Wall clock time and date at job start Mon Mar 30 2020 01:29:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47255 * 2 1 4 4 C 1.50706 * 109.47030 * 120.00319 * 2 1 3 5 5 C 1.38234 * 120.00196 * 120.00088 * 4 2 1 6 6 C 1.38235 * 119.99814 * 179.97438 * 5 4 2 7 7 C 1.38230 * 120.00326 * 359.97438 * 6 5 4 8 8 C 1.50696 * 120.00328 * 179.97438 * 7 6 5 9 9 H 1.09002 * 109.46786 * 339.99822 * 8 7 6 10 10 C 1.52995 * 109.47341 * 100.00049 * 8 7 6 11 11 N 1.46899 * 109.47465 * 220.00330 * 8 7 6 12 12 C 1.46897 * 111.00379 * 154.99949 * 11 8 7 13 13 C 1.52997 * 109.47291 * 180.02562 * 12 11 8 14 14 C 1.52997 * 109.47359 * 179.97438 * 13 12 11 15 15 C 1.50700 * 109.47514 * 179.97438 * 14 13 12 16 16 H 1.08003 * 119.99672 * 0.02562 * 15 14 13 17 17 C 1.37873 * 120.00052 * 179.97438 * 15 14 13 18 18 N 1.31510 * 120.00351 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99919 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.46987 * 89.99838 * 19 17 15 21 21 H 1.48498 * 109.47221 * 210.00075 * 19 17 15 22 22 H 1.48502 * 109.47002 * 330.00440 * 19 17 15 23 23 C 1.38235 * 119.99899 * 359.95697 * 7 6 5 24 24 C 1.38234 * 120.00205 * 0.02562 * 23 7 6 25 25 H 1.08994 * 109.47514 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47334 * 299.99945 * 1 2 3 27 27 H 1.09001 * 109.47441 * 59.99583 * 1 2 3 28 28 H 1.08995 * 109.46790 * 239.99929 * 2 1 3 29 29 H 1.08994 * 109.47197 * 179.97438 * 3 2 1 30 30 H 1.08991 * 109.46972 * 300.00052 * 3 2 1 31 31 H 1.09004 * 109.47360 * 60.00072 * 3 2 1 32 32 H 1.08000 * 119.99516 * 0.24808 * 5 4 2 33 33 H 1.08000 * 119.99297 * 179.97438 * 6 5 4 34 34 H 1.09001 * 109.47531 * 180.02562 * 10 8 7 35 35 H 1.08998 * 109.46960 * 300.00217 * 10 8 7 36 36 H 1.09002 * 109.47366 * 60.00128 * 10 8 7 37 37 H 1.00905 * 110.99983 * 278.95743 * 11 8 7 38 38 H 1.09001 * 109.46759 * 299.99631 * 12 11 8 39 39 H 1.08992 * 109.47226 * 59.99690 * 12 11 8 40 40 H 1.09001 * 109.46861 * 299.99499 * 13 12 11 41 41 H 1.09006 * 109.47196 * 59.99642 * 13 12 11 42 42 H 1.09001 * 109.47376 * 299.99775 * 14 13 12 43 43 H 1.09006 * 109.47124 * 59.99763 * 14 13 12 44 44 H 0.96995 * 120.00442 * 179.97438 * 18 17 15 45 45 H 1.07999 * 120.00043 * 179.97438 * 23 7 6 46 46 H 1.07997 * 120.00455 * 179.97438 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2305 5 6 2.8270 -1.8344 1.1036 6 6 3.2882 -2.4858 2.2323 7 6 2.9551 -2.0129 3.4878 8 6 3.4573 -2.7233 4.7183 9 1 3.7458 -3.7416 4.4575 10 6 4.6699 -1.9774 5.2787 11 7 2.3939 -2.7599 5.7311 12 6 2.5830 -3.8881 6.6526 13 6 1.4584 -3.8933 7.6900 14 6 1.6550 -5.0688 8.6494 15 6 0.5477 -5.0736 9.6716 16 1 -0.2198 -4.3144 9.6398 17 6 0.5138 -6.0478 10.6467 18 7 1.4481 -6.9726 10.6850 19 14 -0.8591 -6.0541 11.9133 20 1 -1.9937 -6.8691 11.4095 21 1 -0.3575 -6.6359 13.1841 22 1 -1.3178 -4.6622 12.1531 23 6 2.1615 -0.8882 3.6147 24 6 1.7006 -0.2366 2.4860 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8932 -0.5138 -0.8900 29 1 3.1299 1.4424 0.0005 30 1 1.6767 1.9562 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 3.0912 -2.2010 0.1227 33 1 3.9088 -3.3641 2.1332 34 1 5.0334 -2.4914 6.1684 35 1 5.4589 -1.9503 4.5272 36 1 4.3814 -0.9591 5.5394 37 1 2.3435 -1.8866 6.2341 38 1 2.5636 -4.8225 6.0916 39 1 3.5435 -3.7876 7.1578 40 1 1.4774 -2.9590 8.2510 41 1 0.4980 -3.9942 7.1843 42 1 1.6358 -6.0030 8.0882 43 1 2.6154 -4.9684 9.1551 44 1 1.4244 -7.6577 11.3712 45 1 1.9009 -0.5190 4.5956 46 1 1.0803 0.6419 2.5851 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071089290.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:52 Heat of formation + Delta-G solvation = -29.104702 kcal Electronic energy + Delta-G solvation = -20414.189384 eV Core-core repulsion = 17494.286635 eV Total energy + Delta-G solvation = -2919.902749 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.69370 -38.44177 -36.43795 -35.39765 -33.70159 -31.74799 -31.20352 -29.40299 -27.94821 -27.69350 -25.05485 -24.09444 -23.70885 -22.02338 -21.66295 -20.64403 -18.51730 -17.53597 -16.69406 -16.52168 -16.38268 -16.05754 -15.47193 -15.26989 -14.73763 -14.65343 -14.43806 -14.36618 -14.11133 -13.90524 -13.72095 -13.65568 -13.21606 -13.11083 -12.88326 -12.68798 -12.59633 -12.46836 -12.33422 -12.12299 -12.01000 -11.92433 -11.55030 -11.50343 -11.42170 -11.35823 -11.06807 -10.55752 -9.72354 -9.43564 -9.24578 -8.20491 -6.31524 0.51015 0.60350 1.39584 1.41246 1.52374 2.40700 2.87672 3.12488 3.27274 3.77347 3.87589 3.98143 4.10594 4.19836 4.25969 4.29333 4.36746 4.38334 4.44074 4.57948 4.64312 4.68358 4.71717 4.81183 4.83594 4.85127 5.00024 5.02329 5.03401 5.09827 5.13093 5.16974 5.24084 5.24820 5.30231 5.38731 5.41682 5.51515 5.62688 5.74896 5.76811 5.82541 5.85680 6.10951 6.21260 6.27719 6.48015 6.85360 7.37640 8.91463 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.028539 B = 0.002646 C = 0.002517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.876446 B =10580.411074 C =11123.637396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.055 4.055 3 C -0.141 4.141 4 C -0.087 4.087 5 C -0.126 4.126 6 C -0.125 4.125 7 C -0.079 4.079 8 C 0.121 3.879 9 H 0.078 0.922 10 C -0.170 4.170 11 N -0.684 5.684 12 C 0.074 3.926 13 C -0.091 4.091 14 C 0.026 3.974 15 C -0.543 4.543 16 H 0.059 0.941 17 C -0.002 4.002 18 N -0.934 5.934 19 Si 0.966 3.034 20 H -0.272 1.272 21 H -0.281 1.281 22 H -0.263 1.263 23 C -0.108 4.108 24 C -0.123 4.123 25 H 0.047 0.953 26 H 0.054 0.946 27 H 0.070 0.930 28 H 0.083 0.917 29 H 0.052 0.948 30 H 0.069 0.931 31 H 0.054 0.946 32 H 0.136 0.864 33 H 0.128 0.872 34 H 0.053 0.947 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.344 0.656 38 H 0.059 0.941 39 H 0.027 0.973 40 H 0.051 0.949 41 H 0.050 0.950 42 H -0.010 1.010 43 H -0.008 1.008 44 H 0.264 0.736 45 H 0.120 0.880 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.833 16.352 -22.491 28.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.073 4.073 3 C -0.198 4.198 4 C -0.087 4.087 5 C -0.144 4.144 6 C -0.144 4.144 7 C -0.080 4.080 8 C 0.011 3.989 9 H 0.096 0.904 10 C -0.228 4.228 11 N -0.314 5.314 12 C -0.055 4.055 13 C -0.129 4.129 14 C -0.012 4.012 15 C -0.581 4.581 16 H 0.077 0.923 17 C -0.200 4.200 18 N -0.574 5.574 19 Si 0.790 3.210 20 H -0.198 1.198 21 H -0.206 1.206 22 H -0.187 1.187 23 C -0.127 4.127 24 C -0.140 4.140 25 H 0.066 0.934 26 H 0.073 0.927 27 H 0.089 0.911 28 H 0.101 0.899 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.074 0.926 32 H 0.154 0.846 33 H 0.146 0.854 34 H 0.072 0.928 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.163 0.837 38 H 0.077 0.923 39 H 0.045 0.955 40 H 0.070 0.930 41 H 0.068 0.932 42 H 0.008 0.992 43 H 0.010 0.990 44 H 0.072 0.928 45 H 0.138 0.862 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 3.447 15.867 -22.796 27.987 hybrid contribution 0.281 -0.290 1.549 1.601 sum 3.729 15.577 -21.247 26.608 Atomic orbital electron populations 1.21851 0.94116 1.01698 1.02402 1.20151 0.96105 0.96350 0.94721 1.21832 1.00929 0.94659 1.02412 1.20091 0.97640 0.95835 0.95183 1.21224 0.98447 0.95831 0.98854 1.21168 1.00823 1.00420 0.91961 1.19821 0.98280 0.95823 0.94046 1.20453 0.89530 0.98746 0.90135 0.90357 1.22397 0.98383 1.00719 1.01345 1.60575 1.47026 1.06672 1.17174 1.21834 0.96790 0.93872 0.92979 1.21363 0.97771 0.98360 0.95451 1.18967 0.95336 0.93356 0.93556 1.21698 1.10977 1.12212 1.13198 0.92297 1.26002 0.98740 0.95060 1.00184 1.70093 1.35591 1.16112 1.35624 0.85435 0.78847 0.78768 0.77926 1.19786 1.20615 1.18726 1.21014 0.97318 0.95398 0.98932 1.21111 1.00510 1.00460 0.91963 0.93387 0.92714 0.91097 0.89886 0.92930 0.91200 0.92642 0.84649 0.85403 0.92790 0.90996 0.91835 0.83722 0.92278 0.95488 0.93045 0.93159 0.99158 0.98980 0.92757 0.86162 0.85311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 9.01 71.98 0.65 -1.28 16 2 C -0.05 -0.77 3.09 -11.54 -0.04 -0.80 16 3 C -0.14 -1.69 9.00 71.98 0.65 -1.04 16 4 C -0.09 -1.63 4.78 -19.86 -0.09 -1.73 16 5 C -0.13 -2.41 9.67 22.27 0.22 -2.20 16 6 C -0.13 -2.70 9.67 22.27 0.22 -2.48 16 7 C -0.08 -1.88 4.96 -19.87 -0.10 -1.97 16 8 C 0.12 2.99 2.79 44.17 0.12 3.11 16 9 H 0.08 2.01 7.66 -2.39 -0.02 1.99 16 10 C -0.17 -3.61 9.14 71.98 0.66 -2.95 16 11 N -0.68 -19.83 5.70 -495.48 -2.83 -22.66 16 12 C 0.07 2.60 5.48 86.30 0.47 3.07 16 13 C -0.09 -3.88 5.41 30.59 0.17 -3.71 16 14 C 0.03 1.38 4.97 29.85 0.15 1.53 16 15 C -0.54 -31.71 9.11 25.60 0.23 -31.48 16 16 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 17 C 0.00 -0.14 5.46 84.65 0.46 0.33 16 18 N -0.93 -57.80 13.29 21.45 0.28 -57.52 16 19 Si 0.97 45.02 29.54 68.60 2.03 47.04 16 20 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 21 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 22 H -0.26 -11.70 7.11 99.48 0.71 -11.00 16 23 C -0.11 -2.48 9.32 22.27 0.21 -2.28 16 24 C -0.12 -2.48 8.71 22.27 0.19 -2.29 16 25 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.05 0.76 7.40 -2.38 -0.02 0.75 16 27 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.08 1.02 7.88 -2.39 -0.02 1.00 16 29 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.05 0.68 7.38 -2.38 -0.02 0.67 16 32 H 0.14 2.00 7.95 -2.91 -0.02 1.98 16 33 H 0.13 2.39 8.04 -2.91 -0.02 2.37 16 34 H 0.05 1.22 7.45 -2.39 -0.02 1.20 16 35 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.06 1.28 8.13 -2.39 -0.02 1.26 16 37 H 0.34 9.20 7.82 -89.69 -0.70 8.50 16 38 H 0.06 2.16 8.06 -2.39 -0.02 2.14 16 39 H 0.03 0.93 7.44 -2.39 -0.02 0.92 16 40 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 41 H 0.05 2.18 8.14 -2.38 -0.02 2.16 16 42 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 43 H -0.01 -0.47 8.14 -2.38 -0.02 -0.49 16 44 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 45 H 0.12 2.66 7.25 -2.91 -0.02 2.64 16 46 H 0.13 2.21 7.10 -2.91 -0.02 2.19 16 Total: -1.00 -65.21 369.31 3.86 -61.35 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: 0.22 Total: 17.96 kcal Atomic # 6 Polarization: -50.34 SS G_CDS: 4.16 Total: -46.18 kcal Atomic # 7 Polarization: -77.63 SS G_CDS: -2.54 Total: -80.17 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.04 kcal Total: -65.21 3.86 -61.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071089290.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.241 kcal (2) G-P(sol) polarization free energy of solvation -65.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds