Wall clock time and date at job start Mon Mar 30 2020 01:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 120.00302 * 2 1 4 4 H 1.48498 * 109.47514 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46807 * 299.99921 * 3 2 1 6 6 H 1.48502 * 109.47023 * 59.99822 * 3 2 1 7 7 C 1.37879 * 119.99811 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99797 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00344 * 359.97438 * 7 2 1 10 10 O 1.42899 * 109.47517 * 180.02562 * 9 7 2 11 11 C 1.35893 * 117.00392 * 180.02562 * 10 9 7 12 12 C 1.38736 * 120.05957 * 180.02562 * 11 10 9 13 13 C 1.38138 * 119.94337 * 180.30421 * 12 11 10 14 14 C 1.38271 * 120.05803 * 359.41293 * 13 12 11 15 15 S 1.76199 * 119.94634 * 180.30266 * 14 13 12 16 16 O 1.42107 * 106.40105 * 23.84314 * 15 14 13 17 17 O 1.42099 * 106.40478 * 156.76235 * 15 14 13 18 18 Cl 2.02003 * 107.22035 * 270.30641 * 15 14 13 19 19 C 1.38259 * 120.10889 * 0.60974 * 14 13 12 20 20 C 1.38146 * 120.05909 * 359.67363 * 19 14 13 21 21 H 0.96996 * 119.99983 * 0.02562 * 1 2 3 22 22 H 1.09002 * 109.46946 * 60.00437 * 9 7 2 23 23 H 1.09001 * 109.47141 * 300.00195 * 9 7 2 24 24 H 1.08002 * 120.02291 * 0.02562 * 12 11 10 25 25 H 1.08004 * 119.96766 * 179.69880 * 13 12 11 26 26 H 1.08006 * 119.97147 * 179.69573 * 19 14 13 27 27 H 1.07993 * 120.03340 * 180.02562 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 8 2.1796 -3.5853 -0.0005 11 6 1.6602 -4.8411 -0.0011 12 6 2.5042 -5.9422 -0.0006 13 6 1.9737 -7.2176 -0.0075 14 6 0.6027 -7.3975 -0.0026 15 16 -0.0708 -9.0257 -0.0034 16 8 0.9302 -9.8742 0.5421 17 8 -1.3795 -8.9189 0.5396 18 17 -0.2971 -9.5783 -1.9331 19 6 -0.2405 -6.3018 -0.0036 20 6 0.2849 -5.0242 -0.0026 21 1 -0.4850 0.8400 -0.0004 22 1 0.6241 -2.5567 -0.8903 23 1 0.6247 -2.5571 0.8897 24 1 3.5751 -5.8022 0.0007 25 1 2.6304 -8.0751 -0.0120 26 1 -1.3111 -6.4449 -0.0048 27 1 -0.3741 -4.1687 -0.0029 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095698235.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:49 Heat of formation + Delta-G solvation = -116.864098 kcal Electronic energy + Delta-G solvation = -16300.413982 eV Core-core repulsion = 13175.974681 eV Total energy + Delta-G solvation = -3124.439300 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 276.006 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.22341 -39.03914 -38.61836 -37.74444 -37.38393 -35.12761 -32.39975 -31.68383 -29.66349 -25.64949 -24.19298 -23.34422 -21.34689 -19.77749 -19.27850 -18.77305 -18.50930 -17.59898 -16.90314 -16.69988 -16.32137 -15.83593 -14.92397 -14.76108 -14.51775 -14.10962 -13.91054 -13.80827 -13.73549 -13.37365 -13.16919 -13.12011 -13.05356 -12.95707 -12.48859 -12.29337 -12.23738 -12.04059 -11.42690 -10.78254 -10.29984 -9.70094 -8.43600 -6.57553 -2.34471 -0.37029 0.13006 0.87103 1.39792 1.39903 1.54276 1.66883 2.17893 2.38620 2.51066 2.54514 2.92469 3.56767 3.68685 3.98055 4.17659 4.38603 4.57951 4.72126 4.81233 4.86360 4.88973 5.16677 5.42804 5.53964 5.75323 6.35162 6.62565 7.14237 8.68292 Molecular weight = 276.01amu Principal moments of inertia in cm(-1) A = 0.046909 B = 0.003607 C = 0.003518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.753779 B = 7761.178633 C = 7956.598091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.014 3.986 3 Si 0.985 3.015 4 H -0.263 1.263 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.558 4.558 8 H 0.069 0.931 9 C 0.203 3.797 10 O -0.320 6.320 11 C 0.185 3.815 12 C -0.181 4.181 13 C 0.029 3.971 14 C -0.701 4.701 15 S 2.509 3.491 16 O -0.875 6.875 17 O -0.882 6.882 18 Cl -0.478 7.478 19 C 0.029 3.971 20 C -0.243 4.243 21 H 0.274 0.726 22 H 0.014 0.986 23 H 0.013 0.987 24 H 0.162 0.838 25 H 0.183 0.817 26 H 0.166 0.834 27 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.816 -15.922 -1.058 15.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.186 4.186 3 Si 0.808 3.192 4 H -0.187 1.187 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.596 4.596 8 H 0.087 0.913 9 C 0.130 3.870 10 O -0.232 6.232 11 C 0.136 3.864 12 C -0.200 4.200 13 C 0.010 3.990 14 C -0.795 4.795 15 S 2.605 3.395 16 O -0.874 6.874 17 O -0.881 6.881 18 Cl -0.477 7.477 19 C 0.009 3.991 20 C -0.263 4.263 21 H 0.083 0.917 22 H 0.031 0.969 23 H 0.030 0.970 24 H 0.179 0.821 25 H 0.201 0.799 26 H 0.184 0.816 27 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 0.552 -16.458 -1.060 16.502 hybrid contribution 0.033 1.787 0.036 1.787 sum 0.585 -14.672 -1.024 14.719 Atomic orbital electron populations 1.70029 1.07625 1.29099 1.49318 1.25896 0.95988 1.03243 0.93470 0.85097 0.78708 0.77111 0.78311 1.18697 1.19684 1.19696 1.21320 0.94501 0.89972 1.53785 0.91301 1.20425 0.88428 0.82155 0.95976 1.86127 1.39318 1.12853 1.84913 1.20118 0.93075 0.86181 0.87036 1.20842 1.01303 0.89550 1.08348 1.21067 0.92400 0.98094 0.87461 1.29423 1.03905 1.17639 1.28498 1.07897 0.76228 0.76842 0.78545 1.93712 1.58887 1.65000 1.69790 1.93713 1.37480 1.86833 1.70076 1.99049 1.97239 1.93308 1.58122 1.20918 1.00774 0.90003 0.87386 1.21593 0.94658 0.99381 1.10655 0.91651 0.96865 0.96967 0.82081 0.79932 0.81609 0.84822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.43 13.29 21.45 0.28 -51.14 15 2 C 0.01 0.75 5.46 84.66 0.46 1.22 15 3 Si 0.99 41.40 29.54 68.60 2.03 43.42 15 4 H -0.26 -10.71 7.11 99.48 0.71 -10.00 15 5 H -0.27 -11.01 7.11 99.48 0.71 -10.30 15 6 H -0.27 -11.02 7.11 99.48 0.71 -10.31 15 7 C -0.56 -30.57 9.43 25.60 0.24 -30.33 15 8 H 0.07 3.72 7.81 -2.91 -0.02 3.70 15 9 C 0.20 10.27 4.49 71.23 0.32 10.59 15 10 O -0.32 -14.24 10.12 -92.34 -0.93 -15.18 15 11 C 0.19 6.61 6.69 22.51 0.15 6.76 15 12 C -0.18 -4.94 9.99 22.37 0.22 -4.72 15 13 C 0.03 0.63 9.51 22.25 0.21 0.85 15 14 C -0.70 -15.95 5.92 22.28 0.13 -15.82 15 15 S 2.51 50.53 6.06 -56.49 -0.34 50.19 15 16 O -0.88 -19.28 17.25 -128.00 -2.21 -21.49 15 17 O -0.88 -21.01 17.25 -128.00 -2.21 -23.22 15 18 Cl -0.48 -9.85 29.68 -2.72 -0.08 -9.93 15 19 C 0.03 0.75 9.51 22.25 0.21 0.96 15 20 C -0.24 -8.05 9.04 22.37 0.20 -7.85 15 21 H 0.27 14.19 8.31 -92.71 -0.77 13.42 15 22 H 0.01 0.71 7.66 -2.39 -0.02 0.69 15 23 H 0.01 0.66 7.67 -2.39 -0.02 0.64 15 24 H 0.16 3.74 8.06 -2.91 -0.02 3.71 15 25 H 0.18 2.63 7.62 -2.91 -0.02 2.61 15 26 H 0.17 3.46 7.61 -2.91 -0.02 3.44 15 27 H 0.13 4.80 6.30 -2.91 -0.02 4.78 15 Total: -1.00 -63.23 275.58 -0.10 -63.33 By element: Atomic # 1 Polarization: 1.15 SS G_CDS: 1.20 Total: 2.36 kcal Atomic # 6 Polarization: -40.50 SS G_CDS: 2.16 Total: -38.34 kcal Atomic # 7 Polarization: -51.43 SS G_CDS: 0.28 Total: -51.14 kcal Atomic # 8 Polarization: -54.54 SS G_CDS: -5.35 Total: -59.89 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 2.03 Total: 43.42 kcal Atomic # 16 Polarization: 50.53 SS G_CDS: -0.34 Total: 50.19 kcal Atomic # 17 Polarization: -9.85 SS G_CDS: -0.08 Total: -9.93 kcal Total: -63.23 -0.10 -63.33 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095698235.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.531 kcal (2) G-P(sol) polarization free energy of solvation -63.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds