Wall clock time and date at job start Mon Mar 30 2020 01:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 H 1.09008 * 109.47017 * 55.00082 * 3 2 1 5 5 C 1.53001 * 109.47242 * 295.00551 * 3 2 1 6 6 C 1.52994 * 109.47404 * 175.00005 * 3 2 1 7 7 H 1.09008 * 109.46970 * 60.00049 * 6 3 2 8 8 C 1.53001 * 109.47368 * 300.00470 * 6 3 2 9 9 N 1.46905 * 109.47569 * 179.97438 * 6 3 2 10 10 C 1.46891 * 111.00265 * 205.00023 * 9 6 3 11 11 H 1.08997 * 109.47051 * 35.00839 * 10 9 6 12 12 C 1.53005 * 109.47064 * 155.00357 * 10 9 6 13 13 C 1.50706 * 109.47039 * 295.00221 * 12 10 9 14 14 H 1.07996 * 119.99782 * 359.97438 * 13 12 10 15 15 C 1.37870 * 119.99943 * 179.97438 * 13 12 10 16 16 N 1.31514 * 120.00285 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 119.99856 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.46982 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.46935 * 120.00243 * 17 15 13 20 20 H 1.48502 * 109.47219 * 239.99891 * 17 15 13 21 21 C 1.50700 * 109.47305 * 275.00135 * 10 9 6 22 22 C 1.38232 * 120.00120 * 319.73029 * 21 10 9 23 23 C 1.38237 * 119.99894 * 179.80959 * 22 21 10 24 24 C 1.38233 * 119.99803 * 0.39896 * 23 22 21 25 25 C 1.38235 * 120.00356 * 359.85469 * 24 23 22 26 26 C 1.38235 * 119.99656 * 359.95461 * 25 24 23 27 27 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 29 29 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 30 30 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 31 31 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 32 32 H 1.08996 * 109.47271 * 180.02562 * 5 3 2 33 33 H 1.09008 * 109.46731 * 299.99706 * 5 3 2 34 34 H 1.08998 * 109.47430 * 59.99652 * 5 3 2 35 35 H 1.08996 * 109.47271 * 59.99107 * 8 6 3 36 36 H 1.09002 * 109.46772 * 180.02562 * 8 6 3 37 37 H 1.09008 * 109.46711 * 299.99168 * 8 6 3 38 38 H 1.00900 * 110.99251 * 81.04461 * 9 6 3 39 39 H 1.09005 * 109.47247 * 54.99883 * 12 10 9 40 40 H 1.08999 * 109.47284 * 175.00169 * 12 10 9 41 41 H 0.97005 * 120.00374 * 179.97438 * 16 15 13 42 42 H 1.08002 * 120.00106 * 359.97438 * 22 21 10 43 43 H 1.08001 * 119.99907 * 180.22446 * 23 22 21 44 44 H 1.08001 * 119.99487 * 179.83670 * 24 23 22 45 45 H 1.07994 * 119.99981 * 179.97438 * 25 24 23 46 46 H 1.08000 * 119.99915 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 1.6351 2.1266 -1.3073 6 6 3.5647 1.4444 0.1257 7 1 3.9994 0.9054 -0.7162 8 6 3.9696 0.7603 1.4330 9 7 4.0545 2.8294 0.1251 10 6 5.4449 2.8959 -0.3440 11 1 5.6040 2.1440 -1.1168 12 6 5.7229 4.2859 -0.9199 13 6 4.8769 4.4988 -2.1488 14 1 4.2082 3.7204 -2.4855 15 6 4.9565 5.6872 -2.8432 16 7 5.7704 6.6353 -2.4329 17 14 3.9084 5.9508 -4.3668 18 1 3.0833 4.7414 -4.6153 19 1 3.0193 7.1221 -4.1594 20 1 4.7889 6.1988 -5.5366 21 6 6.3776 2.6350 0.8106 22 6 6.1052 3.1728 2.0545 23 6 6.9587 2.9302 3.1145 24 6 8.0890 2.1564 2.9285 25 6 8.3643 1.6229 1.6833 26 6 7.5086 1.8623 0.6243 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8934 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.9988 3.1541 -1.3075 33 1 2.0698 1.5875 -2.1492 34 1 0.5488 2.1253 -1.3968 35 1 3.6063 -0.2673 1.4330 36 1 5.0559 0.7621 1.5227 37 1 3.5350 1.2994 2.2749 38 1 3.9608 3.2463 1.0391 39 1 5.4787 5.0434 -0.1751 40 1 6.7769 4.3647 -1.1863 41 1 5.8268 7.4713 -2.9216 42 1 5.2240 3.7805 2.1988 43 1 6.7439 3.3474 4.0872 44 1 8.7572 1.9691 3.7561 45 1 9.2475 1.0188 1.5380 46 1 7.7235 1.4451 -0.3484 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000090665428.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:48 Heat of formation + Delta-G solvation = 0.062715 kcal Electronic energy + Delta-G solvation = -22126.983891 eV Core-core repulsion = 19208.345937 eV Total energy + Delta-G solvation = -2918.637955 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.44921 -37.64445 -35.13083 -32.76851 -31.47931 -30.58155 -29.26954 -28.88923 -27.63553 -24.40467 -24.11877 -22.48585 -21.87827 -21.40981 -19.87898 -19.17348 -16.85376 -16.02457 -15.19367 -14.96491 -14.81031 -14.50068 -14.24588 -14.06239 -13.91725 -13.14826 -12.99249 -12.88730 -12.65308 -12.40028 -12.24722 -12.03905 -11.82538 -11.54485 -11.24765 -11.20853 -10.99986 -10.93225 -10.78830 -10.66439 -10.49305 -10.23501 -10.19372 -10.12396 -9.98511 -9.56357 -8.93988 -8.59925 -8.24462 -8.13722 -7.59435 -5.86158 -3.83953 1.72296 1.73443 3.39226 3.46954 3.51625 4.13918 4.58100 4.69362 5.05306 5.16785 5.19867 5.21324 5.30418 5.35213 5.41083 5.48238 5.51560 5.63369 5.66417 5.79723 5.85276 5.88241 5.88906 5.98999 6.06421 6.13382 6.18627 6.22896 6.27847 6.32132 6.36550 6.40742 6.51469 6.57556 6.76937 6.78639 6.79590 6.88665 7.02291 7.10009 7.34990 7.59511 7.71565 8.03771 8.09027 8.19218 8.59374 9.21712 9.77246 11.25818 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.009741 B = 0.007926 C = 0.004667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2873.733862 B = 3531.797961 C = 5997.993753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C -0.075 4.075 4 H 0.063 0.937 5 C -0.140 4.140 6 C 0.088 3.912 7 H 0.071 0.929 8 C -0.184 4.184 9 N -0.651 5.651 10 C 0.130 3.870 11 H 0.073 0.927 12 C 0.041 3.959 13 C -0.485 4.485 14 H 0.062 0.938 15 C 0.051 3.949 16 N -0.903 5.903 17 Si 0.887 3.113 18 H -0.273 1.273 19 H -0.287 1.287 20 H -0.288 1.288 21 C -0.084 4.084 22 C -0.117 4.117 23 C -0.119 4.119 24 C -0.139 4.139 25 C -0.121 4.121 26 C -0.120 4.120 27 H 0.046 0.954 28 H 0.050 0.950 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.082 0.918 33 H 0.044 0.956 34 H 0.039 0.961 35 H 0.053 0.947 36 H 0.057 0.943 37 H 0.050 0.950 38 H 0.332 0.668 39 H 0.018 0.982 40 H 0.017 0.983 41 H 0.256 0.744 42 H 0.119 0.881 43 H 0.114 0.886 44 H 0.113 0.887 45 H 0.114 0.886 46 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.799 -12.565 9.348 15.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.095 4.095 4 H 0.081 0.919 5 C -0.197 4.197 6 C -0.022 4.022 7 H 0.089 0.911 8 C -0.243 4.243 9 N -0.280 5.280 10 C 0.020 3.980 11 H 0.091 0.909 12 C 0.004 3.996 13 C -0.524 4.524 14 H 0.080 0.920 15 C -0.149 4.149 16 N -0.544 5.544 17 Si 0.716 3.284 18 H -0.197 1.197 19 H -0.214 1.214 20 H -0.215 1.215 21 C -0.086 4.086 22 C -0.136 4.136 23 C -0.138 4.138 24 C -0.157 4.157 25 C -0.139 4.139 26 C -0.138 4.138 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.100 0.900 33 H 0.063 0.937 34 H 0.058 0.942 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.069 0.931 38 H 0.152 0.848 39 H 0.036 0.964 40 H 0.035 0.965 41 H 0.066 0.934 42 H 0.137 0.863 43 H 0.132 0.868 44 H 0.131 0.869 45 H 0.132 0.868 46 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -3.037 -12.228 8.664 15.291 hybrid contribution 0.079 -0.059 0.019 0.100 sum -2.959 -12.287 8.683 15.334 Atomic orbital electron populations 1.21799 0.96329 1.00812 1.01891 1.21664 0.95516 0.97317 1.01528 1.21077 0.94651 0.94681 0.99049 0.91886 1.21761 0.98980 1.03092 0.95858 1.21643 0.94736 0.89719 0.96138 0.91058 1.22685 1.01805 1.00820 0.99023 1.60695 1.20502 1.15331 1.31508 1.21019 0.83599 1.02023 0.91341 0.90917 1.19098 0.96489 0.88194 0.95802 1.21156 1.22142 1.00192 1.08897 0.92003 1.24990 0.95811 0.96400 0.97670 1.69981 1.38151 1.06054 1.40198 0.86610 0.80392 0.78035 0.83383 1.19732 1.21353 1.21504 1.21180 0.96653 0.94461 0.96282 1.20943 1.00001 0.99868 0.92777 1.21041 0.95164 0.98951 0.98596 1.20983 0.97861 0.99689 0.97148 1.21064 0.99214 1.00309 0.93315 1.21072 0.94819 0.99302 0.98655 0.93474 0.93075 0.92411 0.92239 0.92344 0.89953 0.93651 0.94243 0.92812 0.92372 0.93107 0.84848 0.96354 0.96492 0.93421 0.86304 0.86751 0.86923 0.86785 0.86403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.67 37.16 0.36 -1.24 16 2 C -0.12 -1.43 5.19 -26.73 -0.14 -1.57 16 3 C -0.08 -1.04 2.16 -90.62 -0.20 -1.24 16 4 H 0.06 0.88 8.14 -51.92 -0.42 0.46 16 5 C -0.14 -2.20 8.79 37.16 0.33 -1.87 16 6 C 0.09 1.32 2.17 -67.71 -0.15 1.17 16 7 H 0.07 1.15 7.43 -51.92 -0.39 0.76 16 8 C -0.18 -2.44 8.28 37.16 0.31 -2.13 16 9 N -0.65 -11.51 4.99 -100.96 -0.50 -12.01 16 10 C 0.13 2.54 2.17 -68.87 -0.15 2.39 16 11 H 0.07 1.46 7.29 -51.93 -0.38 1.09 16 12 C 0.04 1.04 4.63 -27.88 -0.13 0.91 16 13 C -0.49 -13.29 8.84 -34.44 -0.30 -13.60 16 14 H 0.06 1.68 7.74 -52.49 -0.41 1.27 16 15 C 0.05 1.44 5.46 -17.82 -0.10 1.35 16 16 N -0.90 -27.24 13.29 55.43 0.74 -26.50 16 17 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 18 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 20 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 21 C -0.08 -1.45 2.92 -104.62 -0.31 -1.75 16 22 C -0.12 -1.88 8.43 -39.58 -0.33 -2.21 16 23 C -0.12 -1.69 10.05 -39.58 -0.40 -2.08 16 24 C -0.14 -1.87 10.05 -39.58 -0.40 -2.27 16 25 C -0.12 -1.70 10.05 -39.58 -0.40 -2.10 16 26 C -0.12 -1.92 9.65 -39.58 -0.38 -2.30 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.63 6.56 -51.93 -0.34 0.29 16 30 H 0.06 0.66 6.17 -51.93 -0.32 0.34 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.08 1.55 7.60 -51.93 -0.39 1.15 16 33 H 0.04 0.73 8.14 -51.92 -0.42 0.30 16 34 H 0.04 0.55 6.56 -51.93 -0.34 0.21 16 35 H 0.05 0.64 6.32 -51.93 -0.33 0.31 16 36 H 0.06 0.84 5.94 -51.93 -0.31 0.53 16 37 H 0.05 0.65 8.13 -51.92 -0.42 0.23 16 38 H 0.33 5.62 6.10 -39.29 -0.24 5.38 16 39 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.26 7.36 8.31 -40.82 -0.34 7.03 16 42 H 0.12 1.86 6.53 -52.49 -0.34 1.52 16 43 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 44 H 0.11 1.23 8.06 -52.49 -0.42 0.81 16 45 H 0.11 1.33 8.06 -52.49 -0.42 0.90 16 46 H 0.12 1.79 8.04 -52.49 -0.42 1.37 16 LS Contribution 357.53 15.07 5.39 5.39 Total: -1.00 -29.23 357.53 -9.78 -39.01 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -7.99 Total: 5.76 kcal Atomic # 6 Polarization: -26.18 SS G_CDS: -2.38 Total: -28.56 kcal Atomic # 7 Polarization: -38.75 SS G_CDS: 0.23 Total: -38.52 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.23 -9.78 -39.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090665428.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.071 kcal (2) G-P(sol) polarization free energy of solvation -29.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds