Wall clock time and date at job start Mon Mar 30 2020 01:35:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.46899 * 2 1 4 4 N 1.46904 * 109.46715 * 119.99984 * 2 1 3 5 5 C 1.46906 * 110.99535 * 201.61980 * 4 2 1 6 6 H 1.09000 * 109.47287 * 327.34510 * 5 4 2 7 7 C 1.52995 * 109.47007 * 87.34405 * 5 4 2 8 8 C 1.50699 * 109.46984 * 207.34367 * 5 4 2 9 9 H 1.08005 * 120.00301 * 0.02562 * 8 5 4 10 10 C 1.37873 * 120.00142 * 179.97438 * 8 5 4 11 11 N 1.31516 * 120.00027 * 0.02562 * 10 8 5 12 12 Si 1.86806 * 120.00243 * 179.97438 * 10 8 5 13 13 H 1.48498 * 109.46927 * 90.00368 * 12 10 8 14 14 H 1.48496 * 109.47301 * 210.00294 * 12 10 8 15 15 H 1.48493 * 109.47024 * 330.00723 * 12 10 8 16 16 C 1.50694 * 109.47094 * 239.99945 * 2 1 3 17 17 C 1.38233 * 120.00231 * 100.00265 * 16 2 1 18 18 C 1.38235 * 120.00284 * 179.97438 * 17 16 2 19 19 C 1.38228 * 119.99987 * 359.97438 * 18 17 16 20 20 C 1.50698 * 120.00136 * 179.97438 * 19 18 17 21 21 C 1.53001 * 109.47465 * 59.99629 * 20 19 18 22 22 C 1.52998 * 109.47449 * 180.02562 * 20 19 18 23 23 C 1.52995 * 109.47015 * 299.99829 * 20 19 18 24 24 C 1.38236 * 120.00136 * 359.97438 * 19 18 17 25 25 C 1.38234 * 119.99738 * 359.97438 * 24 19 18 26 26 H 1.09006 * 109.47307 * 55.85974 * 1 2 3 27 27 H 1.09005 * 109.47354 * 175.85889 * 1 2 3 28 28 H 1.09003 * 109.47184 * 295.86017 * 1 2 3 29 29 H 1.00897 * 110.99840 * 77.67196 * 4 2 1 30 30 H 1.09000 * 109.47300 * 60.27621 * 7 5 4 31 31 H 1.09006 * 109.46982 * 180.27432 * 7 5 4 32 32 H 1.08993 * 109.47652 * 300.27361 * 7 5 4 33 33 H 0.96998 * 120.00201 * 179.97438 * 11 10 8 34 34 H 1.08003 * 119.99702 * 0.25012 * 17 16 2 35 35 H 1.08004 * 119.99617 * 179.97438 * 18 17 16 36 36 H 1.09005 * 109.47082 * 60.00232 * 21 20 19 37 37 H 1.08992 * 109.47780 * 179.97438 * 21 20 19 38 38 H 1.08993 * 109.46943 * 300.00505 * 21 20 19 39 39 H 1.08994 * 109.47228 * 59.99488 * 22 20 19 40 40 H 1.09002 * 109.47404 * 180.02562 * 22 20 19 41 41 H 1.09005 * 109.46841 * 299.99611 * 22 20 19 42 42 H 1.09002 * 109.47150 * 59.99926 * 23 20 19 43 43 H 1.09002 * 109.47557 * 179.97438 * 23 20 19 44 44 H 1.09001 * 109.47369 * 299.99588 * 23 20 19 45 45 H 1.08003 * 120.00422 * 179.97438 * 24 19 18 46 46 H 1.08007 * 119.99634 * 179.97438 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0195 -0.6925 1.1995 5 6 3.3971 -0.2906 1.5139 6 1 3.9330 -0.0758 0.5894 7 6 3.3749 0.9614 2.3931 8 6 4.0912 -1.4083 2.2488 9 1 3.5620 -2.3257 2.4607 10 6 5.4020 -1.2602 2.6498 11 7 6.0465 -0.1433 2.3913 12 14 6.2621 -2.6454 3.5613 13 1 6.9234 -3.5459 2.5831 14 1 7.2821 -2.0762 4.4783 15 1 5.2646 -3.4152 4.3470 16 6 2.0323 -0.7104 -1.2304 17 6 2.4587 0.0194 -2.3242 18 6 2.9200 -0.6323 -3.4527 19 6 2.9553 -2.0137 -3.4872 20 6 3.4576 -2.7241 -4.7176 21 6 4.9052 -2.3104 -4.9903 22 6 3.3920 -4.2365 -4.4959 23 6 2.5851 -2.3467 -5.9163 24 6 2.5299 -2.7435 -2.3930 25 6 2.0696 -2.0918 -1.2641 26 1 -0.3634 0.5768 -0.8506 27 1 -0.3634 -1.0250 -0.0742 28 1 -0.3634 0.4483 0.9248 29 1 1.9504 -1.6934 1.0926 30 1 2.8433 0.7452 3.3198 31 1 4.3972 1.2624 2.6224 32 1 2.8687 1.7684 1.8636 33 1 6.9686 -0.0390 2.6737 34 1 2.4357 1.0988 -2.2954 35 1 3.2528 -0.0620 -4.3074 36 1 5.5269 -2.5793 -4.1362 37 1 5.2687 -2.8245 -5.8799 38 1 4.9515 -1.2330 -5.1484 39 1 2.3607 -4.5309 -4.3019 40 1 3.7558 -4.7504 -5.3857 41 1 4.0135 -4.5058 -3.6418 42 1 2.6314 -1.2692 -6.0745 43 1 2.9486 -2.8601 -6.8065 44 1 1.5538 -2.6415 -5.7222 45 1 2.5571 -3.8229 -2.4201 46 1 1.7368 -2.6621 -0.4094 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068609712.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:20 Heat of formation + Delta-G solvation = -12.857722 kcal Electronic energy + Delta-G solvation = -21915.765181 eV Core-core repulsion = 18996.566954 eV Total energy + Delta-G solvation = -2919.198227 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.98569 -38.72019 -36.71222 -34.89430 -32.51602 -31.99898 -29.75726 -28.82339 -28.19726 -28.08763 -27.22674 -24.52876 -23.27407 -22.33641 -21.21227 -19.98659 -18.64696 -17.59292 -16.94115 -16.24819 -16.03608 -15.63352 -15.33261 -15.14586 -14.95262 -14.58332 -14.31125 -14.19971 -14.03164 -13.55015 -13.50521 -13.25253 -13.11633 -12.84280 -12.79030 -12.69865 -12.54310 -12.44286 -12.34044 -12.21908 -12.13564 -11.93582 -11.83721 -11.63434 -11.43387 -11.32232 -10.87220 -10.57593 -9.76259 -9.37279 -9.03807 -8.12649 -6.26107 0.50382 0.55808 1.39568 1.40634 1.51203 2.40598 2.89235 3.16162 3.62919 3.71095 3.81865 3.95744 4.12825 4.15448 4.16789 4.39866 4.45679 4.53676 4.64838 4.66459 4.78861 4.82616 4.84581 4.90034 4.94280 5.00945 5.02735 5.04884 5.09680 5.10337 5.18466 5.21057 5.24309 5.27159 5.36429 5.38566 5.45728 5.49779 5.62446 5.66165 5.77311 5.79559 5.90309 6.18254 6.22704 6.48901 6.79193 7.02303 7.43779 8.93091 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.015396 B = 0.005466 C = 0.004538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.160692 B = 5121.115428 C = 6167.963365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.118 3.882 3 H 0.062 0.938 4 N -0.676 5.676 5 C 0.222 3.778 6 H -0.032 1.032 7 C -0.113 4.113 8 C -0.533 4.533 9 H 0.056 0.944 10 C 0.014 3.986 11 N -0.918 5.918 12 Si 0.958 3.042 13 H -0.278 1.278 14 H -0.282 1.282 15 H -0.267 1.267 16 C -0.115 4.115 17 C -0.129 4.129 18 C -0.119 4.119 19 C -0.081 4.081 20 C -0.028 4.028 21 C -0.138 4.138 22 C -0.143 4.143 23 C -0.132 4.132 24 C -0.127 4.127 25 C -0.123 4.123 26 H 0.067 0.933 27 H 0.055 0.945 28 H 0.061 0.939 29 H 0.332 0.668 30 H 0.028 0.972 31 H 0.055 0.945 32 H 0.020 0.980 33 H 0.261 0.739 34 H 0.123 0.877 35 H 0.135 0.865 36 H 0.038 0.962 37 H 0.076 0.924 38 H 0.056 0.944 39 H 0.061 0.939 40 H 0.073 0.927 41 H 0.048 0.952 42 H 0.057 0.943 43 H 0.073 0.927 44 H 0.053 0.947 45 H 0.136 0.864 46 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.346 -4.411 -15.990 18.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.008 3.992 3 H 0.080 0.920 4 N -0.307 5.307 5 C 0.113 3.887 6 H -0.014 1.014 7 C -0.172 4.172 8 C -0.572 4.572 9 H 0.074 0.926 10 C -0.185 4.185 11 N -0.557 5.557 12 Si 0.784 3.216 13 H -0.204 1.204 14 H -0.208 1.208 15 H -0.191 1.191 16 C -0.116 4.116 17 C -0.147 4.147 18 C -0.137 4.137 19 C -0.081 4.081 20 C -0.028 4.028 21 C -0.195 4.195 22 C -0.200 4.200 23 C -0.189 4.189 24 C -0.144 4.144 25 C -0.142 4.142 26 H 0.086 0.914 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.151 0.849 30 H 0.047 0.953 31 H 0.074 0.926 32 H 0.039 0.961 33 H 0.070 0.930 34 H 0.141 0.859 35 H 0.153 0.847 36 H 0.057 0.943 37 H 0.095 0.905 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.092 0.908 41 H 0.067 0.933 42 H 0.076 0.924 43 H 0.092 0.908 44 H 0.072 0.928 45 H 0.154 0.846 46 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -7.465 -3.870 -15.493 17.628 hybrid contribution 1.305 -0.754 0.231 1.525 sum -6.160 -4.624 -15.262 17.095 Atomic orbital electron populations 1.21657 0.92204 1.02048 1.01945 1.20651 0.96451 0.96618 0.85518 0.91974 1.60942 1.24019 1.11191 1.34561 1.18806 0.83734 0.93717 0.92409 1.01446 1.21557 1.00375 0.96788 0.98477 1.21567 0.97278 1.01085 1.37235 0.92556 1.25694 0.98044 0.98005 0.96745 1.70029 1.11230 1.26638 1.47804 0.85557 0.78280 0.79316 0.78497 1.20362 1.20791 1.19094 1.20830 0.99329 0.94664 0.96814 1.21195 0.99871 1.00018 0.93639 1.21111 1.00043 0.94377 0.98166 1.20045 0.98716 0.93547 0.95835 1.19533 0.95745 0.95298 0.92222 1.21890 0.94435 1.01626 1.01567 1.21951 1.02054 0.93852 1.02129 1.21845 0.98997 1.01755 0.96351 1.21320 0.99481 1.00665 0.92976 1.21019 1.00623 0.94142 0.98373 0.91364 0.92622 0.91958 0.84876 0.95295 0.92609 0.96138 0.92970 0.85913 0.84712 0.94260 0.90521 0.92517 0.91998 0.90801 0.93319 0.92411 0.90797 0.92776 0.84592 0.86611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.56 9.50 71.98 0.68 -2.88 16 2 C 0.12 4.35 2.67 44.17 0.12 4.47 16 3 H 0.06 2.45 7.16 -2.39 -0.02 2.43 16 4 N -0.68 -29.42 6.02 -477.16 -2.87 -32.29 16 5 C 0.22 11.64 2.40 44.17 0.11 11.74 16 6 H -0.03 -1.89 7.48 -2.39 -0.02 -1.91 16 7 C -0.11 -5.86 9.20 71.98 0.66 -5.20 16 8 C -0.53 -29.95 8.59 25.60 0.22 -29.73 16 9 H 0.06 3.10 7.58 -2.91 -0.02 3.08 16 10 C 0.01 0.80 5.30 84.65 0.45 1.25 16 11 N -0.92 -54.11 11.32 21.45 0.24 -53.87 16 12 Si 0.96 44.36 29.54 68.60 2.03 46.39 16 13 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 14 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 15 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 16 C -0.11 -4.08 4.44 -19.87 -0.09 -4.17 16 17 C -0.13 -4.20 9.67 22.27 0.22 -3.98 16 18 C -0.12 -3.41 8.71 22.27 0.19 -3.22 16 19 C -0.08 -2.24 4.76 -19.87 -0.09 -2.34 16 20 C -0.03 -0.59 0.85 -52.93 -0.05 -0.63 16 21 C -0.14 -2.86 8.29 71.98 0.60 -2.26 16 22 C -0.14 -2.70 7.13 71.98 0.51 -2.19 16 23 C -0.13 -2.25 8.28 71.98 0.60 -1.65 16 24 C -0.13 -3.84 8.98 22.27 0.20 -3.64 16 25 C -0.12 -4.24 9.16 22.27 0.20 -4.04 16 26 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 27 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 28 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.33 14.21 5.88 -89.70 -0.53 13.69 16 30 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.06 3.14 6.08 -2.38 -0.01 3.13 16 32 H 0.02 0.93 7.56 -2.39 -0.02 0.92 16 33 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 34 H 0.12 3.69 8.04 -2.91 -0.02 3.66 16 35 H 0.14 3.19 7.10 -2.91 -0.02 3.17 16 36 H 0.04 0.96 8.14 -2.38 -0.02 0.94 16 37 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.06 1.16 7.39 -2.39 -0.02 1.14 16 39 H 0.06 1.12 7.51 -2.39 -0.02 1.10 16 40 H 0.07 1.11 8.14 -2.39 -0.02 1.10 16 41 H 0.05 1.03 7.51 -2.38 -0.02 1.01 16 42 H 0.06 0.96 7.39 -2.39 -0.02 0.95 16 43 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 45 H 0.14 3.57 5.90 -2.91 -0.02 3.55 16 46 H 0.12 3.95 6.50 -2.91 -0.02 3.93 16 Total: -1.00 -62.46 356.79 4.33 -58.12 By element: Atomic # 1 Polarization: 29.71 SS G_CDS: 0.41 Total: 30.11 kcal Atomic # 6 Polarization: -52.99 SS G_CDS: 4.53 Total: -48.46 kcal Atomic # 7 Polarization: -83.53 SS G_CDS: -2.63 Total: -86.16 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -62.46 4.33 -58.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068609712.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.264 kcal (2) G-P(sol) polarization free energy of solvation -62.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds