Wall clock time and date at job start Mon Mar 30 2020 01:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 120.00302 * 2 1 4 4 H 1.48498 * 109.47514 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46807 * 299.99921 * 3 2 1 6 6 H 1.48502 * 109.47023 * 59.99822 * 3 2 1 7 7 C 1.37879 * 119.99811 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99797 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00344 * 359.97438 * 7 2 1 10 10 O 1.42899 * 109.47517 * 180.02562 * 9 7 2 11 11 C 1.35893 * 117.00392 * 180.02562 * 10 9 7 12 12 C 1.38736 * 120.05957 * 180.02562 * 11 10 9 13 13 C 1.38138 * 119.94337 * 180.30421 * 12 11 10 14 14 C 1.38271 * 120.05803 * 359.41293 * 13 12 11 15 15 S 1.76199 * 119.94634 * 180.30266 * 14 13 12 16 16 O 1.42107 * 106.40105 * 23.84314 * 15 14 13 17 17 O 1.42099 * 106.40478 * 156.76235 * 15 14 13 18 18 Cl 2.02003 * 107.22035 * 270.30641 * 15 14 13 19 19 C 1.38259 * 120.10889 * 0.60974 * 14 13 12 20 20 C 1.38146 * 120.05909 * 359.67363 * 19 14 13 21 21 H 0.96996 * 119.99983 * 0.02562 * 1 2 3 22 22 H 1.09002 * 109.46946 * 60.00437 * 9 7 2 23 23 H 1.09001 * 109.47141 * 300.00195 * 9 7 2 24 24 H 1.08002 * 120.02291 * 0.02562 * 12 11 10 25 25 H 1.08004 * 119.96766 * 179.69880 * 13 12 11 26 26 H 1.08006 * 119.97147 * 179.69573 * 19 14 13 27 27 H 1.07993 * 120.03340 * 180.02562 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 8 2.1796 -3.5853 -0.0005 11 6 1.6602 -4.8411 -0.0011 12 6 2.5042 -5.9422 -0.0006 13 6 1.9737 -7.2176 -0.0075 14 6 0.6027 -7.3975 -0.0026 15 16 -0.0708 -9.0257 -0.0034 16 8 0.9302 -9.8742 0.5421 17 8 -1.3795 -8.9189 0.5396 18 17 -0.2971 -9.5783 -1.9331 19 6 -0.2405 -6.3018 -0.0036 20 6 0.2849 -5.0242 -0.0026 21 1 -0.4850 0.8400 -0.0004 22 1 0.6241 -2.5567 -0.8903 23 1 0.6247 -2.5571 0.8897 24 1 3.5751 -5.8022 0.0007 25 1 2.6304 -8.0751 -0.0120 26 1 -1.3111 -6.4449 -0.0048 27 1 -0.3741 -4.1687 -0.0029 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095698235.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:50 Heat of formation + Delta-G solvation = -97.028501 kcal Electronic energy + Delta-G solvation = -16299.553846 eV Core-core repulsion = 13175.974681 eV Total energy + Delta-G solvation = -3123.579164 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 276.006 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.91408 -38.00747 -37.24361 -36.71606 -36.37969 -33.16251 -31.23306 -30.39586 -27.83977 -23.97299 -23.01724 -21.92505 -20.33377 -18.66471 -18.10527 -17.34440 -16.92713 -16.37300 -15.45149 -15.09360 -14.73982 -14.63799 -13.69764 -13.57886 -13.04567 -12.85794 -12.82813 -12.74201 -12.33235 -12.17250 -12.14899 -12.13563 -11.27382 -11.26229 -11.10223 -10.99553 -10.66022 -10.37607 -9.53109 -9.18714 -8.84382 -8.30802 -6.43845 -4.49289 -1.33900 0.78318 1.26659 1.88239 2.66567 3.11959 3.19182 3.23918 3.53499 3.56116 3.75672 4.23153 4.67310 4.75582 4.94175 5.15872 5.28411 5.52446 5.80352 5.92716 6.03960 6.25109 6.55380 6.69371 6.82593 7.44302 7.68929 8.01980 8.60387 9.17210 10.67168 Molecular weight = 276.01amu Principal moments of inertia in cm(-1) A = 0.046909 B = 0.003607 C = 0.003518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.753779 B = 7761.178633 C = 7956.598091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.062 3.938 3 Si 0.916 3.084 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.531 4.531 8 H 0.073 0.927 9 C 0.185 3.815 10 O -0.299 6.299 11 C 0.224 3.776 12 C -0.183 4.183 13 C 0.021 3.979 14 C -0.706 4.706 15 S 2.473 3.527 16 O -0.872 6.872 17 O -0.870 6.870 18 Cl -0.487 7.487 19 C 0.028 3.972 20 C -0.228 4.228 21 H 0.269 0.731 22 H 0.030 0.970 23 H 0.030 0.970 24 H 0.144 0.856 25 H 0.146 0.854 26 H 0.144 0.856 27 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.205 -14.532 -0.928 14.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.141 4.141 3 Si 0.743 3.257 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.568 4.568 8 H 0.092 0.908 9 C 0.113 3.887 10 O -0.209 6.209 11 C 0.172 3.828 12 C -0.203 4.203 13 C 0.001 3.999 14 C -0.801 4.801 15 S 2.571 3.429 16 O -0.870 6.870 17 O -0.869 6.869 18 Cl -0.486 7.486 19 C 0.008 3.992 20 C -0.248 4.248 21 H 0.079 0.921 22 H 0.048 0.952 23 H 0.047 0.953 24 H 0.162 0.838 25 H 0.164 0.836 26 H 0.161 0.839 27 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -0.062 -15.052 -0.931 15.081 hybrid contribution 0.281 1.620 0.019 1.644 sum 0.219 -13.432 -0.911 13.465 Atomic orbital electron populations 1.69934 1.06172 1.27924 1.48869 1.24947 0.95103 0.99708 0.94319 0.86141 0.79927 0.81730 0.77940 1.19282 1.20521 1.20518 1.20955 0.94401 0.88342 1.53149 0.90841 1.20931 0.88658 0.81452 0.97627 1.86217 1.39949 1.11866 1.82880 1.19735 0.91860 0.86950 0.84225 1.20572 1.00619 0.89893 1.09217 1.20612 0.92015 0.97823 0.89467 1.29092 1.03580 1.17011 1.30443 1.08805 0.77009 0.77962 0.79103 1.93718 1.58595 1.65245 1.69484 1.93725 1.36769 1.86888 1.69515 1.99045 1.97283 1.93518 1.58754 1.20684 0.99340 0.90876 0.88328 1.21631 0.95129 0.98572 1.09516 0.92092 0.95246 0.95265 0.83836 0.83640 0.83860 0.83150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.28 13.29 55.43 0.74 -23.55 15 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 15 3 Si 0.92 20.12 29.54 -169.99 -5.02 15.10 15 4 H -0.27 -5.80 7.11 56.52 0.40 -5.40 15 5 H -0.28 -6.06 7.11 56.52 0.40 -5.65 15 6 H -0.28 -6.06 7.11 56.52 0.40 -5.65 15 7 C -0.53 -14.05 9.43 -34.44 -0.32 -14.37 15 8 H 0.07 1.93 7.81 -52.49 -0.41 1.52 15 9 C 0.19 4.43 4.49 36.00 0.16 4.59 15 10 O -0.30 -6.34 10.12 -19.40 -0.20 -6.54 15 11 C 0.22 3.90 6.69 -39.21 -0.26 3.63 15 12 C -0.18 -2.60 9.99 -39.43 -0.39 -3.00 15 13 C 0.02 0.25 9.51 -39.61 -0.38 -0.12 15 14 C -0.71 -8.85 5.92 -39.56 -0.23 -9.08 15 15 S 2.47 28.48 6.06 -107.50 -0.65 27.83 15 16 O -0.87 -11.10 17.25 -57.17 -0.99 -12.09 15 17 O -0.87 -11.49 17.25 -57.17 -0.99 -12.48 15 18 Cl -0.49 -5.69 29.68 -51.86 -1.54 -7.23 15 19 C 0.03 0.37 9.51 -39.61 -0.38 0.00 15 20 C -0.23 -3.67 9.04 -39.43 -0.36 -4.03 15 21 H 0.27 6.87 8.31 -40.82 -0.34 6.54 15 22 H 0.03 0.72 7.66 -51.93 -0.40 0.32 15 23 H 0.03 0.72 7.67 -51.93 -0.40 0.32 15 24 H 0.14 1.77 8.06 -52.49 -0.42 1.35 15 25 H 0.15 1.36 7.62 -52.48 -0.40 0.96 15 26 H 0.14 1.60 7.61 -52.48 -0.40 1.20 15 27 H 0.15 2.49 6.30 -52.49 -0.33 2.16 15 LS Contribution 275.58 15.07 4.15 4.15 Total: -1.00 -29.33 275.58 -8.64 -37.98 By element: Atomic # 1 Polarization: -0.45 SS G_CDS: -1.89 Total: -2.34 kcal Atomic # 6 Polarization: -18.58 SS G_CDS: -2.26 Total: -20.84 kcal Atomic # 7 Polarization: -24.28 SS G_CDS: 0.74 Total: -23.55 kcal Atomic # 8 Polarization: -28.94 SS G_CDS: -2.17 Total: -31.10 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Atomic # 16 Polarization: 28.48 SS G_CDS: -0.65 Total: 27.83 kcal Atomic # 17 Polarization: -5.69 SS G_CDS: -1.54 Total: -7.23 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -29.33 -8.64 -37.98 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095698235.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.050 kcal (2) G-P(sol) polarization free energy of solvation -29.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds