Wall clock time and date at job start Mon Mar 30 2020 01:54:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 120.00279 * 2 1 4 4 H 1.48498 * 109.47123 * 270.00109 * 3 2 1 5 5 H 1.48506 * 109.46940 * 30.00231 * 3 2 1 6 6 H 1.48493 * 109.47121 * 149.99652 * 3 2 1 7 7 C 1.37875 * 119.99809 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 179.97438 * 7 2 1 10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2 11 11 S 1.81391 * 109.47235 * 180.02562 * 10 9 7 12 12 O 1.42104 * 110.54521 * 291.62885 * 11 10 9 13 13 O 1.42108 * 110.54484 * 68.37707 * 11 10 9 14 14 C 1.76198 * 104.45172 * 180.02562 * 11 10 9 15 15 C 1.38205 * 120.00090 * 114.72475 * 14 11 10 16 16 C 1.38427 * 120.00132 * 179.77219 * 15 14 11 17 17 F 1.35097 * 120.00300 * 180.27011 * 16 15 14 18 18 C 1.38477 * 119.99539 * 0.52668 * 16 15 14 19 19 C 1.38163 * 120.00285 * 359.72631 * 18 16 15 20 20 C 1.38428 * 119.99717 * 295.00380 * 14 11 10 21 21 F 1.35094 * 120.00416 * 359.97314 * 20 14 11 22 22 H 0.97004 * 119.99097 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 24 24 H 1.08993 * 109.47304 * 300.00055 * 9 7 2 25 25 H 1.09001 * 109.46801 * 300.00442 * 10 9 7 26 26 H 1.09001 * 109.46998 * 60.00038 * 10 9 7 27 27 H 1.08001 * 119.99865 * 0.02562 * 15 14 11 28 28 H 1.08005 * 119.99571 * 179.70375 * 18 16 15 29 29 H 1.07998 * 119.99756 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6367 0.0001 11 16 5.8354 -2.6368 0.0001 12 8 6.3342 -2.1464 -1.2368 13 8 6.3341 -2.1464 1.2372 14 6 6.2751 -4.3430 -0.0005 15 6 6.9323 -4.8869 -1.0878 16 6 7.2819 -6.2263 -1.0863 17 9 7.9292 -6.7567 -2.1469 18 6 6.9633 -7.0237 0.0001 19 6 6.3017 -6.4812 1.0849 20 6 5.9570 -5.1401 1.0857 21 9 5.3100 -4.6096 2.1464 22 1 -0.4849 0.8402 0.0004 23 1 3.8751 -0.6798 0.8895 24 1 3.8745 -0.6809 -0.8904 25 1 3.6584 -3.1503 0.8903 26 1 3.6578 -3.1507 -0.8897 27 1 7.1768 -4.2660 -1.9370 28 1 7.2319 -8.0698 -0.0008 29 1 6.0529 -7.1033 1.9319 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084252504.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:31 Heat of formation + Delta-G solvation = -157.053409 kcal Electronic energy + Delta-G solvation = -18961.181617 eV Core-core repulsion = 15419.035992 eV Total energy + Delta-G solvation = -3542.145625 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 276.042 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -50.39943 -50.08158 -39.94417 -38.25445 -37.15798 -35.93011 -33.51566 -32.85175 -31.25650 -27.96862 -25.20398 -24.07450 -23.07050 -20.46697 -19.65071 -19.00795 -18.66258 -18.54551 -17.36411 -17.09058 -16.87665 -16.78268 -16.58873 -16.33476 -15.61512 -15.39926 -15.34704 -14.81423 -14.43404 -13.97187 -13.82463 -13.45602 -13.29216 -13.25239 -13.14851 -13.08298 -13.01282 -12.26500 -12.05620 -11.87370 -11.68904 -11.29629 -10.83483 -10.78047 -9.91143 -8.35788 -6.42068 -1.14096 -0.67310 -0.27959 1.34059 1.36104 1.46077 1.70189 1.93220 2.30870 2.55590 2.74831 2.90207 2.98343 3.13202 3.41668 3.67076 3.83127 3.86849 4.01393 4.19758 4.44711 4.53085 4.67669 4.69429 4.81719 5.03559 5.05099 5.45931 5.48095 6.16396 6.63952 7.22287 8.79618 Molecular weight = 276.04amu Principal moments of inertia in cm(-1) A = 0.029874 B = 0.005047 C = 0.004880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.050656 B = 5546.551985 C = 5736.560289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.015 3.985 3 Si 0.924 3.076 4 H -0.259 1.259 5 H -0.275 1.275 6 H -0.248 1.248 7 C -0.528 4.528 8 H 0.051 0.949 9 C -0.019 4.019 10 C -0.561 4.561 11 S 2.489 3.511 12 O -0.958 6.958 13 O -0.962 6.962 14 C -0.676 4.676 15 C -0.043 4.043 16 C 0.067 3.933 17 F -0.130 7.130 18 C -0.054 4.054 19 C -0.129 4.129 20 C 0.162 3.838 21 F -0.126 7.126 22 H 0.270 0.730 23 H 0.036 0.964 24 H 0.039 0.961 25 H 0.143 0.857 26 H 0.151 0.849 27 H 0.167 0.833 28 H 0.197 0.803 29 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.398 -16.132 0.241 22.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.184 4.184 3 Si 0.747 3.253 4 H -0.184 1.184 5 H -0.200 1.200 6 H -0.171 1.171 7 C -0.567 4.567 8 H 0.070 0.930 9 C -0.057 4.057 10 C -0.693 4.693 11 S 2.674 3.326 12 O -0.955 6.955 13 O -0.959 6.959 14 C -0.764 4.764 15 C -0.063 4.063 16 C 0.047 3.953 17 F -0.109 7.109 18 C -0.072 4.072 19 C -0.148 4.148 20 C 0.141 3.859 21 F -0.104 7.104 22 H 0.079 0.921 23 H 0.054 0.946 24 H 0.057 0.943 25 H 0.161 0.839 26 H 0.169 0.831 27 H 0.185 0.815 28 H 0.214 0.786 29 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 15.872 -15.353 0.244 22.084 hybrid contribution -0.616 0.296 -0.048 0.686 sum 15.256 -15.057 0.196 21.436 Atomic orbital electron populations 1.70010 1.07909 1.28432 1.51545 1.25858 0.95630 1.03015 0.93902 0.86033 0.79987 0.79327 0.79980 1.18358 1.19999 1.17137 1.21128 0.89968 0.94035 1.51563 0.93038 1.19444 0.97359 0.90457 0.98481 1.29996 1.18932 1.07136 1.13266 1.05542 0.78975 0.74195 0.73931 1.93497 1.78933 1.78225 1.44843 1.93537 1.78805 1.78359 1.45210 1.30294 1.17890 1.25862 1.02319 1.20955 0.93190 0.95076 0.97043 1.17784 0.98961 0.91792 0.86748 1.91555 1.78831 1.86168 1.54316 1.21772 0.93328 1.02578 0.89545 1.21553 0.99505 0.92026 1.01697 1.17494 0.92633 0.93227 0.82540 1.91626 1.78087 1.86765 1.53912 0.92078 0.94557 0.94304 0.83926 0.83063 0.81527 0.78552 0.78941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.38 13.96 21.45 0.30 -57.08 15 2 C 0.01 0.84 5.47 84.65 0.46 1.31 15 3 Si 0.92 43.30 27.47 68.60 1.88 45.18 15 4 H -0.26 -11.58 7.11 99.48 0.71 -10.87 15 5 H -0.27 -12.49 7.11 99.48 0.71 -11.78 15 6 H -0.25 -10.99 6.54 99.48 0.65 -10.34 15 7 C -0.53 -29.50 9.66 25.60 0.25 -29.25 15 8 H 0.05 3.06 7.99 -2.91 -0.02 3.04 15 9 C -0.02 -0.86 4.05 29.85 0.12 -0.74 15 10 C -0.56 -20.08 5.91 71.98 0.43 -19.66 15 11 S 2.49 83.75 4.80 -56.49 -0.27 83.48 15 12 O -0.96 -35.10 16.74 -127.65 -2.14 -37.24 15 13 O -0.96 -37.74 17.35 -127.65 -2.22 -39.96 15 14 C -0.68 -17.72 5.58 22.31 0.12 -17.60 15 15 C -0.04 -0.98 9.48 22.31 0.21 -0.77 15 16 C 0.07 1.21 7.30 22.37 0.16 1.37 15 17 F -0.13 -2.37 17.27 44.97 0.78 -1.59 15 18 C -0.05 -0.64 10.02 22.31 0.22 -0.42 15 19 C -0.13 -1.82 10.02 22.31 0.22 -1.59 15 20 C 0.16 3.73 7.19 22.37 0.16 3.89 15 21 F -0.13 -3.36 15.74 44.97 0.71 -2.65 15 22 H 0.27 15.36 8.31 -92.71 -0.77 14.59 15 23 H 0.04 1.66 7.20 -2.39 -0.02 1.65 15 24 H 0.04 1.73 7.57 -2.39 -0.02 1.71 15 25 H 0.14 4.75 7.59 -2.39 -0.02 4.73 15 26 H 0.15 4.73 8.14 -2.39 -0.02 4.71 15 27 H 0.17 3.70 7.21 -2.91 -0.02 3.67 15 28 H 0.20 0.66 8.06 -2.91 -0.02 0.64 15 29 H 0.19 1.30 8.06 -2.91 -0.02 1.27 15 Total: -1.00 -72.82 278.89 2.54 -70.28 By element: Atomic # 1 Polarization: 1.90 SS G_CDS: 1.13 Total: 3.03 kcal Atomic # 6 Polarization: -65.82 SS G_CDS: 2.36 Total: -63.46 kcal Atomic # 7 Polarization: -57.38 SS G_CDS: 0.30 Total: -57.08 kcal Atomic # 8 Polarization: -72.84 SS G_CDS: -4.35 Total: -77.19 kcal Atomic # 9 Polarization: -5.73 SS G_CDS: 1.48 Total: -4.24 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 1.88 Total: 45.18 kcal Atomic # 16 Polarization: 83.75 SS G_CDS: -0.27 Total: 83.48 kcal Total: -72.82 2.54 -70.28 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084252504.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.776 kcal (2) G-P(sol) polarization free energy of solvation -72.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds