295 -2.6034 8 14 2.3215 -1.1206 -4.0079 9 1 1.3429 -2.1619 -4.4118 10 1 2.4868 -0.1416 -5.1122 11 1 3.6294 -1.7585 -3.7120 12 7 2.0197 -0.6924 1.1995 13 6 2.1212 0.2321 2.3365 14 1 1.3219 0.9709 2.2766 15 6 1.9941 -0.5518 3.6442 16 6 3.4555 0.9315 2.2977 17 6 4.5946 0.2285 1.9529 18 6 5.8196 0.8683 1.9241 19 6 5.9052 2.2119 2.2379 20 6 7.2402 2.9099 2.2043 21 6 7.5576 3.4710 3.5918 22 6 8.3270 1.9130 1.7968 23 6 7.1918 4.0546 1.1901 24 6 4.7659 2.9150 2.5824 25 6 3.5412 2.2749 2.6124 26 1 -0.3633 -1.0222 -0.1062 27 1 -0.3633 0.4192 0.9382 28 1 -0.3633 0.6030 -0.8322 29 1 0.7083 1.1607 -3.4845 30 1 1.4330 -1.4814 1.4263 31 1 2.7385 -1.3478 3.6645 32 1 2.1570 0.1194 4.4875 33 1 0.9965 -0.9855 3.7124 34 1 4.5277 -0.8210 1.7069 35 1 6.7095 0.3190 1.6543 36 1 7.5921 2.6556 4.3143 37 1 8.5231 3.9763 3.5673 38 1 6.7835 4.1813 3.8823 39 1 8.1010 1.5131 0.8083 40 1 9.2926 2.4180 1.7720 41 1 8.3615 1.0977 2.5194 42 1 6.4176 4.7647 1.4806 43 1 8.1573 4.5598 1.1660 44 1 6.9657 3.6548 0.2016 45 1 4.8328 3.9646 2.8279 46 1 2.6511 2.8244 2.8811 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068609707.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:18 Heat of formation + Delta-G solvation = -12.366482 kcal Electronic energy + Delta-G solvation = -21836.155039 eV Core-core repulsion = 18916.978114 eV Total energy + Delta-G solvation = -2919.176925 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.82884 -38.65289 -36.80260 -34.88311 -32.57071 -31.87561 -29.84760 -28.44997 -28.15996 -28.05648 -27.19456 -24.55714 -23.10662 -22.39363 -21.44185 -19.92920 -18.34945 -17.35239 -16.86370 -16.50777 -15.89262 -15.53176 -15.24405 -15.14031 -15.08131 -14.43464 -14.27623 -14.14945 -13.89822 -13.74694 -13.43229 -13.26480 -13.00823 -12.85219 -12.79241 -12.75023 -12.52046 -12.38877 -12.33875 -12.17770 -12.13672 -11.96848 -11.82280 -11.66731 -11.35323 -11.25158 -10.98191 -10.48097 -9.64837 -9.24503 -8.95823 -8.08279 -6.17936 0.59704 0.68392 1.41076 1.41879 1.52664 2.44035 2.98551 3.20720 3.61321 3.74783 3.91270 4.07788 4.16726 4.23178 4.31456 4.41455 4.44806 4.48864 4.69720 4.72554 4.75668 4.81868 4.85276 4.88642 4.93045 4.94168 5.00262 5.05399 5.05808 5.09816 5.14851 5.22991 5.28514 5.31283 5.37549 5.42368 5.46807 5.49227 5.69760 5.72443 5.80278 5.86608 5.98787 6.28067 6.31524 6.69347 6.88557 6.98713 7.51598 8.97847 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.015698 B = 0.005294 C = 0.004435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.187275 B = 5287.913343 C = 6312.568779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.224 3.776 3 H -0.006 1.006 4 C -0.507 4.507 5 H 0.054 0.946 6 C 0.008 3.992 7 N -0.924 5.924 8 Si 0.956 3.044 9 H -0.274 1.274 10 H -0.286 1.286 11 H -0.271 1.271 12 N -0.676 5.676 13 C 0.118 3.882 14 H 0.028 0.972 15 C -0.135 4.135 16 C -0.081 4.081 17 C -0.094 4.094 18 C -0.137 4.137 19 C -0.081 4.081 20 C -0.028 4.028 21 C -0.132 4.132 22 C -0.142 4.142 23 C -0.138 4.138 24 C -0.124 4.124 25 C -0.133 4.133 26 H 0.033 0.967 27 H 0.025 0.975 28 H 0.056 0.944 29 H 0.259 0.741 30 H 0.334 0.666 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.115 0.885 35 H 0.132 0.868 36 H 0.053 0.947 37 H 0.073 0.927 38 H 0.057 0.943 39 H 0.047 0.953 40 H 0.073 0.927 41 H 0.060 0.940 42 H 0.056 0.944 43 H 0.075 0.925 44 H 0.038 0.962 45 H 0.133 0.867 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.995 3.922 13.258 17.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.115 3.885 3 H 0.012 0.988 4 C -0.546 4.546 5 H 0.072 0.928 6 C -0.190 4.190 7 N -0.565 5.565 8 Si 0.782 3.218 9 H -0.199 1.199 10 H -0.212 1.212 11 H -0.196 1.196 12 N -0.306 5.306 13 C 0.008 3.992 14 H 0.046 0.954 15 C -0.192 4.192 16 C -0.082 4.082 17 C -0.113 4.113 18 C -0.155 4.155 19 C -0.081 4.081 20 C -0.028 4.028 21 C -0.189 4.189 22 C -0.199 4.199 23 C -0.195 4.195 24 C -0.142 4.142 25 C -0.152 4.152 26 H 0.052 0.948 27 H 0.044 0.956 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.152 0.848 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.133 0.867 35 H 0.150 0.850 36 H 0.072 0.928 37 H 0.091 0.909 38 H 0.076 0.924 39 H 0.066 0.934 40 H 0.092 0.908 41 H 0.079 0.921 42 H 0.075 0.925 43 H 0.094 0.906 44 H 0.058 0.942 45 H 0.151 0.849 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 11.582 4.086 12.956 17.852 hybrid contribution -1.220 -0.206 -1.073 1.638 sum 10.361 3.881 11.882 16.236 Atomic orbital electron populations 1.22226 1.00105 0.99805 0.99094 1.18843 0.89656 0.92310 0.87678 0.98820 1.21423 1.30037 1.12142 0.91001 0.92815 1.25694 0.95609 0.95864 1.01820 1.70034 1.38347 1.24366 1.23749 0.85579 0.78817 0.78264 0.79093 1.19949 1.21197 1.19619 1.60642 1.56651 1.10026 1.03318 1.20411 0.92665 0.94167 0.91957 0.95380 1.21849 1.02298 1.00183 0.94913 1.19989 0.95426 0.93942 0.98844 1.21013 0.92136 1.00453 0.97669 1.21366 0.97739 0.95108 1.01261 1.20010 0.95523 0.93573 0.99017 1.19529 0.90951 0.95303 0.97019 1.21840 1.02108 1.00718 0.94236 1.21942 0.98070 0.98880 1.01031 1.21888 1.02546 0.97240 0.97807 1.21021 0.91829 1.00067 1.01281 1.21154 0.98318 0.94142 1.01565 0.94785 0.95648 0.92534 0.93217 0.84790 0.91740 0.91164 0.91646 0.86678 0.85012 0.92808 0.90853 0.92417 0.93379 0.90850 0.92087 0.92529 0.90582 0.94236 0.84871 0.86204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.49 8.84 71.98 0.64 -6.85 16 2 C 0.22 11.55 2.37 44.17 0.10 11.65 16 3 H -0.01 -0.36 7.65 -2.39 -0.02 -0.38 16 4 C -0.51 -28.72 8.84 25.60 0.23 -28.50 16 5 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 6 C 0.01 0.45 5.30 84.65 0.45 0.90 16 7 N -0.92 -54.74 11.39 21.45 0.24 -54.50 16 8 Si 0.96 45.08 29.54 68.60 2.03 47.11 16 9 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 10 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 11 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 12 N -0.68 -28.52 5.30 -477.17 -2.53 -31.04 16 13 C 0.12 4.27 2.61 44.17 0.12 4.39 16 14 H 0.03 1.09 7.09 -2.38 -0.02 1.08 16 15 C -0.13 -3.73 9.14 71.98 0.66 -3.07 16 16 C -0.08 -2.97 4.66 -19.87 -0.09 -3.07 16 17 C -0.09 -3.44 9.33 22.27 0.21 -3.24 16 18 C -0.14 -4.36 8.98 22.27 0.20 -4.16 16 19 C -0.08 -2.32 4.76 -19.87 -0.09 -2.42 16 20 C -0.03 -0.61 0.85 -52.93 -0.05 -0.66 16 21 C -0.13 -2.32 8.29 71.98 0.60 -1.73 16 22 C -0.14 -2.82 7.13 71.98 0.51 -2.30 16 23 C -0.14 -2.94 8.29 71.99 0.60 -2.34 16 24 C -0.12 -3.66 8.71 22.27 0.19 -3.46 16 25 C -0.13 -4.45 9.67 22.27 0.22 -4.24 16 26 H 0.03 1.59 8.14 -2.38 -0.02 1.57 16 27 H 0.02 1.08 7.52 -2.39 -0.02 1.07 16 28 H 0.06 3.10 6.25 -2.38 -0.01 3.08 16 29 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 30 H 0.33 13.07 8.07 -89.69 -0.72 12.35 16 31 H 0.06 1.75 8.14 -2.38 -0.02 1.73 16 32 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.12 4.39 7.72 -2.91 -0.02 4.37 16 35 H 0.13 3.71 5.90 -2.91 -0.02 3.69 16 36 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.06 1.00 7.39 -2.38 -0.02 0.98 16 39 H 0.05 1.07 7.51 -2.39 -0.02 1.05 16 40 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.06 1.16 7.51 -2.39 -0.02 1.15 16 42 H 0.06 1.19 7.39 -2.39 -0.02 1.17 16 43 H 0.08 1.27 8.14 -2.39 -0.02 1.26 16 44 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.13 3.25 7.10 -2.91 -0.02 3.23 16 46 H 0.12 3.67 8.04 -2.91 -0.02 3.65 16 Total: -1.00 -62.86 359.86 4.43 -58.43 By element: Atomic # 1 Polarization: 28.89 SS G_CDS: 0.21 Total: 29.09 kcal Atomic # 6 Polarization: -53.57 SS G_CDS: 4.48 Total: -49.09 kcal Atomic # 7 Polarization: -83.26 SS G_CDS: -2.28 Total: -85.54 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -62.86 4.43 -58.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068609707.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.067 kcal (2) G-P(sol) polarization free energy of solvation -62.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds