Wall clock time and date at job start Mon Mar 30 2020 01:35:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1 7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.46872 * 59.99743 * 8 6 4 10 10 H 1.48503 * 109.47008 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.46914 * 299.99916 * 8 6 4 12 12 N 1.46902 * 109.47094 * 119.99508 * 2 1 3 13 13 C 1.46895 * 111.00561 * 275.00137 * 12 2 1 14 14 H 1.09006 * 109.46781 * 34.99707 * 13 12 2 15 15 C 1.52999 * 109.47271 * 275.00382 * 13 12 2 16 16 C 1.50703 * 109.47425 * 154.99759 * 13 12 2 17 17 C 1.38239 * 119.99550 * 39.73035 * 16 13 12 18 18 C 1.38230 * 119.99526 * 179.81161 * 17 16 13 19 19 C 1.38242 * 120.00170 * 0.39186 * 18 17 16 20 20 C 1.50701 * 119.99733 * 179.83366 * 19 18 17 21 21 C 1.52996 * 109.47150 * 240.02188 * 20 19 18 22 22 C 1.52994 * 109.47562 * 0.02562 * 20 19 18 23 23 C 1.53001 * 109.46622 * 120.02697 * 20 19 18 24 24 C 1.38229 * 119.99937 * 359.86387 * 19 18 17 25 25 C 1.38228 * 119.99947 * 220.00377 * 16 13 12 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 29 29 H 0.96999 * 120.00480 * 179.97438 * 7 6 4 30 30 H 1.00906 * 110.99706 * 38.96022 * 12 2 1 31 31 H 1.09001 * 109.47105 * 180.02562 * 15 13 12 32 32 H 1.09006 * 109.46667 * 299.99395 * 15 13 12 33 33 H 1.08993 * 109.47394 * 59.99401 * 15 13 12 34 34 H 1.07994 * 120.00190 * 359.97438 * 17 16 13 35 35 H 1.08002 * 119.99947 * 180.23130 * 18 17 16 36 36 H 1.09001 * 109.47014 * 60.00432 * 21 20 19 37 37 H 1.09003 * 109.47377 * 180.02562 * 21 20 19 38 38 H 1.08995 * 109.47656 * 300.00587 * 21 20 19 39 39 H 1.09007 * 109.47067 * 59.99819 * 22 20 19 40 40 H 1.08995 * 109.47328 * 179.97438 * 22 20 19 41 41 H 1.09003 * 109.47403 * 300.00228 * 22 20 19 42 42 H 1.09001 * 109.47273 * 59.99755 * 23 20 19 43 43 H 1.09003 * 109.46838 * 179.97438 * 23 20 19 44 44 H 1.08998 * 109.47380 * 299.99760 * 23 20 19 45 45 H 1.07997 * 120.00388 * 179.97438 * 24 19 18 46 46 H 1.07997 * 120.00173 * 359.97438 * 25 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.8259 -2.5203 -4.0076 10 1 1.8261 -0.4206 -5.2204 11 1 3.8064 -1.1209 -4.0080 12 7 2.0196 -0.6924 1.1995 13 6 2.0824 0.2226 2.3469 14 1 1.2576 0.9330 2.2907 15 6 3.4110 0.9810 2.3224 16 6 1.9785 -0.5675 3.6260 17 6 2.6282 -1.7822 3.7427 18 6 2.5361 -2.5051 4.9172 19 6 1.7877 -2.0173 5.9722 20 6 1.6843 -2.8074 7.2514 21 6 0.2180 -3.1504 7.5218 22 6 2.4943 -4.0986 7.1203 23 6 2.2355 -1.9749 8.4108 24 6 1.1337 -0.8053 5.8536 25 6 1.2290 -0.0805 4.6803 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 0.7089 1.1612 -3.4844 30 1 1.4495 -1.4979 1.4101 31 1 3.4578 1.6597 3.1741 32 1 4.2359 0.2706 2.3787 33 1 3.4862 1.5525 1.3973 34 1 3.2099 -2.1649 2.9172 35 1 3.0468 -3.4523 5.0098 36 1 -0.1747 -3.7434 6.6958 37 1 0.1431 -3.7214 8.4473 38 1 -0.3592 -2.2305 7.6152 39 1 3.5390 -3.8542 6.9277 40 1 2.4199 -4.6698 8.0457 41 1 2.1017 -4.6917 6.2943 42 1 1.6584 -1.0550 8.5042 43 1 2.1603 -2.5462 9.3361 44 1 3.2801 -1.7305 8.2182 45 1 0.5487 -0.4244 6.6776 46 1 0.7182 0.8665 4.5877 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068609717.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:23 Heat of formation + Delta-G solvation = 1.104468 kcal Electronic energy + Delta-G solvation = -21430.249101 eV Core-core repulsion = 18511.656321 eV Total energy + Delta-G solvation = -2918.592781 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.88726 -37.39832 -35.51888 -33.03505 -30.95399 -30.76908 -28.46152 -27.49787 -27.39771 -26.91391 -25.11160 -23.38675 -22.15395 -20.79479 -19.61439 -19.02523 -16.87810 -15.99282 -15.40799 -14.92885 -14.58055 -14.39811 -14.38691 -13.92437 -13.48008 -13.28822 -13.16934 -12.94636 -12.66633 -12.37782 -12.10154 -11.98494 -11.84721 -11.70662 -11.42994 -11.37929 -11.26837 -11.08315 -10.96410 -10.87961 -10.71766 -10.52966 -10.32972 -10.30896 -10.04341 -9.73815 -8.97402 -8.66076 -8.32605 -8.25499 -7.21380 -5.95369 -3.98401 1.57590 1.66117 3.36382 3.40103 3.43573 3.98089 4.46474 4.52602 4.65300 4.87307 5.06628 5.16361 5.21539 5.26146 5.35300 5.36525 5.43119 5.45015 5.60377 5.68463 5.70871 5.71346 5.82751 5.88372 5.90692 5.93237 6.05073 6.14439 6.15682 6.24994 6.28523 6.40112 6.52115 6.68615 6.72973 6.80540 6.83155 6.88012 6.97308 7.15422 7.26804 7.43523 7.77639 7.92633 8.31927 8.58347 8.66029 9.08604 9.66727 11.11706 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.031138 B = 0.003520 C = 0.003423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.000305 B = 7953.648040 C = 8178.888203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.212 3.788 3 H 0.035 0.965 4 C -0.494 4.494 5 H 0.062 0.938 6 C 0.055 3.945 7 N -0.898 5.898 8 Si 0.897 3.103 9 H -0.278 1.278 10 H -0.289 1.289 11 H -0.277 1.277 12 N -0.676 5.676 13 C 0.120 3.880 14 H 0.042 0.958 15 C -0.129 4.129 16 C -0.077 4.077 17 C -0.097 4.097 18 C -0.124 4.124 19 C -0.083 4.083 20 C -0.028 4.028 21 C -0.138 4.138 22 C -0.143 4.143 23 C -0.137 4.137 24 C -0.119 4.119 25 C -0.117 4.117 26 H 0.027 0.973 27 H 0.088 0.912 28 H 0.004 0.996 29 H 0.260 0.740 30 H 0.327 0.673 31 H 0.042 0.958 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.132 0.868 35 H 0.121 0.879 36 H 0.056 0.944 37 H 0.054 0.946 38 H 0.056 0.944 39 H 0.058 0.942 40 H 0.054 0.946 41 H 0.059 0.941 42 H 0.056 0.944 43 H 0.054 0.946 44 H 0.056 0.944 45 H 0.114 0.886 46 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.917 -5.157 20.280 20.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.104 3.896 3 H 0.053 0.947 4 C -0.532 4.532 5 H 0.080 0.920 6 C -0.145 4.145 7 N -0.538 5.538 8 Si 0.725 3.275 9 H -0.204 1.204 10 H -0.215 1.215 11 H -0.203 1.203 12 N -0.306 5.306 13 C 0.010 3.990 14 H 0.059 0.941 15 C -0.187 4.187 16 C -0.078 4.078 17 C -0.115 4.115 18 C -0.142 4.142 19 C -0.083 4.083 20 C -0.028 4.028 21 C -0.195 4.195 22 C -0.200 4.200 23 C -0.194 4.194 24 C -0.137 4.137 25 C -0.135 4.135 26 H 0.046 0.954 27 H 0.107 0.893 28 H 0.023 0.977 29 H 0.069 0.931 30 H 0.144 0.856 31 H 0.061 0.939 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.150 0.850 35 H 0.139 0.861 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.078 0.922 42 H 0.075 0.925 43 H 0.073 0.927 44 H 0.075 0.925 45 H 0.132 0.868 46 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 1.509 -4.949 19.956 20.616 hybrid contribution -0.792 -0.227 -0.730 1.101 sum 0.717 -5.177 19.226 19.924 Atomic orbital electron populations 1.22436 1.00856 0.99137 1.00380 1.19198 0.89440 0.94503 0.86468 0.94727 1.21117 1.30135 1.12382 0.89607 0.92024 1.24946 0.95374 0.95219 0.98999 1.69872 1.37336 1.23249 1.23379 0.86579 0.79165 0.79610 0.82114 1.20409 1.21517 1.20306 1.60960 1.58013 1.08732 1.02941 1.20415 0.97300 0.93653 0.87662 0.94055 1.21732 0.96857 0.99293 1.00799 1.20197 0.96446 0.95392 0.95730 1.21148 0.98760 0.94176 0.97414 1.21163 0.99745 1.00125 0.93193 1.19701 0.98315 0.95230 0.95024 1.19457 0.95981 0.94669 0.92694 1.21882 0.94734 1.01547 1.01328 1.21954 0.99995 0.96413 1.01685 1.21879 1.01159 0.99544 0.96839 1.20816 1.00421 0.94969 0.97517 1.21027 0.99354 0.99835 0.93303 0.95434 0.89296 0.97726 0.93064 0.85618 0.93861 0.92429 0.92007 0.84995 0.86066 0.92451 0.92648 0.92528 0.92258 0.92681 0.92184 0.92537 0.92655 0.92529 0.86801 0.86576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.13 8.92 37.16 0.33 -3.80 16 2 C 0.21 5.32 2.38 -68.87 -0.16 5.16 16 3 H 0.03 0.95 7.11 -51.93 -0.37 0.59 16 4 C -0.49 -13.69 8.84 -34.44 -0.30 -14.00 16 5 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 6 C 0.05 1.53 5.30 -17.82 -0.09 1.44 16 7 N -0.90 -25.87 11.32 55.43 0.63 -25.24 16 8 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 16 9 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 12 N -0.68 -14.32 5.42 -102.17 -0.55 -14.88 16 13 C 0.12 2.19 2.63 -68.87 -0.18 2.01 16 14 H 0.04 0.80 6.98 -51.93 -0.36 0.44 16 15 C -0.13 -2.24 9.38 37.16 0.35 -1.89 16 16 C -0.08 -1.23 4.72 -104.62 -0.49 -1.72 16 17 C -0.10 -1.46 9.00 -39.58 -0.36 -1.82 16 18 C -0.12 -1.62 8.98 -39.58 -0.36 -1.98 16 19 C -0.08 -1.00 4.76 -104.62 -0.50 -1.50 16 20 C -0.03 -0.27 0.85 -155.66 -0.13 -0.40 16 21 C -0.14 -1.22 8.29 37.16 0.31 -0.92 16 22 C -0.14 -1.24 7.13 37.15 0.26 -0.97 16 23 C -0.14 -1.17 8.29 37.16 0.31 -0.87 16 24 C -0.12 -1.50 8.71 -39.58 -0.34 -1.84 16 25 C -0.12 -1.67 9.67 -39.58 -0.38 -2.05 16 26 H 0.03 0.65 8.13 -51.93 -0.42 0.22 16 27 H 0.09 2.40 6.07 -51.93 -0.32 2.08 16 28 H 0.00 0.08 7.43 -51.93 -0.39 -0.30 16 29 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 30 H 0.33 6.78 7.72 -39.29 -0.30 6.48 16 31 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.06 1.18 7.43 -51.93 -0.39 0.79 16 34 H 0.13 2.08 7.71 -52.49 -0.40 1.67 16 35 H 0.12 1.37 5.90 -52.49 -0.31 1.06 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.06 0.50 7.39 -51.93 -0.38 0.11 16 39 H 0.06 0.51 7.51 -51.93 -0.39 0.12 16 40 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 41 H 0.06 0.53 7.51 -51.93 -0.39 0.14 16 42 H 0.06 0.48 7.39 -51.93 -0.38 0.09 16 43 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 45 H 0.11 1.21 7.10 -52.49 -0.37 0.84 16 46 H 0.12 1.54 8.04 -52.49 -0.42 1.12 16 LS Contribution 357.98 15.07 5.39 5.39 Total: -1.00 -28.31 357.98 -9.40 -37.72 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -8.10 Total: 5.54 kcal Atomic # 6 Polarization: -23.40 SS G_CDS: -1.75 Total: -25.15 kcal Atomic # 7 Polarization: -40.19 SS G_CDS: 0.07 Total: -40.12 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -28.31 -9.40 -37.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068609717.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.820 kcal (2) G-P(sol) polarization free energy of solvation -28.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds