Wall clock time and date at job start Mon Mar 30 2020 01:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50697 * 109.47239 * 120.00336 * 2 1 3 5 5 C 1.38236 * 120.00494 * 79.72384 * 4 2 1 6 6 C 1.38230 * 120.00249 * 179.78970 * 5 4 2 7 7 C 1.38243 * 119.99993 * 0.46102 * 6 5 4 8 8 C 1.50697 * 119.99861 * 179.78970 * 7 6 5 9 9 C 1.52998 * 109.47014 * 239.97804 * 8 7 6 10 10 C 1.53000 * 109.47339 * 359.97438 * 8 7 6 11 11 C 1.53003 * 109.46673 * 119.98267 * 8 7 6 12 12 C 1.38233 * 119.99792 * 359.77099 * 7 6 5 13 13 C 1.38237 * 119.99831 * 259.99925 * 4 2 1 14 14 N 1.46902 * 109.46626 * 240.00176 * 2 1 3 15 15 C 1.46900 * 110.99690 * 183.95399 * 14 2 1 16 16 C 1.46891 * 111.00371 * 60.00148 * 14 2 1 17 17 C 1.50701 * 109.47203 * 190.00018 * 16 14 2 18 18 H 1.07992 * 120.00105 * 359.97438 * 17 16 14 19 19 C 1.37884 * 119.99865 * 180.02562 * 17 16 14 20 20 N 1.31513 * 119.99922 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99810 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47195 * 59.99540 * 21 19 17 23 23 H 1.48500 * 109.46940 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.47061 * 299.99655 * 21 19 17 25 25 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 26 26 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 27 27 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 28 28 H 1.08005 * 119.99403 * 359.97438 * 5 4 2 29 29 H 1.08002 * 120.00024 * 180.25496 * 6 5 4 30 30 H 1.09003 * 109.47051 * 60.00789 * 9 8 7 31 31 H 1.09004 * 109.47100 * 180.02562 * 9 8 7 32 32 H 1.08996 * 109.47270 * 300.00001 * 9 8 7 33 33 H 1.09006 * 109.46701 * 59.99996 * 10 8 7 34 34 H 1.08996 * 109.46839 * 179.97438 * 10 8 7 35 35 H 1.09001 * 109.47043 * 299.99993 * 10 8 7 36 36 H 1.08996 * 109.47650 * 59.99974 * 11 8 7 37 37 H 1.09004 * 109.46797 * 179.97438 * 11 8 7 38 38 H 1.08998 * 109.46943 * 299.99589 * 11 8 7 39 39 H 1.07999 * 120.00228 * 179.97438 * 12 7 6 40 40 H 1.08002 * 119.99981 * 359.97438 * 13 4 2 41 41 H 1.09007 * 109.47437 * 59.99685 * 15 14 2 42 42 H 1.09004 * 109.47505 * 179.97438 * 15 14 2 43 43 H 1.08998 * 109.47445 * 300.00210 * 15 14 2 44 44 H 1.09007 * 109.46892 * 309.99625 * 16 14 2 45 45 H 1.09002 * 109.47283 * 69.99373 * 16 14 2 46 46 H 0.97004 * 119.99796 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 6 2.0615 -2.0920 1.2674 6 6 2.5264 -2.7436 2.3944 7 6 2.9533 -2.0138 3.4881 8 6 3.4557 -2.7242 4.7185 9 6 2.5846 -2.3449 5.9177 10 6 3.3883 -4.2367 4.4974 11 6 4.9040 -2.3122 4.9896 12 6 2.9197 -0.6323 3.4529 13 6 2.4588 0.0194 2.3242 14 7 2.0196 -0.6925 -1.1995 15 6 3.4850 -0.7945 -1.1871 16 6 1.5486 -0.0264 -2.4211 17 6 1.8578 -0.8912 -3.6159 18 1 2.3549 -1.8404 -3.4813 19 6 1.5070 -0.4699 -4.8811 20 7 0.9022 0.6863 -5.0450 21 14 1.8909 -1.5415 -6.3622 22 1 1.2054 -2.8508 -6.2169 23 1 1.4147 -0.8681 -7.5971 24 1 3.3575 -1.7577 -6.4499 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.7238 -2.6622 0.4146 29 1 2.5530 -3.8230 2.4218 30 1 1.5527 -2.6385 5.7246 31 1 2.9482 -2.8585 6.8078 32 1 2.6325 -1.2675 6.0753 33 1 4.0089 -4.5069 3.6429 34 1 3.7521 -4.7504 5.3871 35 1 2.3565 -4.5300 4.3043 36 1 4.9519 -1.2347 5.1472 37 1 5.2673 -2.8257 5.8798 38 1 5.5246 -2.5824 4.1352 39 1 3.2528 -0.0620 4.3074 40 1 2.4323 1.0987 2.2968 41 1 3.8030 -1.3532 -0.3068 42 1 3.8209 -1.3117 -2.0860 43 1 3.9187 0.2051 -1.1592 44 1 0.4721 0.1324 -2.3563 45 1 2.0518 0.9346 -2.5280 46 1 0.6550 0.9825 -5.9351 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083219187.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:06 Heat of formation + Delta-G solvation = 10.804418 kcal Electronic energy + Delta-G solvation = -21598.574289 eV Core-core repulsion = 18680.402129 eV Total energy + Delta-G solvation = -2918.172159 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.91251 -37.67264 -35.59886 -32.71798 -31.09856 -30.79050 -28.76135 -27.45513 -27.38295 -27.05837 -24.37765 -23.57194 -22.14689 -21.50974 -19.51487 -18.93125 -16.71129 -16.10087 -15.45094 -14.83627 -14.61164 -14.39195 -14.27992 -14.05250 -13.74830 -13.53007 -13.14211 -12.86058 -12.81025 -12.62412 -12.07564 -11.95471 -11.87464 -11.81428 -11.60155 -11.38012 -11.28995 -11.11671 -10.90986 -10.84440 -10.78781 -10.59331 -10.53270 -10.36016 -10.16117 -9.65362 -9.18971 -8.60903 -8.40031 -8.17428 -7.20642 -6.00629 -4.01286 1.61727 1.70990 3.34724 3.38588 3.41632 4.01802 4.44151 4.55079 4.67338 4.89239 4.93862 5.18219 5.23157 5.24649 5.33149 5.35476 5.43617 5.46316 5.62016 5.70932 5.72611 5.72941 5.81776 5.88802 5.90174 5.93177 5.95644 6.12520 6.17297 6.18743 6.26906 6.28746 6.38580 6.43690 6.51969 6.72088 6.77908 6.80830 6.86365 7.03294 7.31194 7.36953 7.38660 7.83177 8.13161 8.24741 8.58771 9.06034 9.62359 11.10290 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.031658 B = 0.003654 C = 0.003476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.251877 B = 7660.961760 C = 8053.655429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.116 3.884 3 H 0.035 0.965 4 C -0.065 4.065 5 C -0.087 4.087 6 C -0.127 4.127 7 C -0.083 4.083 8 C -0.028 4.028 9 C -0.137 4.137 10 C -0.143 4.143 11 C -0.137 4.137 12 C -0.120 4.120 13 C -0.120 4.120 14 N -0.531 5.531 15 C 0.037 3.963 16 C 0.189 3.811 17 C -0.506 4.506 18 H 0.062 0.938 19 C 0.055 3.945 20 N -0.900 5.900 21 Si 0.897 3.103 22 H -0.276 1.276 23 H -0.288 1.288 24 H -0.278 1.278 25 H 0.047 0.953 26 H 0.068 0.932 27 H 0.061 0.939 28 H 0.133 0.867 29 H 0.121 0.879 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.059 0.941 34 H 0.054 0.946 35 H 0.059 0.941 36 H 0.055 0.945 37 H 0.054 0.946 38 H 0.056 0.944 39 H 0.113 0.887 40 H 0.115 0.885 41 H 0.048 0.952 42 H 0.073 0.927 43 H 0.008 0.992 44 H 0.038 0.962 45 H -0.011 1.011 46 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.157 -5.020 20.344 21.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.007 3.993 3 H 0.053 0.947 4 C -0.066 4.066 5 C -0.106 4.106 6 C -0.145 4.145 7 C -0.083 4.083 8 C -0.028 4.028 9 C -0.194 4.194 10 C -0.200 4.200 11 C -0.195 4.195 12 C -0.138 4.138 13 C -0.138 4.138 14 N -0.256 5.256 15 C -0.112 4.112 16 C 0.064 3.936 17 C -0.544 4.544 18 H 0.080 0.920 19 C -0.146 4.146 20 N -0.539 5.539 21 Si 0.725 3.275 22 H -0.202 1.202 23 H -0.214 1.214 24 H -0.203 1.203 25 H 0.066 0.934 26 H 0.087 0.913 27 H 0.080 0.920 28 H 0.151 0.849 29 H 0.139 0.861 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.131 0.869 40 H 0.133 0.867 41 H 0.067 0.933 42 H 0.091 0.909 43 H 0.026 0.974 44 H 0.056 0.944 45 H 0.006 0.994 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.881 -5.370 20.191 21.251 hybrid contribution 0.540 0.467 -0.964 1.200 sum 4.422 -4.904 19.227 20.329 Atomic orbital electron populations 1.21842 0.93919 1.02460 1.01285 1.20519 0.95547 0.94384 0.88881 0.94720 1.19975 0.97571 0.94149 0.94896 1.21149 0.97633 0.94183 0.97592 1.21170 1.00312 0.99759 0.93243 1.19684 1.00148 0.93466 0.95025 1.19453 0.95363 0.94977 0.92983 1.21877 0.99588 1.01386 0.96551 1.21953 1.02060 0.94420 1.01599 1.21881 0.94939 1.01302 1.01334 1.20777 1.01354 0.93811 0.97902 1.20990 0.99967 0.99448 0.93441 1.62185 1.09267 1.52094 1.02065 1.22231 0.88747 0.98761 1.01448 1.19818 0.96172 0.92490 0.85134 1.21129 1.38068 1.04778 0.90461 0.91960 1.24980 0.95409 0.95218 0.99014 1.69948 1.41148 1.20081 1.22760 0.86571 0.78637 0.80515 0.81740 1.20178 1.21405 1.20329 0.93415 0.91321 0.92024 0.84941 0.86142 0.92526 0.92693 0.92558 0.92202 0.92722 0.92243 0.92554 0.92690 0.92476 0.86889 0.86731 0.93319 0.90866 0.97391 0.94410 0.99360 0.92919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 8.96 37.16 0.33 -2.08 16 2 C 0.12 2.14 2.28 -68.86 -0.16 1.98 16 3 H 0.03 0.67 8.00 -51.93 -0.42 0.25 16 4 C -0.07 -1.06 3.77 -104.62 -0.39 -1.45 16 5 C -0.09 -1.37 8.08 -39.58 -0.32 -1.69 16 6 C -0.13 -1.70 8.98 -39.58 -0.36 -2.06 16 7 C -0.08 -1.02 4.76 -104.62 -0.50 -1.52 16 8 C -0.03 -0.27 0.85 -155.66 -0.13 -0.40 16 9 C -0.14 -1.19 8.29 37.16 0.31 -0.88 16 10 C -0.14 -1.27 7.13 37.16 0.27 -1.00 16 11 C -0.14 -1.23 8.29 37.16 0.31 -0.92 16 12 C -0.12 -1.52 8.71 -39.58 -0.34 -1.86 16 13 C -0.12 -1.71 9.67 -39.58 -0.38 -2.10 16 14 N -0.53 -11.50 3.97 -237.73 -0.94 -12.44 16 15 C 0.04 0.75 8.95 60.06 0.54 1.29 16 16 C 0.19 4.91 4.54 -4.98 -0.02 4.89 16 17 C -0.51 -14.22 8.46 -34.44 -0.29 -14.51 16 18 H 0.06 1.73 7.12 -52.49 -0.37 1.36 16 19 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 20 N -0.90 -26.79 13.29 55.43 0.74 -26.06 16 21 Si 0.90 21.74 29.54 -169.99 -5.02 16.72 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 25 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 26 H 0.07 1.32 6.20 -51.93 -0.32 1.00 16 27 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.13 2.24 7.73 -52.48 -0.41 1.83 16 29 H 0.12 1.41 5.90 -52.49 -0.31 1.10 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.48 7.39 -51.93 -0.38 0.10 16 33 H 0.06 0.54 7.51 -51.93 -0.39 0.15 16 34 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.06 0.53 7.51 -51.93 -0.39 0.14 16 36 H 0.06 0.49 7.39 -51.93 -0.38 0.11 16 37 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.11 1.21 7.10 -52.49 -0.37 0.83 16 40 H 0.11 1.50 8.04 -52.49 -0.42 1.08 16 41 H 0.05 0.89 6.12 -51.93 -0.32 0.57 16 42 H 0.07 1.58 6.76 -51.93 -0.35 1.23 16 43 H 0.01 0.16 8.14 -51.93 -0.42 -0.27 16 44 H 0.04 1.03 5.83 -51.92 -0.30 0.73 16 45 H -0.01 -0.32 8.12 -51.93 -0.42 -0.74 16 46 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 355.46 15.07 5.36 5.36 Total: -1.00 -29.36 355.46 -9.19 -38.55 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -8.08 Total: -1.28 kcal Atomic # 6 Polarization: -19.60 SS G_CDS: -1.24 Total: -20.84 kcal Atomic # 7 Polarization: -38.29 SS G_CDS: -0.21 Total: -38.50 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.36 -9.19 -38.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083219187.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.358 kcal (2) G-P(sol) polarization free energy of solvation -29.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds