Wall clock time and date at job start Mon Mar 30 2020 01:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50697 * 109.47239 * 120.00336 * 2 1 3 5 5 C 1.38236 * 120.00494 * 79.72384 * 4 2 1 6 6 C 1.38230 * 120.00249 * 179.78970 * 5 4 2 7 7 C 1.38243 * 119.99993 * 0.46102 * 6 5 4 8 8 C 1.50697 * 119.99861 * 179.78970 * 7 6 5 9 9 C 1.52998 * 109.47014 * 239.97804 * 8 7 6 10 10 C 1.53000 * 109.47339 * 359.97438 * 8 7 6 11 11 C 1.53003 * 109.46673 * 119.98267 * 8 7 6 12 12 C 1.38233 * 119.99792 * 359.77099 * 7 6 5 13 13 C 1.38237 * 119.99831 * 259.99925 * 4 2 1 14 14 N 1.46902 * 109.46626 * 240.00176 * 2 1 3 15 15 C 1.46900 * 110.99690 * 183.95399 * 14 2 1 16 16 C 1.46891 * 111.00371 * 60.00148 * 14 2 1 17 17 C 1.50701 * 109.47203 * 190.00018 * 16 14 2 18 18 H 1.07992 * 120.00105 * 359.97438 * 17 16 14 19 19 C 1.37884 * 119.99865 * 180.02562 * 17 16 14 20 20 N 1.31513 * 119.99922 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99810 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47195 * 59.99540 * 21 19 17 23 23 H 1.48500 * 109.46940 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.47061 * 299.99655 * 21 19 17 25 25 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 26 26 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 27 27 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 28 28 H 1.08005 * 119.99403 * 359.97438 * 5 4 2 29 29 H 1.08002 * 120.00024 * 180.25496 * 6 5 4 30 30 H 1.09003 * 109.47051 * 60.00789 * 9 8 7 31 31 H 1.09004 * 109.47100 * 180.02562 * 9 8 7 32 32 H 1.08996 * 109.47270 * 300.00001 * 9 8 7 33 33 H 1.09006 * 109.46701 * 59.99996 * 10 8 7 34 34 H 1.08996 * 109.46839 * 179.97438 * 10 8 7 35 35 H 1.09001 * 109.47043 * 299.99993 * 10 8 7 36 36 H 1.08996 * 109.47650 * 59.99974 * 11 8 7 37 37 H 1.09004 * 109.46797 * 179.97438 * 11 8 7 38 38 H 1.08998 * 109.46943 * 299.99589 * 11 8 7 39 39 H 1.07999 * 120.00228 * 179.97438 * 12 7 6 40 40 H 1.08002 * 119.99981 * 359.97438 * 13 4 2 41 41 H 1.09007 * 109.47437 * 59.99685 * 15 14 2 42 42 H 1.09004 * 109.47505 * 179.97438 * 15 14 2 43 43 H 1.08998 * 109.47445 * 300.00210 * 15 14 2 44 44 H 1.09007 * 109.46892 * 309.99625 * 16 14 2 45 45 H 1.09002 * 109.47283 * 69.99373 * 16 14 2 46 46 H 0.97004 * 119.99796 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 6 2.0615 -2.0920 1.2674 6 6 2.5264 -2.7436 2.3944 7 6 2.9533 -2.0138 3.4881 8 6 3.4557 -2.7242 4.7185 9 6 2.5846 -2.3449 5.9177 10 6 3.3883 -4.2367 4.4974 11 6 4.9040 -2.3122 4.9896 12 6 2.9197 -0.6323 3.4529 13 6 2.4588 0.0194 2.3242 14 7 2.0196 -0.6925 -1.1995 15 6 3.4850 -0.7945 -1.1871 16 6 1.5486 -0.0264 -2.4211 17 6 1.8578 -0.8912 -3.6159 18 1 2.3549 -1.8404 -3.4813 19 6 1.5070 -0.4699 -4.8811 20 7 0.9022 0.6863 -5.0450 21 14 1.8909 -1.5415 -6.3622 22 1 1.2054 -2.8508 -6.2169 23 1 1.4147 -0.8681 -7.5971 24 1 3.3575 -1.7577 -6.4499 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.7238 -2.6622 0.4146 29 1 2.5530 -3.8230 2.4218 30 1 1.5527 -2.6385 5.7246 31 1 2.9482 -2.8585 6.8078 32 1 2.6325 -1.2675 6.0753 33 1 4.0089 -4.5069 3.6429 34 1 3.7521 -4.7504 5.3871 35 1 2.3565 -4.5300 4.3043 36 1 4.9519 -1.2347 5.1472 37 1 5.2673 -2.8257 5.8798 38 1 5.5246 -2.5824 4.1352 39 1 3.2528 -0.0620 4.3074 40 1 2.4323 1.0987 2.2968 41 1 3.8030 -1.3532 -0.3068 42 1 3.8209 -1.3117 -2.0860 43 1 3.9187 0.2051 -1.1592 44 1 0.4721 0.1324 -2.3563 45 1 2.0518 0.9346 -2.5280 46 1 0.6550 0.9825 -5.9351 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083219187.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:05 Heat of formation + Delta-G solvation = -3.720862 kcal Electronic energy + Delta-G solvation = -21599.204152 eV Core-core repulsion = 18680.402129 eV Total energy + Delta-G solvation = -2918.802023 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.00755 -39.01697 -36.82083 -34.75599 -32.59566 -31.91355 -30.11316 -28.97735 -28.17311 -28.03889 -26.20096 -24.99910 -23.35461 -22.94379 -20.94992 -19.94131 -18.63080 -17.37757 -16.91672 -16.52216 -15.97189 -15.57291 -15.49631 -15.26815 -15.07029 -14.58396 -14.38753 -14.26229 -14.08448 -13.75973 -13.53942 -13.27240 -13.04909 -12.97326 -12.75152 -12.71935 -12.50900 -12.50563 -12.40675 -12.34199 -12.19299 -12.01894 -11.76667 -11.68140 -11.33092 -11.30098 -11.18272 -10.58030 -9.70644 -9.30786 -9.02904 -8.19664 -6.29151 0.50770 0.61018 1.40667 1.43922 1.51743 2.40436 2.90805 3.12650 3.30646 3.70011 3.88676 3.92558 4.16258 4.18459 4.26553 4.38915 4.40784 4.46468 4.50266 4.65301 4.69706 4.70958 4.84120 4.85452 4.89638 4.95481 4.95876 5.06298 5.07364 5.08479 5.11331 5.18475 5.22890 5.24232 5.29983 5.32213 5.35846 5.43560 5.50194 5.64303 5.67112 5.82899 5.86497 6.08619 6.20781 6.35162 6.65308 6.86586 7.39926 8.91284 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.031658 B = 0.003654 C = 0.003476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.251877 B = 7660.961760 C = 8053.655429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.116 3.884 3 H 0.026 0.974 4 C -0.082 4.082 5 C -0.101 4.101 6 C -0.128 4.128 7 C -0.076 4.076 8 C -0.028 4.028 9 C -0.135 4.135 10 C -0.144 4.144 11 C -0.136 4.136 12 C -0.116 4.116 13 C -0.124 4.124 14 N -0.533 5.533 15 C 0.045 3.955 16 C 0.204 3.796 17 C -0.524 4.524 18 H 0.062 0.938 19 C 0.002 3.998 20 N -0.935 5.935 21 Si 0.968 3.032 22 H -0.268 1.268 23 H -0.283 1.283 24 H -0.268 1.268 25 H 0.074 0.926 26 H 0.043 0.957 27 H 0.057 0.943 28 H 0.113 0.887 29 H 0.136 0.864 30 H 0.049 0.951 31 H 0.071 0.929 32 H 0.058 0.942 33 H 0.054 0.946 34 H 0.070 0.930 35 H 0.056 0.944 36 H 0.058 0.942 37 H 0.071 0.929 38 H 0.047 0.953 39 H 0.138 0.862 40 H 0.124 0.876 41 H 0.071 0.929 42 H 0.057 0.943 43 H 0.003 0.997 44 H 0.020 0.980 45 H -0.045 1.045 46 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.171 -6.319 22.391 23.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.007 3.993 3 H 0.044 0.956 4 C -0.083 4.083 5 C -0.119 4.119 6 C -0.145 4.145 7 C -0.076 4.076 8 C -0.028 4.028 9 C -0.193 4.193 10 C -0.201 4.201 11 C -0.194 4.194 12 C -0.134 4.134 13 C -0.142 4.142 14 N -0.258 5.258 15 C -0.103 4.103 16 C 0.078 3.922 17 C -0.562 4.562 18 H 0.080 0.920 19 C -0.196 4.196 20 N -0.575 5.575 21 Si 0.793 3.207 22 H -0.193 1.193 23 H -0.208 1.208 24 H -0.193 1.193 25 H 0.093 0.907 26 H 0.062 0.938 27 H 0.076 0.924 28 H 0.131 0.869 29 H 0.153 0.847 30 H 0.068 0.932 31 H 0.090 0.910 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.089 0.911 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.090 0.910 38 H 0.066 0.934 39 H 0.156 0.844 40 H 0.142 0.858 41 H 0.090 0.910 42 H 0.076 0.924 43 H 0.021 0.979 44 H 0.038 0.962 45 H -0.027 1.027 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.902 -6.677 22.260 23.752 hybrid contribution 0.237 0.873 -1.471 1.727 sum 5.139 -5.804 20.790 22.188 Atomic orbital electron populations 1.21773 0.93501 1.02206 1.01327 1.20553 0.96012 0.93980 0.88731 0.95624 1.19725 0.99762 0.94342 0.94452 1.21038 0.98916 0.93928 0.98044 1.21338 0.99777 1.00655 0.92779 1.20054 0.98463 0.93577 0.95554 1.19534 0.96013 0.95210 0.92050 1.21870 0.98998 1.01798 0.96590 1.21962 1.01958 0.93954 1.02241 1.21879 0.94040 1.01694 1.01753 1.21051 1.00259 0.94185 0.97917 1.21127 0.99753 1.00003 0.93357 1.62104 1.10083 1.51872 1.01709 1.22152 0.87899 0.98566 1.01698 1.19474 0.94722 0.91029 0.86961 1.21446 1.38180 1.04984 0.91567 0.91990 1.25897 0.95002 0.96528 1.02181 1.70080 1.42033 1.21800 1.23612 0.85450 0.78830 0.78716 0.77705 1.19285 1.20840 1.19343 0.90681 0.93822 0.92357 0.86894 0.84652 0.93163 0.91014 0.92282 0.92673 0.91092 0.92465 0.92312 0.90970 0.93388 0.84417 0.85819 0.91012 0.92419 0.97861 0.96230 1.02716 0.92716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.72 8.96 71.98 0.65 -4.08 16 2 C 0.12 4.40 2.28 44.17 0.10 4.50 16 3 H 0.03 1.02 8.00 -2.39 -0.02 1.00 16 4 C -0.08 -2.63 3.77 -19.87 -0.07 -2.71 16 5 C -0.10 -3.12 8.08 22.27 0.18 -2.94 16 6 C -0.13 -3.23 8.98 22.27 0.20 -3.03 16 7 C -0.08 -1.69 4.76 -19.87 -0.09 -1.78 16 8 C -0.03 -0.46 0.85 -52.93 -0.05 -0.50 16 9 C -0.14 -1.89 8.29 71.98 0.60 -1.29 16 10 C -0.14 -2.14 7.13 71.98 0.51 -1.62 16 11 C -0.14 -1.99 8.29 71.98 0.60 -1.39 16 12 C -0.12 -2.63 8.71 22.27 0.19 -2.44 16 13 C -0.12 -3.36 9.67 22.27 0.22 -3.14 16 14 N -0.53 -23.92 3.97 -906.03 -3.60 -27.51 16 15 C 0.05 1.88 8.95 127.69 1.14 3.02 16 16 C 0.20 11.15 4.54 85.56 0.39 11.54 16 17 C -0.52 -30.26 8.46 25.60 0.22 -30.04 16 18 H 0.06 3.51 7.12 -2.91 -0.02 3.49 16 19 C 0.00 0.10 5.46 84.66 0.46 0.57 16 20 N -0.93 -57.05 13.29 21.45 0.28 -56.77 16 21 Si 0.97 44.92 29.54 68.60 2.03 46.94 16 22 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 23 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 24 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 25 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 26 H 0.04 1.77 6.20 -2.39 -0.01 1.75 16 27 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 28 H 0.11 3.90 7.73 -2.91 -0.02 3.87 16 29 H 0.14 2.95 5.90 -2.91 -0.02 2.94 16 30 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 32 H 0.06 0.79 7.39 -2.39 -0.02 0.78 16 33 H 0.05 0.87 7.51 -2.38 -0.02 0.85 16 34 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.06 0.87 7.51 -2.39 -0.02 0.86 16 36 H 0.06 0.83 7.39 -2.39 -0.02 0.81 16 37 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 38 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.14 2.44 7.10 -2.91 -0.02 2.42 16 40 H 0.12 3.06 8.04 -2.91 -0.02 3.04 16 41 H 0.07 2.63 6.12 -2.38 -0.01 2.62 16 42 H 0.06 2.54 6.76 -2.39 -0.02 2.53 16 43 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 44 H 0.02 1.14 5.83 -2.38 -0.01 1.12 16 45 H -0.04 -2.69 8.12 -2.39 -0.02 -2.71 16 46 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 Total: -1.00 -64.14 355.46 4.87 -59.26 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: 0.92 Total: 13.42 kcal Atomic # 6 Polarization: -40.58 SS G_CDS: 5.24 Total: -35.34 kcal Atomic # 7 Polarization: -80.97 SS G_CDS: -3.31 Total: -84.28 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.94 kcal Total: -64.14 4.87 -59.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083219187.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.543 kcal (2) G-P(sol) polarization free energy of solvation -64.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds