Wall clock time and date at job start Mon Mar 30 2020 01:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1 7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.46872 * 59.99743 * 8 6 4 10 10 H 1.48503 * 109.47008 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.46914 * 299.99916 * 8 6 4 12 12 N 1.46902 * 109.47094 * 119.99508 * 2 1 3 13 13 C 1.46895 * 111.00561 * 275.00137 * 12 2 1 14 14 H 1.09006 * 109.46781 * 34.99707 * 13 12 2 15 15 C 1.52999 * 109.47271 * 275.00382 * 13 12 2 16 16 C 1.50703 * 109.47425 * 154.99759 * 13 12 2 17 17 C 1.38239 * 119.99550 * 39.73035 * 16 13 12 18 18 C 1.38230 * 119.99526 * 179.81161 * 17 16 13 19 19 C 1.38242 * 120.00170 * 0.39186 * 18 17 16 20 20 C 1.50701 * 119.99733 * 179.83366 * 19 18 17 21 21 C 1.52996 * 109.47150 * 240.02188 * 20 19 18 22 22 C 1.52994 * 109.47562 * 0.02562 * 20 19 18 23 23 C 1.53001 * 109.46622 * 120.02697 * 20 19 18 24 24 C 1.38229 * 119.99937 * 359.86387 * 19 18 17 25 25 C 1.38228 * 119.99947 * 220.00377 * 16 13 12 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 29 29 H 0.96999 * 120.00480 * 179.97438 * 7 6 4 30 30 H 1.00906 * 110.99706 * 38.96022 * 12 2 1 31 31 H 1.09001 * 109.47105 * 180.02562 * 15 13 12 32 32 H 1.09006 * 109.46667 * 299.99395 * 15 13 12 33 33 H 1.08993 * 109.47394 * 59.99401 * 15 13 12 34 34 H 1.07994 * 120.00190 * 359.97438 * 17 16 13 35 35 H 1.08002 * 119.99947 * 180.23130 * 18 17 16 36 36 H 1.09001 * 109.47014 * 60.00432 * 21 20 19 37 37 H 1.09003 * 109.47377 * 180.02562 * 21 20 19 38 38 H 1.08995 * 109.47656 * 300.00587 * 21 20 19 39 39 H 1.09007 * 109.47067 * 59.99819 * 22 20 19 40 40 H 1.08995 * 109.47328 * 179.97438 * 22 20 19 41 41 H 1.09003 * 109.47403 * 300.00228 * 22 20 19 42 42 H 1.09001 * 109.47273 * 59.99755 * 23 20 19 43 43 H 1.09003 * 109.46838 * 179.97438 * 23 20 19 44 44 H 1.08998 * 109.47380 * 299.99760 * 23 20 19 45 45 H 1.07997 * 120.00388 * 179.97438 * 24 19 18 46 46 H 1.07997 * 120.00173 * 359.97438 * 25 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.8259 -2.5203 -4.0076 10 1 1.8261 -0.4206 -5.2204 11 1 3.8064 -1.1209 -4.0080 12 7 2.0196 -0.6924 1.1995 13 6 2.0824 0.2226 2.3469 14 1 1.2576 0.9330 2.2907 15 6 3.4110 0.9810 2.3224 16 6 1.9785 -0.5675 3.6260 17 6 2.6282 -1.7822 3.7427 18 6 2.5361 -2.5051 4.9172 19 6 1.7877 -2.0173 5.9722 20 6 1.6843 -2.8074 7.2514 21 6 0.2180 -3.1504 7.5218 22 6 2.4943 -4.0986 7.1203 23 6 2.2355 -1.9749 8.4108 24 6 1.1337 -0.8053 5.8536 25 6 1.2290 -0.0805 4.6803 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 0.7089 1.1612 -3.4844 30 1 1.4495 -1.4979 1.4101 31 1 3.4578 1.6597 3.1741 32 1 4.2359 0.2706 2.3787 33 1 3.4862 1.5525 1.3973 34 1 3.2099 -2.1649 2.9172 35 1 3.0468 -3.4523 5.0098 36 1 -0.1747 -3.7434 6.6958 37 1 0.1431 -3.7214 8.4473 38 1 -0.3592 -2.2305 7.6152 39 1 3.5390 -3.8542 6.9277 40 1 2.4199 -4.6698 8.0457 41 1 2.1017 -4.6917 6.2943 42 1 1.6584 -1.0550 8.5042 43 1 2.1603 -2.5462 9.3361 44 1 3.2801 -1.7305 8.2182 45 1 0.5487 -0.4244 6.6776 46 1 0.7182 0.8665 4.5877 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068609717.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:22 Heat of formation + Delta-G solvation = -12.474624 kcal Electronic energy + Delta-G solvation = -21430.837935 eV Core-core repulsion = 18511.656321 eV Total energy + Delta-G solvation = -2919.181614 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.92734 -38.69624 -36.88312 -34.83579 -32.55335 -31.95936 -29.68836 -28.72460 -28.16565 -28.05104 -27.23943 -24.62097 -23.25205 -22.35544 -21.20033 -19.97112 -18.59108 -17.40889 -16.87570 -16.48983 -16.00438 -15.53581 -15.17137 -15.14255 -14.84915 -14.58130 -14.41652 -14.15011 -13.89039 -13.77107 -13.41943 -13.21883 -12.99841 -12.88553 -12.78940 -12.73654 -12.57414 -12.48376 -12.36471 -12.22331 -12.19754 -11.95618 -11.76904 -11.72127 -11.31228 -11.27373 -11.02922 -10.47283 -9.73562 -9.35966 -8.97948 -8.08810 -6.19798 0.48744 0.58477 1.43317 1.45138 1.52813 2.44492 2.90325 3.19467 3.58461 3.69631 3.88790 3.92709 4.17036 4.18038 4.26944 4.42098 4.46443 4.57133 4.65280 4.69539 4.73062 4.82981 4.83368 4.86852 4.92521 4.94449 4.97759 5.05256 5.07496 5.09484 5.14366 5.22342 5.25015 5.29777 5.36425 5.41169 5.43893 5.48983 5.63949 5.69160 5.76914 5.81553 5.89404 6.19090 6.29008 6.66733 6.83194 6.95099 7.50021 8.96754 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.031138 B = 0.003520 C = 0.003423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.000305 B = 7953.648040 C = 8178.888203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.218 3.782 3 H 0.004 0.996 4 C -0.514 4.514 5 H 0.055 0.945 6 C 0.008 3.992 7 N -0.924 5.924 8 Si 0.960 3.040 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.675 5.675 13 C 0.123 3.877 14 H 0.029 0.971 15 C -0.123 4.123 16 C -0.095 4.095 17 C -0.108 4.108 18 C -0.126 4.126 19 C -0.077 4.077 20 C -0.028 4.028 21 C -0.137 4.137 22 C -0.144 4.144 23 C -0.136 4.136 24 C -0.117 4.117 25 C -0.123 4.123 26 H 0.029 0.971 27 H 0.063 0.937 28 H 0.021 0.979 29 H 0.261 0.739 30 H 0.329 0.671 31 H 0.067 0.933 32 H 0.056 0.944 33 H 0.036 0.964 34 H 0.119 0.881 35 H 0.138 0.862 36 H 0.047 0.953 37 H 0.072 0.928 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.070 0.930 41 H 0.055 0.945 42 H 0.057 0.943 43 H 0.071 0.929 44 H 0.050 0.950 45 H 0.137 0.863 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.923 -6.364 22.287 23.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.110 3.890 3 H 0.022 0.978 4 C -0.553 4.553 5 H 0.073 0.927 6 C -0.190 4.190 7 N -0.564 5.564 8 Si 0.786 3.214 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.199 1.199 12 N -0.305 5.305 13 C 0.013 3.987 14 H 0.047 0.953 15 C -0.181 4.181 16 C -0.095 4.095 17 C -0.127 4.127 18 C -0.144 4.144 19 C -0.077 4.077 20 C -0.028 4.028 21 C -0.194 4.194 22 C -0.201 4.201 23 C -0.193 4.193 24 C -0.135 4.135 25 C -0.142 4.142 26 H 0.048 0.952 27 H 0.081 0.919 28 H 0.040 0.960 29 H 0.070 0.930 30 H 0.146 0.854 31 H 0.086 0.914 32 H 0.075 0.925 33 H 0.055 0.945 34 H 0.137 0.863 35 H 0.156 0.844 36 H 0.066 0.934 37 H 0.091 0.909 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.089 0.911 41 H 0.074 0.926 42 H 0.076 0.924 43 H 0.090 0.910 44 H 0.069 0.931 45 H 0.155 0.845 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 1.520 -6.161 21.980 22.877 hybrid contribution -0.796 0.142 -1.244 1.484 sum 0.724 -6.019 20.736 21.604 Atomic orbital electron populations 1.22247 1.00380 0.99006 0.99875 1.18935 0.89658 0.92879 0.87564 0.97766 1.21420 1.30376 1.12450 0.91028 0.92695 1.25719 0.95480 0.95885 1.01883 1.70002 1.38069 1.24331 1.24005 0.85576 0.78658 0.78664 0.78478 1.19673 1.21035 1.19872 1.60833 1.57555 1.09066 1.03024 1.20380 0.97112 0.93252 0.87958 0.95326 1.21670 0.96525 0.99330 1.00526 1.19958 0.98530 0.95904 0.95104 1.21098 0.99163 0.94360 0.98038 1.21357 0.99837 1.00537 0.92643 1.20074 0.96770 0.95079 0.95782 1.19537 0.96829 0.94854 0.91615 1.21882 0.93958 1.01746 1.01828 1.21962 0.99679 0.96059 1.02410 1.21871 1.00695 0.99698 0.97005 1.21074 1.00173 0.94826 0.97410 1.21157 0.99129 1.00422 0.93492 0.95220 0.91865 0.96028 0.93032 0.85366 0.91421 0.92467 0.94477 0.86322 0.84442 0.93400 0.90920 0.92391 0.92379 0.91077 0.92624 0.92354 0.90981 0.93106 0.84508 0.85907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.76 8.92 71.98 0.64 -7.12 16 2 C 0.22 11.31 2.38 44.17 0.11 11.41 16 3 H 0.00 0.25 7.11 -2.39 -0.02 0.24 16 4 C -0.51 -29.10 8.84 25.60 0.23 -28.87 16 5 H 0.05 3.11 7.81 -2.91 -0.02 3.09 16 6 C 0.01 0.47 5.30 84.66 0.45 0.92 16 7 N -0.92 -54.15 11.32 21.45 0.24 -53.91 16 8 Si 0.96 44.65 29.54 68.60 2.03 46.67 16 9 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 10 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 11 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 12 N -0.67 -29.30 5.42 -477.16 -2.59 -31.88 16 13 C 0.12 4.57 2.63 44.17 0.12 4.68 16 14 H 0.03 1.14 6.98 -2.38 -0.02 1.12 16 15 C -0.12 -4.35 9.38 71.98 0.68 -3.67 16 16 C -0.09 -2.98 4.72 -19.87 -0.09 -3.07 16 17 C -0.11 -3.23 9.00 22.27 0.20 -3.03 16 18 C -0.13 -3.11 8.98 22.27 0.20 -2.91 16 19 C -0.08 -1.69 4.76 -19.87 -0.09 -1.79 16 20 C -0.03 -0.46 0.85 -52.93 -0.05 -0.51 16 21 C -0.14 -2.02 8.29 71.98 0.60 -1.43 16 22 C -0.14 -2.10 7.13 71.98 0.51 -1.58 16 23 C -0.14 -1.89 8.29 71.98 0.60 -1.29 16 24 C -0.12 -2.68 8.71 22.27 0.19 -2.49 16 25 C -0.12 -3.38 9.67 22.27 0.22 -3.16 16 26 H 0.03 1.41 8.13 -2.39 -0.02 1.39 16 27 H 0.06 3.49 6.07 -2.39 -0.01 3.48 16 28 H 0.02 0.95 7.43 -2.38 -0.02 0.94 16 29 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 30 H 0.33 13.91 7.72 -89.69 -0.69 13.22 16 31 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.06 1.99 8.14 -2.38 -0.02 1.98 16 33 H 0.04 1.46 7.43 -2.39 -0.02 1.44 16 34 H 0.12 3.80 7.71 -2.91 -0.02 3.78 16 35 H 0.14 2.88 5.90 -2.91 -0.02 2.86 16 36 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.07 0.83 8.14 -2.39 -0.02 0.82 16 38 H 0.06 0.84 7.39 -2.39 -0.02 0.82 16 39 H 0.06 0.86 7.51 -2.38 -0.02 0.84 16 40 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.05 0.86 7.51 -2.39 -0.02 0.84 16 42 H 0.06 0.79 7.39 -2.39 -0.02 0.78 16 43 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 44 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 45 H 0.14 2.49 7.10 -2.91 -0.02 2.47 16 46 H 0.12 3.12 8.04 -2.91 -0.02 3.09 16 Total: -1.00 -60.92 357.98 4.42 -56.50 By element: Atomic # 1 Polarization: 26.31 SS G_CDS: 0.24 Total: 26.55 kcal Atomic # 6 Polarization: -48.42 SS G_CDS: 4.50 Total: -43.92 kcal Atomic # 7 Polarization: -83.45 SS G_CDS: -2.34 Total: -85.79 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.67 kcal Total: -60.92 4.42 -56.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068609717.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.021 kcal (2) G-P(sol) polarization free energy of solvation -60.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds