Wall clock time and date at job start Mon Mar 30 2020 01:51:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.29319 * 126.06100 * 2 1 4 4 N 1.26103 * 117.97503 * 179.97438 * 3 2 1 5 5 C 1.30309 * 117.60328 * 0.02562 * 4 3 2 6 6 S 1.76201 * 126.16797 * 179.97438 * 5 4 3 7 7 C 1.81005 * 100.00084 * 359.97282 * 6 5 4 8 8 C 1.53002 * 109.46995 * 180.02562 * 7 6 5 9 9 C 1.52993 * 109.46974 * 179.97438 * 8 7 6 10 10 S 1.81003 * 109.47216 * 179.97438 * 9 8 7 11 11 C 1.76196 * 99.99940 * 180.02562 * 10 9 8 12 12 H 1.07996 * 120.00228 * 0.02562 * 11 10 9 13 13 C 1.38806 * 119.99625 * 180.02562 * 11 10 9 14 14 N 1.31635 * 119.99643 * 180.02562 * 13 11 10 15 15 Si 1.86791 * 120.00166 * 359.97438 * 13 11 10 16 16 H 1.48510 * 109.46860 * 90.00243 * 15 13 11 17 17 H 1.48500 * 109.47175 * 210.00224 * 15 13 11 18 18 H 1.48500 * 109.47521 * 330.00467 * 15 13 11 19 19 S 1.76484 * 126.05921 * 179.97438 * 2 1 3 20 20 H 1.09004 * 109.47237 * 90.02529 * 1 2 3 21 21 H 1.09000 * 109.47624 * 210.02273 * 1 2 3 22 22 H 1.09000 * 109.47367 * 330.02454 * 1 2 3 23 23 H 1.09004 * 109.46719 * 300.00238 * 7 6 5 24 24 H 1.08992 * 109.47037 * 59.99797 * 7 6 5 25 25 H 1.09000 * 109.46728 * 299.99489 * 8 7 6 26 26 H 1.08993 * 109.47166 * 59.99316 * 8 7 6 27 27 H 1.08997 * 109.47680 * 299.99845 * 9 8 7 28 28 H 1.09005 * 109.47214 * 59.99562 * 9 8 7 29 29 H 0.97004 * 119.99825 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2682 1.0454 0.0000 4 7 3.5167 0.8680 0.0005 5 6 3.9520 -0.3602 0.0005 6 16 5.6402 -0.8651 0.0005 7 6 6.4521 0.7527 -0.0003 8 6 7.9701 0.5614 -0.0011 9 6 8.6564 1.9288 -0.0024 10 16 10.4522 1.7026 -0.0026 11 6 10.9726 3.3859 -0.0034 12 1 10.2386 4.1781 -0.0032 13 6 12.3261 3.6939 -0.0042 14 7 12.7149 4.9515 -0.0043 15 14 13.5957 2.3238 -0.0038 16 1 13.9315 1.9597 -1.4039 17 1 14.8218 2.7853 0.6954 18 1 13.0431 1.1370 0.6973 19 16 2.5458 -1.4267 0.0006 20 1 -0.3634 -0.0005 -1.0277 21 1 -0.3634 -0.8898 0.5142 22 1 -0.3634 0.8902 0.5134 23 1 6.1556 1.3075 -0.8906 24 1 6.1559 1.3082 0.8894 25 1 8.2668 0.0064 0.8889 26 1 8.2659 0.0059 -0.8910 27 1 8.3597 2.4834 -0.8926 28 1 8.3606 2.4846 0.8874 29 1 13.6607 5.1667 -0.0045 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075075613.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:20 Heat of formation + Delta-G solvation = 40.038856 kcal Electronic energy + Delta-G solvation = -13555.569948 eV Core-core repulsion = 11050.856893 eV Total energy + Delta-G solvation = -2504.713055 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 276.012 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.17504 -34.59828 -33.40449 -32.45863 -29.55960 -27.22089 -25.65428 -25.56702 -21.86900 -20.95057 -19.34913 -17.52775 -17.36784 -16.15104 -15.46399 -15.38948 -14.99018 -14.35486 -14.09891 -13.72579 -13.64670 -13.06146 -12.90202 -12.81826 -12.38417 -11.98688 -11.27620 -11.11050 -10.99973 -10.88375 -10.78711 -10.62357 -10.43426 -10.16210 -9.91396 -9.82809 -9.02829 -8.62405 -8.02105 -6.98909 -6.30186 -4.03697 -0.03114 0.25971 0.84507 1.18612 1.84829 2.24063 2.97237 3.28582 3.43248 3.53824 3.83183 4.29370 4.50488 4.72619 4.76990 4.89245 4.92755 5.01934 5.08647 5.14176 5.35890 5.41635 5.58622 5.75293 6.03219 6.26740 6.49853 7.93425 8.23914 8.43057 9.15163 10.79243 Molecular weight = 276.01amu Principal moments of inertia in cm(-1) A = 0.056209 B = 0.002906 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.024509 B = 9632.749867 C =10099.724192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.025 3.975 3 N -0.252 5.252 4 N -0.267 5.267 5 C 0.002 3.998 6 S 0.029 5.971 7 C -0.103 4.103 8 C -0.090 4.090 9 C -0.079 4.079 10 S -0.210 6.210 11 C -0.504 4.504 12 H 0.089 0.911 13 C 0.093 3.907 14 N -0.880 5.880 15 Si 0.861 3.139 16 H -0.268 1.268 17 H -0.275 1.275 18 H -0.238 1.238 19 S 0.093 5.907 20 H 0.092 0.908 21 H 0.086 0.914 22 H 0.096 0.904 23 H 0.100 0.900 24 H 0.100 0.900 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.699 -15.094 0.085 27.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.260 4.260 3 N -0.089 5.089 4 N -0.108 5.108 5 C -0.385 4.385 6 S 0.261 5.739 7 C -0.255 4.255 8 C -0.130 4.130 9 C -0.229 4.229 10 S 0.017 5.983 11 C -0.652 4.652 12 H 0.107 0.893 13 C -0.116 4.116 14 N -0.517 5.517 15 Si 0.686 3.314 16 H -0.193 1.193 17 H -0.200 1.200 18 H -0.162 1.162 19 S 0.332 5.668 20 H 0.111 0.889 21 H 0.104 0.896 22 H 0.115 0.885 23 H 0.119 0.881 24 H 0.119 0.881 25 H 0.098 0.902 26 H 0.098 0.902 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -21.361 -16.693 0.091 27.109 hybrid contribution -0.532 2.036 -0.044 2.105 sum -21.893 -14.656 0.047 26.346 Atomic orbital electron populations 1.20409 0.83613 1.04811 1.04461 1.29924 1.02993 0.89122 1.03937 1.70767 0.97149 1.26916 1.14019 1.71762 1.05525 1.15984 1.17561 1.31564 1.06176 0.94786 1.06014 1.85851 0.86304 1.12832 1.88932 1.23880 0.98843 0.94957 1.07790 1.21166 0.89376 0.98314 1.04130 1.23023 0.97898 0.97627 1.04374 1.84145 1.00671 1.15896 1.97572 1.22114 0.95983 0.88429 1.58632 0.89293 1.24792 0.97800 0.95710 0.93288 1.69942 1.16718 1.16953 1.48080 0.86674 0.81570 0.83386 0.79731 1.19333 1.20037 1.16172 1.85706 0.97999 1.12206 1.70871 0.88928 0.89566 0.88546 0.88127 0.88114 0.90230 0.90247 0.90928 0.90889 0.91929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.36 10.51 36.00 0.38 0.02 15 2 C 0.02 0.24 7.79 -13.34 -0.10 0.14 15 3 N -0.25 -3.37 11.55 33.57 0.39 -2.99 15 4 N -0.27 -3.85 10.96 31.32 0.34 -3.50 15 5 C 0.00 0.02 7.85 52.12 0.41 0.43 15 6 S 0.03 0.33 22.31 -107.50 -2.40 -2.07 15 7 C -0.10 -1.32 5.22 37.16 0.19 -1.12 15 8 C -0.09 -1.29 5.22 -26.73 -0.14 -1.43 15 9 C -0.08 -1.48 5.67 37.15 0.21 -1.27 15 10 S -0.21 -5.03 19.41 -107.50 -2.09 -7.11 15 11 C -0.50 -14.54 10.04 30.94 0.31 -14.23 15 12 H 0.09 2.74 8.03 -52.49 -0.42 2.32 15 13 C 0.09 2.69 5.50 -17.43 -0.10 2.60 15 14 N -0.88 -26.66 13.97 55.49 0.78 -25.88 15 15 Si 0.86 21.35 27.74 -169.99 -4.71 16.64 15 16 H -0.27 -6.56 7.11 56.52 0.40 -6.16 15 17 H -0.28 -6.61 7.11 56.52 0.40 -6.21 15 18 H -0.24 -5.75 6.74 56.52 0.38 -5.37 15 19 S 0.09 0.87 23.53 -107.50 -2.53 -1.66 15 20 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 15 21 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 15 22 H 0.10 0.44 8.14 -51.93 -0.42 0.02 15 23 H 0.10 1.31 8.14 -51.91 -0.42 0.89 15 24 H 0.10 1.31 8.14 -51.92 -0.42 0.89 15 25 H 0.08 1.12 8.14 -51.93 -0.42 0.70 15 26 H 0.08 1.12 8.14 -51.93 -0.42 0.69 15 27 H 0.07 1.37 8.14 -51.92 -0.42 0.94 15 28 H 0.07 1.37 8.14 -51.91 -0.42 0.95 15 29 H 0.27 7.60 8.31 -40.82 -0.34 7.26 15 LS Contribution 297.84 15.07 4.49 4.49 Total: -1.00 -32.35 297.84 -7.95 -40.31 By element: Atomic # 1 Polarization: 0.04 SS G_CDS: -3.38 Total: -3.34 kcal Atomic # 6 Polarization: -16.04 SS G_CDS: 1.16 Total: -14.87 kcal Atomic # 7 Polarization: -33.88 SS G_CDS: 1.51 Total: -32.37 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.71 Total: 16.64 kcal Atomic # 16 Polarization: -3.83 SS G_CDS: -7.02 Total: -10.85 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -32.35 -7.95 -40.31 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075075613.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.347 kcal (2) G-P(sol) polarization free energy of solvation -32.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds