Wall clock time and date at job start Mon Mar 30 2020 01:54:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00322 * 2 1 4 4 H 1.48499 * 109.47187 * 270.00350 * 3 2 1 5 5 H 1.48499 * 109.46986 * 30.00193 * 3 2 1 6 6 H 1.48501 * 109.47101 * 150.00118 * 3 2 1 7 7 C 1.37887 * 119.99700 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99853 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99824 * 179.97438 * 7 2 1 10 10 C 1.52996 * 109.47258 * 180.02562 * 9 7 2 11 11 S 1.81401 * 109.47422 * 180.02562 * 10 9 7 12 12 O 1.42102 * 110.54470 * 68.37179 * 11 10 9 13 13 O 1.42103 * 110.54091 * 291.61959 * 11 10 9 14 14 C 1.76195 * 104.44888 * 179.97438 * 11 10 9 15 15 C 1.38238 * 119.98770 * 115.23212 * 14 11 10 16 16 C 1.38182 * 120.04926 * 180.23196 * 15 14 11 17 17 C 1.38497 * 120.02770 * 359.78734 * 16 15 14 18 18 F 1.35103 * 120.01374 * 180.02562 * 17 16 15 19 19 C 1.38397 * 119.97392 * 359.97438 * 17 16 15 20 20 C 1.38438 * 119.94948 * 0.02562 * 19 17 16 21 21 F 1.35104 * 120.01364 * 179.97438 * 20 19 17 22 22 H 0.96999 * 119.99695 * 359.97438 * 1 2 3 23 23 H 1.08999 * 109.47492 * 59.99679 * 9 7 2 24 24 H 1.09006 * 109.47166 * 299.99691 * 9 7 2 25 25 H 1.08999 * 109.47266 * 59.99375 * 10 9 7 26 26 H 1.09006 * 109.46644 * 299.99845 * 10 9 7 27 27 H 1.08004 * 119.97328 * 359.97253 * 15 14 11 28 28 H 1.08004 * 119.98465 * 179.76793 * 16 15 14 29 29 H 1.07995 * 120.02726 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 6 4.0215 -2.6367 -0.0023 11 16 5.8355 -2.6368 -0.0022 12 8 6.3341 -2.1473 1.2352 13 8 6.3341 -2.1455 -1.2389 14 6 6.2750 -4.3430 -0.0028 15 6 6.9417 -4.8844 -1.0861 16 6 7.2828 -6.2234 -1.0900 17 6 6.9609 -7.0238 -0.0065 18 9 7.2950 -8.3328 -0.0104 19 6 6.2979 -6.4818 1.0807 20 6 5.9566 -5.1401 1.0835 21 9 5.3089 -4.6098 2.1439 22 1 -0.4850 0.8401 0.0004 23 1 3.8752 -0.6805 0.8888 24 1 3.8745 -0.6802 -0.8912 25 1 3.6577 -3.1500 -0.8924 26 1 3.6584 -3.1510 0.8876 27 1 7.1924 -4.2612 -1.9318 28 1 7.8003 -6.6461 -1.9385 29 1 6.0468 -7.1050 1.9262 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084251232.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:30 Heat of formation + Delta-G solvation = -157.408531 kcal Electronic energy + Delta-G solvation = -18914.231513 eV Core-core repulsion = 15372.070488 eV Total energy + Delta-G solvation = -3542.161025 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 276.042 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -50.48644 -50.28819 -39.94925 -38.20322 -37.10752 -35.91155 -33.49958 -32.39131 -31.80826 -27.93992 -24.81029 -24.40400 -23.03232 -20.34713 -19.68993 -19.28163 -18.59152 -18.44883 -17.41648 -17.09557 -16.92947 -16.68426 -16.60504 -16.37538 -15.79178 -15.50185 -15.32647 -14.81821 -14.58527 -13.98545 -13.80559 -13.49718 -13.24352 -13.16657 -13.06471 -12.99139 -12.77559 -12.27751 -12.16122 -11.90707 -11.68664 -11.25785 -10.82653 -10.51154 -10.20841 -8.35021 -6.41298 -1.09090 -0.68872 -0.23421 1.34807 1.36909 1.46969 1.75260 1.92465 2.31708 2.47146 2.63656 2.95344 2.99190 3.13130 3.39869 3.66867 3.85691 3.88380 4.09065 4.26878 4.43824 4.55327 4.62556 4.73334 4.78087 5.06297 5.07330 5.45113 5.47372 6.17357 6.64917 7.23040 8.80479 Molecular weight = 276.04amu Principal moments of inertia in cm(-1) A = 0.032812 B = 0.004879 C = 0.004677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.154181 B = 5738.037663 C = 5985.279133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.014 3.986 3 Si 0.925 3.075 4 H -0.257 1.257 5 H -0.276 1.276 6 H -0.248 1.248 7 C -0.529 4.529 8 H 0.050 0.950 9 C -0.018 4.018 10 C -0.565 4.565 11 S 2.495 3.505 12 O -0.966 6.966 13 O -0.953 6.953 14 C -0.713 4.713 15 C 0.030 3.970 16 C -0.168 4.168 17 C 0.182 3.818 18 F -0.118 7.118 19 C -0.207 4.207 20 C 0.202 3.798 21 F -0.123 7.123 22 H 0.270 0.730 23 H 0.035 0.965 24 H 0.041 0.959 25 H 0.152 0.848 26 H 0.138 0.862 27 H 0.182 0.818 28 H 0.189 0.811 29 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.171 -14.698 -1.897 21.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.185 4.185 3 Si 0.748 3.252 4 H -0.182 1.182 5 H -0.201 1.201 6 H -0.171 1.171 7 C -0.568 4.568 8 H 0.068 0.932 9 C -0.057 4.057 10 C -0.697 4.697 11 S 2.679 3.321 12 O -0.964 6.964 13 O -0.950 6.950 14 C -0.801 4.801 15 C 0.011 3.989 16 C -0.188 4.188 17 C 0.162 3.838 18 F -0.096 7.096 19 C -0.227 4.227 20 C 0.181 3.819 21 F -0.101 7.101 22 H 0.079 0.921 23 H 0.053 0.947 24 H 0.059 0.941 25 H 0.170 0.830 26 H 0.156 0.844 27 H 0.199 0.801 28 H 0.207 0.793 29 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 16.626 -13.955 -1.844 21.784 hybrid contribution -0.810 -0.120 0.505 0.962 sum 15.816 -14.075 -1.339 21.214 Atomic orbital electron populations 1.70009 1.07963 1.28432 1.51590 1.25881 0.95635 1.03091 0.93901 0.86015 0.79950 0.79204 0.80046 1.18184 1.20124 1.17116 1.21148 0.90106 0.93968 1.51534 0.93193 1.19434 0.97235 0.90555 0.98472 1.30027 1.19598 1.06995 1.13106 1.05343 0.78643 0.74175 0.73925 1.93532 1.78714 1.78643 1.45462 1.93496 1.78748 1.78166 1.44627 1.30553 1.20100 1.25979 1.03504 1.21102 0.87657 0.95264 0.94831 1.21702 1.03982 0.93218 0.99875 1.17610 0.93579 0.78440 0.94121 1.91596 1.89456 1.32075 1.96505 1.21293 1.05053 0.94096 1.02291 1.16906 0.90855 0.91662 0.82479 1.91638 1.77915 1.86455 1.54130 0.92105 0.94708 0.94114 0.82979 0.84377 0.80068 0.79341 0.80402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.46 13.96 21.45 0.30 -57.16 15 2 C 0.01 0.78 5.47 84.66 0.46 1.24 15 3 Si 0.93 43.12 27.47 68.60 1.88 45.01 15 4 H -0.26 -11.37 7.11 99.48 0.71 -10.67 15 5 H -0.28 -12.51 7.11 99.48 0.71 -11.81 15 6 H -0.25 -10.91 6.54 99.48 0.65 -10.26 15 7 C -0.53 -29.51 9.66 25.60 0.25 -29.26 15 8 H 0.05 2.98 7.99 -2.91 -0.02 2.96 15 9 C -0.02 -0.83 4.05 29.85 0.12 -0.71 15 10 C -0.57 -20.00 5.91 71.98 0.43 -19.57 15 11 S 2.50 80.86 4.80 -56.49 -0.27 80.58 15 12 O -0.97 -37.40 17.35 -127.65 -2.21 -39.62 15 13 O -0.95 -32.66 16.74 -127.65 -2.14 -34.80 15 14 C -0.71 -17.84 5.58 22.32 0.12 -17.72 15 15 C 0.03 0.56 9.50 22.26 0.21 0.77 15 16 C -0.17 -2.35 10.02 22.32 0.22 -2.12 15 17 C 0.18 2.91 7.30 22.37 0.16 3.07 15 18 F -0.12 -1.79 17.27 44.97 0.78 -1.01 15 19 C -0.21 -3.81 10.01 22.36 0.22 -3.59 15 20 C 0.20 4.91 7.19 22.37 0.16 5.07 15 21 F -0.12 -3.47 15.73 44.97 0.71 -2.76 15 22 H 0.27 15.36 8.31 -92.71 -0.77 14.59 15 23 H 0.03 1.59 7.20 -2.39 -0.02 1.57 15 24 H 0.04 1.78 7.57 -2.38 -0.02 1.76 15 25 H 0.15 4.65 8.14 -2.39 -0.02 4.63 15 26 H 0.14 4.63 7.58 -2.39 -0.02 4.62 15 27 H 0.18 2.81 7.21 -2.91 -0.02 2.79 15 28 H 0.19 1.26 8.06 -2.91 -0.02 1.23 15 29 H 0.18 2.43 8.06 -2.91 -0.02 2.40 15 Total: -1.00 -71.30 278.89 2.54 -68.76 By element: Atomic # 1 Polarization: 2.69 SS G_CDS: 1.13 Total: 3.82 kcal Atomic # 6 Polarization: -65.18 SS G_CDS: 2.36 Total: -62.81 kcal Atomic # 7 Polarization: -57.46 SS G_CDS: 0.30 Total: -57.16 kcal Atomic # 8 Polarization: -70.06 SS G_CDS: -4.35 Total: -74.42 kcal Atomic # 9 Polarization: -5.26 SS G_CDS: 1.48 Total: -3.77 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 1.88 Total: 45.01 kcal Atomic # 16 Polarization: 80.86 SS G_CDS: -0.27 Total: 80.58 kcal Total: -71.30 2.54 -68.76 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084251232.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.651 kcal (2) G-P(sol) polarization free energy of solvation -71.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds