Wall clock time and date at job start Mon Mar 30 2020 01:42:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30817 * 1 3 3 Si 1.86804 * 119.99951 * 2 1 4 4 H 1.48496 * 109.46890 * 275.40971 * 3 2 1 5 5 H 1.48504 * 109.46878 * 35.40668 * 3 2 1 6 6 H 1.48495 * 109.47295 * 155.40611 * 3 2 1 7 7 C 1.39958 * 120.00266 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00015 * 341.68386 * 7 2 1 9 9 C 1.41149 * 120.00062 * 161.68564 * 7 2 1 10 10 C 1.41547 * 119.87388 * 150.04090 * 9 7 2 11 11 C 1.35282 * 120.74674 * 180.25173 * 10 9 7 12 12 C 1.41128 * 120.21760 * 359.45697 * 11 10 9 13 13 C 1.40160 * 120.89565 * 180.24443 * 12 11 10 14 14 C 1.36495 * 119.77895 * 180.28619 * 13 12 11 15 15 Br 1.89107 * 119.49399 * 179.97438 * 14 13 12 16 16 C 1.39387 * 121.01285 * 0.02562 * 14 13 12 17 17 C 1.36128 * 120.89927 * 359.97438 * 16 14 13 18 18 C 1.40861 * 119.65704 * 0.02562 * 17 16 14 19 19 C 1.39928 * 121.02276 * 179.97438 * 18 17 16 20 20 H 0.96999 * 120.00501 * 0.02562 * 1 2 3 21 21 H 1.07996 * 119.62497 * 359.97438 * 10 9 7 22 22 H 1.08001 * 119.89202 * 179.72147 * 11 10 9 23 23 H 1.07995 * 120.10630 * 0.31446 * 13 12 11 24 24 H 1.07998 * 119.55172 * 179.97438 * 16 14 13 25 25 H 1.08000 * 120.16821 * 180.02562 * 17 16 14 26 26 H 1.07998 * 120.32098 * 0.03338 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3753 2.1124 -1.3938 5 1 1.5013 2.6170 0.8112 6 1 3.5921 1.4100 0.5827 7 6 2.0080 -1.2120 0.0005 8 1 1.5091 -2.1236 0.2949 9 6 3.3659 -1.2431 -0.3836 10 6 4.2343 -2.2119 0.1740 11 6 5.5399 -2.2545 -0.1777 12 6 6.0524 -1.3358 -1.1185 13 6 7.4015 -1.3704 -1.4969 14 6 7.8744 -0.4671 -2.4045 15 35 9.6962 -0.5206 -2.9087 16 6 7.0353 0.4948 -2.9644 17 6 5.7195 0.5595 -2.6216 18 6 5.1965 -0.3566 -1.6880 19 6 3.8486 -0.3155 -1.3147 20 1 -0.4851 0.8400 -0.0004 21 1 3.8512 -2.9223 0.8916 22 1 6.1912 -2.9967 0.2597 23 1 8.0645 -2.1095 -1.0722 24 1 7.4345 1.1982 -3.6801 25 1 5.0798 1.3094 -3.0631 26 1 3.1870 0.4240 -1.7410 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079749913.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:41 Heat of formation + Delta-G solvation = 12.656549 kcal Electronic energy + Delta-G solvation = -13067.042908 eV Core-core repulsion = 10734.181502 eV Total energy + Delta-G solvation = -2332.861406 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 275.984 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.86155 -37.65975 -35.39282 -33.56757 -32.61447 -30.51897 -30.17448 -26.73320 -24.19896 -23.02512 -22.62134 -19.61512 -17.94841 -17.86900 -16.86782 -16.26181 -15.59130 -15.10507 -14.67373 -14.49075 -14.26021 -14.08102 -13.57645 -13.17363 -12.77872 -12.56869 -12.43866 -12.02954 -11.68287 -11.57669 -11.22487 -11.13255 -11.04845 -10.45959 -9.35314 -9.03636 -8.72637 -6.56770 -0.21230 0.24811 0.80762 1.19148 1.30182 1.30670 1.48332 2.01171 2.08177 2.77937 3.52340 3.84581 4.07267 4.29271 4.41442 4.45184 4.61688 4.72091 4.79661 4.93505 5.13299 5.29916 5.31012 5.46817 5.57061 5.71363 5.84868 6.05068 6.09249 6.28211 6.58728 6.71145 8.02613 Molecular weight = 275.98amu Principal moments of inertia in cm(-1) A = 0.044611 B = 0.005205 C = 0.004793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.497752 B = 5377.740021 C = 5840.723969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.830 5.830 2 C 0.053 3.947 3 Si 0.965 3.035 4 H -0.262 1.262 5 H -0.276 1.276 6 H -0.256 1.256 7 C -0.461 4.461 8 H 0.071 0.929 9 C 0.080 3.920 10 C -0.164 4.164 11 C -0.078 4.078 12 C -0.146 4.146 13 C -0.038 4.038 14 C -0.151 4.151 15 Br -0.057 7.057 16 C -0.079 4.079 17 C -0.155 4.155 18 C 0.003 3.997 19 C -0.300 4.300 20 H 0.298 0.702 21 H 0.122 0.878 22 H 0.149 0.851 23 H 0.147 0.853 24 H 0.142 0.858 25 H 0.127 0.873 26 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.823 0.930 -3.912 16.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.165 4.165 3 Si 0.789 3.211 4 H -0.187 1.187 5 H -0.203 1.203 6 H -0.180 1.180 7 C -0.489 4.489 8 H 0.089 0.911 9 C 0.078 3.922 10 C -0.183 4.183 11 C -0.096 4.096 12 C -0.148 4.148 13 C -0.058 4.058 14 C -0.231 4.231 15 Br 0.028 6.972 16 C -0.098 4.098 17 C -0.174 4.174 18 C 0.002 3.998 19 C -0.320 4.320 20 H 0.109 0.891 21 H 0.140 0.860 22 H 0.166 0.834 23 H 0.165 0.835 24 H 0.160 0.840 25 H 0.145 0.855 26 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 16.192 0.985 -4.076 16.726 hybrid contribution -0.953 0.598 0.153 1.135 sum 15.239 1.583 -3.923 15.815 Atomic orbital electron populations 1.69694 1.09089 1.31989 1.34670 1.26827 0.95289 1.04179 0.90184 0.85442 0.79508 0.76738 0.79415 1.18735 1.20302 1.18032 1.19661 0.94376 0.95970 1.38891 0.91117 1.17917 0.92807 0.91823 0.89702 1.21215 0.93919 1.01137 1.02001 1.21038 0.95411 0.97434 0.95670 1.18005 0.93744 0.99977 1.03059 1.21029 0.93941 0.96613 0.94194 1.21231 0.91335 1.03940 1.06553 1.96557 1.09944 1.98802 1.91945 1.20732 0.92675 0.97342 0.99076 1.21093 0.95869 1.00303 1.00116 1.18171 0.93207 0.93957 0.94423 1.20933 0.95271 1.08083 1.07709 0.89092 0.85980 0.83365 0.83545 0.84039 0.85462 0.88507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.40 13.93 21.83 0.30 -43.10 15 2 C 0.05 2.71 5.39 85.26 0.46 3.17 15 3 Si 0.96 42.28 24.52 68.60 1.68 43.96 15 4 H -0.26 -11.06 6.71 99.48 0.67 -10.39 15 5 H -0.28 -11.28 7.11 99.48 0.71 -10.58 15 6 H -0.26 -11.69 6.87 99.48 0.68 -11.01 15 7 C -0.46 -24.44 9.54 23.40 0.22 -24.22 15 8 H 0.07 3.94 8.06 -2.91 -0.02 3.92 15 9 C 0.08 3.92 5.11 -21.32 -0.11 3.81 15 10 C -0.16 -6.89 9.66 22.40 0.22 -6.67 15 11 C -0.08 -2.82 9.71 22.30 0.22 -2.61 15 12 C -0.15 -5.61 5.75 -21.18 -0.12 -5.73 15 13 C -0.04 -1.22 9.44 22.33 0.21 -1.01 15 14 C -0.15 -4.68 6.19 22.14 0.14 -4.54 15 15 Br -0.06 -1.43 33.65 -20.37 -0.69 -2.11 15 16 C -0.08 -2.50 9.68 22.06 0.21 -2.29 15 17 C -0.15 -5.69 9.77 22.42 0.22 -5.47 15 18 C 0.00 0.12 5.74 -21.30 -0.12 -0.01 15 19 C -0.30 -14.21 6.91 23.11 0.16 -14.05 15 20 H 0.30 13.98 8.30 -92.71 -0.77 13.21 15 21 H 0.12 4.67 8.06 -2.91 -0.02 4.64 15 22 H 0.15 4.13 8.06 -2.91 -0.02 4.11 15 23 H 0.15 3.84 8.06 -2.91 -0.02 3.82 15 24 H 0.14 3.68 8.06 -2.91 -0.02 3.66 15 25 H 0.13 4.32 8.06 -2.91 -0.02 4.30 15 26 H 0.10 4.65 4.73 -2.91 -0.01 4.64 15 Total: -1.00 -54.68 247.05 4.14 -50.54 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: 1.13 Total: 10.31 kcal Atomic # 6 Polarization: -61.31 SS G_CDS: 1.70 Total: -59.60 kcal Atomic # 7 Polarization: -43.40 SS G_CDS: 0.30 Total: -43.10 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 1.68 Total: 43.96 kcal Atomic # 35 Polarization: -1.43 SS G_CDS: -0.69 Total: -2.11 kcal Total: -54.68 4.14 -50.54 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079749913.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.201 kcal (2) G-P(sol) polarization free energy of solvation -54.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds