Wall clock time and date at job start Mon Mar 30 2020 01:29:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47255 * 2 1 4 4 C 1.50706 * 109.47030 * 120.00319 * 2 1 3 5 5 C 1.38234 * 120.00196 * 120.00088 * 4 2 1 6 6 C 1.38235 * 119.99814 * 179.97438 * 5 4 2 7 7 C 1.38230 * 120.00326 * 359.97438 * 6 5 4 8 8 C 1.50696 * 120.00328 * 179.97438 * 7 6 5 9 9 H 1.09002 * 109.46786 * 339.99822 * 8 7 6 10 10 C 1.52995 * 109.47341 * 100.00049 * 8 7 6 11 11 N 1.46899 * 109.47465 * 220.00330 * 8 7 6 12 12 C 1.46897 * 111.00379 * 154.99949 * 11 8 7 13 13 C 1.52997 * 109.47291 * 180.02562 * 12 11 8 14 14 C 1.52997 * 109.47359 * 179.97438 * 13 12 11 15 15 C 1.50700 * 109.47514 * 179.97438 * 14 13 12 16 16 H 1.08003 * 119.99672 * 0.02562 * 15 14 13 17 17 C 1.37873 * 120.00052 * 179.97438 * 15 14 13 18 18 N 1.31510 * 120.00351 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99919 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.46987 * 89.99838 * 19 17 15 21 21 H 1.48498 * 109.47221 * 210.00075 * 19 17 15 22 22 H 1.48502 * 109.47002 * 330.00440 * 19 17 15 23 23 C 1.38235 * 119.99899 * 359.95697 * 7 6 5 24 24 C 1.38234 * 120.00205 * 0.02562 * 23 7 6 25 25 H 1.08994 * 109.47514 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47334 * 299.99945 * 1 2 3 27 27 H 1.09001 * 109.47441 * 59.99583 * 1 2 3 28 28 H 1.08995 * 109.46790 * 239.99929 * 2 1 3 29 29 H 1.08994 * 109.47197 * 179.97438 * 3 2 1 30 30 H 1.08991 * 109.46972 * 300.00052 * 3 2 1 31 31 H 1.09004 * 109.47360 * 60.00072 * 3 2 1 32 32 H 1.08000 * 119.99516 * 0.24808 * 5 4 2 33 33 H 1.08000 * 119.99297 * 179.97438 * 6 5 4 34 34 H 1.09001 * 109.47531 * 180.02562 * 10 8 7 35 35 H 1.08998 * 109.46960 * 300.00217 * 10 8 7 36 36 H 1.09002 * 109.47366 * 60.00128 * 10 8 7 37 37 H 1.00905 * 110.99983 * 278.95743 * 11 8 7 38 38 H 1.09001 * 109.46759 * 299.99631 * 12 11 8 39 39 H 1.08992 * 109.47226 * 59.99690 * 12 11 8 40 40 H 1.09001 * 109.46861 * 299.99499 * 13 12 11 41 41 H 1.09006 * 109.47196 * 59.99642 * 13 12 11 42 42 H 1.09001 * 109.47376 * 299.99775 * 14 13 12 43 43 H 1.09006 * 109.47124 * 59.99763 * 14 13 12 44 44 H 0.96995 * 120.00442 * 179.97438 * 18 17 15 45 45 H 1.07999 * 120.00043 * 179.97438 * 23 7 6 46 46 H 1.07997 * 120.00455 * 179.97438 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2305 5 6 2.8270 -1.8344 1.1036 6 6 3.2882 -2.4858 2.2323 7 6 2.9551 -2.0129 3.4878 8 6 3.4573 -2.7233 4.7183 9 1 3.7458 -3.7416 4.4575 10 6 4.6699 -1.9774 5.2787 11 7 2.3939 -2.7599 5.7311 12 6 2.5830 -3.8881 6.6526 13 6 1.4584 -3.8933 7.6900 14 6 1.6550 -5.0688 8.6494 15 6 0.5477 -5.0736 9.6716 16 1 -0.2198 -4.3144 9.6398 17 6 0.5138 -6.0478 10.6467 18 7 1.4481 -6.9726 10.6850 19 14 -0.8591 -6.0541 11.9133 20 1 -1.9937 -6.8691 11.4095 21 1 -0.3575 -6.6359 13.1841 22 1 -1.3178 -4.6622 12.1531 23 6 2.1615 -0.8882 3.6147 24 6 1.7006 -0.2366 2.4860 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8932 -0.5138 -0.8900 29 1 3.1299 1.4424 0.0005 30 1 1.6767 1.9562 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 3.0912 -2.2010 0.1227 33 1 3.9088 -3.3641 2.1332 34 1 5.0334 -2.4914 6.1684 35 1 5.4589 -1.9503 4.5272 36 1 4.3814 -0.9591 5.5394 37 1 2.3435 -1.8866 6.2341 38 1 2.5636 -4.8225 6.0916 39 1 3.5435 -3.7876 7.1578 40 1 1.4774 -2.9590 8.2510 41 1 0.4980 -3.9942 7.1843 42 1 1.6358 -6.0030 8.0882 43 1 2.6154 -4.9684 9.1551 44 1 1.4244 -7.6577 11.3712 45 1 1.9009 -0.5190 4.5956 46 1 1.0803 0.6419 2.5851 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071089290.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:52 Heat of formation + Delta-G solvation = -13.926852 kcal Electronic energy + Delta-G solvation = -20413.531223 eV Core-core repulsion = 17494.286635 eV Total energy + Delta-G solvation = -2919.244588 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.85588 -37.37185 -35.32974 -33.72966 -31.99934 -30.92322 -29.80130 -28.43681 -27.39074 -25.91317 -23.95550 -22.99908 -22.37081 -20.88650 -20.21708 -19.76872 -16.76488 -16.20848 -15.67270 -15.31503 -15.03242 -14.57502 -14.37765 -14.23278 -13.88638 -13.74753 -13.54143 -13.19565 -13.03181 -12.80812 -12.56099 -12.26441 -12.15029 -11.87071 -11.66168 -11.42920 -11.35459 -11.27920 -11.15828 -10.82661 -10.76728 -10.66753 -10.54794 -10.43705 -9.67613 -9.32102 -9.03816 -8.88392 -8.50693 -8.32059 -8.12117 -5.97250 -3.99182 1.35265 1.44273 3.34047 3.39906 3.43599 3.73813 4.38636 4.47444 4.51017 4.60108 4.85671 4.95391 4.97593 5.01117 5.18666 5.21412 5.27476 5.36394 5.38541 5.44240 5.46666 5.57480 5.65443 5.66370 5.72769 5.73757 5.88434 5.92969 5.96106 5.99330 6.03230 6.07882 6.13414 6.35357 6.45946 6.60438 6.62756 6.75484 6.83922 7.02397 7.16588 7.37992 7.64044 7.71393 7.86588 8.03371 8.46798 9.08060 9.64671 11.14237 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.028539 B = 0.002646 C = 0.002517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.876446 B =10580.411074 C =11123.637396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.056 4.056 3 C -0.143 4.143 4 C -0.086 4.086 5 C -0.119 4.119 6 C -0.116 4.116 7 C -0.063 4.063 8 C 0.119 3.881 9 H 0.084 0.916 10 C -0.176 4.176 11 N -0.682 5.682 12 C 0.060 3.940 13 C -0.107 4.107 14 C 0.022 3.978 15 C -0.518 4.518 16 H 0.055 0.945 17 C 0.055 3.945 18 N -0.897 5.897 19 Si 0.892 3.108 20 H -0.280 1.280 21 H -0.287 1.287 22 H -0.274 1.274 23 C -0.095 4.095 24 C -0.116 4.116 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.074 0.926 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.117 0.883 33 H 0.118 0.882 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.057 0.943 37 H 0.337 0.663 38 H 0.066 0.934 39 H 0.025 0.975 40 H 0.044 0.956 41 H 0.055 0.945 42 H 0.016 0.984 43 H 0.013 0.987 44 H 0.260 0.740 45 H 0.121 0.879 46 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.504 15.005 -21.541 26.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.074 4.074 3 C -0.201 4.201 4 C -0.086 4.086 5 C -0.138 4.138 6 C -0.134 4.134 7 C -0.064 4.064 8 C 0.008 3.992 9 H 0.102 0.898 10 C -0.235 4.235 11 N -0.313 5.313 12 C -0.069 4.069 13 C -0.145 4.145 14 C -0.016 4.016 15 C -0.556 4.556 16 H 0.073 0.927 17 C -0.146 4.146 18 N -0.536 5.536 19 Si 0.720 3.280 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.199 1.199 23 C -0.113 4.113 24 C -0.134 4.134 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.092 0.908 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.135 0.865 33 H 0.136 0.864 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.155 0.845 38 H 0.085 0.915 39 H 0.044 0.956 40 H 0.063 0.937 41 H 0.074 0.926 42 H 0.034 0.966 43 H 0.032 0.968 44 H 0.069 0.931 45 H 0.139 0.861 46 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 4.115 14.501 -21.829 26.527 hybrid contribution 0.054 0.119 1.326 1.332 sum 4.169 14.620 -20.503 25.525 Atomic orbital electron populations 1.21858 0.94392 1.02126 1.01790 1.20100 0.95939 0.95896 0.95470 1.21851 1.01130 0.95281 1.01803 1.19782 0.98312 0.95989 0.94517 1.20939 0.98724 0.95865 0.98224 1.20965 1.00546 0.99928 0.91967 1.19826 0.97264 0.95298 0.94019 1.20462 0.89621 0.98604 0.90476 0.89786 1.22475 0.98775 1.00828 1.01454 1.60670 1.45698 1.07290 1.17598 1.22157 0.98302 0.92927 0.93491 1.21618 0.96703 1.00501 0.95635 1.19064 0.96938 0.92344 0.93209 1.21260 1.10220 1.11856 1.12289 0.92688 1.25032 0.96048 0.95612 0.97878 1.69963 1.33636 1.15408 1.34640 0.86596 0.82287 0.78201 0.80930 1.20657 1.21270 1.19895 1.20903 0.96890 0.95115 0.98417 1.20920 1.00445 1.00083 0.91960 0.92458 0.92391 0.92599 0.90762 0.92641 0.92581 0.92439 0.86546 0.86384 0.92045 0.92204 0.92380 0.84467 0.91502 0.95644 0.93702 0.92573 0.96602 0.96831 0.93057 0.86149 0.86516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 9.01 37.16 0.33 -0.77 16 2 C -0.06 -0.44 3.09 -91.77 -0.28 -0.73 16 3 C -0.14 -1.01 9.00 37.16 0.33 -0.67 16 4 C -0.09 -0.87 4.78 -104.62 -0.50 -1.37 16 5 C -0.12 -1.24 9.67 -39.58 -0.38 -1.62 16 6 C -0.12 -1.30 9.67 -39.59 -0.38 -1.69 16 7 C -0.06 -0.78 4.96 -104.63 -0.52 -1.29 16 8 C 0.12 1.50 2.79 -68.87 -0.19 1.31 16 9 H 0.08 1.09 7.66 -51.93 -0.40 0.69 16 10 C -0.18 -1.96 9.14 37.15 0.34 -1.62 16 11 N -0.68 -10.04 5.70 -107.96 -0.62 -10.66 16 12 C 0.06 1.04 5.48 -3.83 -0.02 1.02 16 13 C -0.11 -2.24 5.41 -26.73 -0.14 -2.38 16 14 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 15 C -0.52 -14.96 9.11 -34.44 -0.31 -15.27 16 16 H 0.05 1.55 7.74 -52.48 -0.41 1.14 16 17 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 18 N -0.90 -27.35 13.29 55.43 0.74 -26.62 16 19 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 20 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 23 C -0.09 -1.13 9.32 -39.58 -0.37 -1.49 16 24 C -0.12 -1.24 8.71 -39.58 -0.34 -1.59 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.45 7.40 -51.93 -0.38 0.07 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.07 0.55 7.88 -51.93 -0.41 0.14 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.41 7.38 -51.93 -0.38 0.02 16 32 H 0.12 0.98 7.95 -52.49 -0.42 0.57 16 33 H 0.12 1.16 8.04 -52.49 -0.42 0.74 16 34 H 0.06 0.72 7.45 -51.93 -0.39 0.33 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.62 8.13 -51.93 -0.42 0.19 16 37 H 0.34 4.63 7.82 -39.29 -0.31 4.33 16 38 H 0.07 1.20 8.06 -51.93 -0.42 0.78 16 39 H 0.03 0.44 7.44 -51.93 -0.39 0.05 16 40 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 41 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 45 H 0.12 1.37 7.25 -52.49 -0.38 0.98 16 46 H 0.12 1.08 7.10 -52.49 -0.37 0.70 16 LS Contribution 369.31 15.07 5.57 5.57 Total: -1.00 -30.58 369.31 -10.45 -41.03 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -8.43 Total: -0.05 kcal Atomic # 6 Polarization: -23.56 SS G_CDS: -2.68 Total: -26.24 kcal Atomic # 7 Polarization: -37.40 SS G_CDS: 0.12 Total: -37.28 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.58 -10.45 -41.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071089290.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.102 kcal (2) G-P(sol) polarization free energy of solvation -30.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds