Wall clock time and date at job start Mon Mar 30 2020 01:31:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47277 * 2 1 4 4 N 1.46906 * 109.46733 * 240.00579 * 2 1 3 5 5 C 1.46902 * 111.00066 * 85.00038 * 4 2 1 6 6 C 1.53000 * 109.46969 * 179.97438 * 5 4 2 7 7 C 1.53000 * 109.46791 * 179.97438 * 6 5 4 8 8 C 1.50702 * 109.46942 * 180.02562 * 7 6 5 9 9 H 1.07999 * 120.00004 * 0.02562 * 8 7 6 10 10 C 1.37875 * 120.00050 * 180.02562 * 8 7 6 11 11 N 1.31515 * 119.99905 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 120.00066 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47548 * 90.00008 * 12 10 8 14 14 H 1.48501 * 109.47075 * 210.00197 * 12 10 8 15 15 H 1.48506 * 109.47254 * 329.99705 * 12 10 8 16 16 C 1.52994 * 109.47515 * 120.00615 * 2 1 3 17 17 C 1.53003 * 109.47174 * 65.16672 * 16 2 1 18 18 C 1.53002 * 109.46911 * 305.17186 * 16 2 1 19 19 C 1.50692 * 109.47429 * 185.17369 * 16 2 1 20 20 C 1.38240 * 120.00238 * 186.12396 * 19 16 2 21 21 C 1.38233 * 120.00159 * 180.02562 * 20 19 16 22 22 C 1.38237 * 120.00138 * 359.97438 * 21 20 19 23 23 C 1.38238 * 119.99788 * 0.26493 * 22 21 20 24 24 C 1.38237 * 120.00059 * 6.13670 * 19 16 2 25 25 H 1.08996 * 109.47298 * 185.48684 * 1 2 3 26 26 H 1.09001 * 109.46564 * 305.48484 * 1 2 3 27 27 H 1.08998 * 109.47274 * 65.48126 * 1 2 3 28 28 H 1.00897 * 110.99788 * 321.04520 * 4 2 1 29 29 H 1.09005 * 109.47022 * 299.99837 * 5 4 2 30 30 H 1.08998 * 109.46942 * 60.00017 * 5 4 2 31 31 H 1.08988 * 109.47264 * 300.00172 * 6 5 4 32 32 H 1.09008 * 109.46789 * 60.00434 * 6 5 4 33 33 H 1.08996 * 109.48037 * 300.00306 * 7 6 5 34 34 H 1.08998 * 109.46678 * 60.00694 * 7 6 5 35 35 H 0.97006 * 119.99590 * 179.97438 * 11 10 8 36 36 H 1.09000 * 109.47279 * 180.02562 * 17 16 2 37 37 H 1.09000 * 109.47229 * 300.00409 * 17 16 2 38 38 H 1.09007 * 109.46945 * 60.00556 * 17 16 2 39 39 H 1.09000 * 109.47017 * 300.00007 * 18 16 2 40 40 H 1.09000 * 109.47260 * 59.99733 * 18 16 2 41 41 H 1.09000 * 109.46935 * 179.97438 * 18 16 2 42 42 H 1.07997 * 119.99671 * 359.97438 * 20 19 16 43 43 H 1.08004 * 120.00105 * 179.97438 * 21 20 19 44 44 H 1.07995 * 119.99833 * 179.97438 * 22 21 20 45 45 H 1.08000 * 119.99849 * 179.71910 * 23 22 21 46 46 H 1.07997 * 119.99598 * 0.02562 * 24 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6924 -1.1996 5 6 2.0824 0.2228 -2.3470 6 6 2.5960 -0.5326 -3.5743 7 6 2.6608 0.4205 -4.7695 8 6 3.1662 -0.3237 -5.9785 9 1 3.4157 -1.3717 -5.9023 10 6 3.3099 0.3333 -7.1821 11 7 3.0064 1.6096 -7.2749 12 14 3.9356 -0.5893 -8.6810 13 1 2.7863 -1.1713 -9.4196 14 1 4.6705 0.3480 -9.5680 15 1 4.8477 -1.6780 -8.2471 16 6 2.0401 -0.7213 1.2491 17 6 1.6390 -2.1965 1.1857 18 6 1.4267 -0.0792 2.4950 19 6 3.5415 -0.6113 1.3148 20 6 4.2427 -1.2951 2.2905 21 6 5.6200 -1.1938 2.3511 22 6 6.2963 -0.4091 1.4357 23 6 5.5947 0.2786 0.4631 24 6 4.2178 0.1735 0.3996 25 1 -0.3634 -1.0229 0.0983 26 1 -0.3632 0.5966 0.8368 27 1 -0.3634 0.4265 -0.9350 28 1 1.4494 -1.4978 -1.4102 29 1 1.0869 0.6165 -2.5525 30 1 2.7588 1.0463 -2.1182 31 1 3.5914 -0.9260 -3.3685 32 1 1.9198 -1.3564 -3.8032 33 1 1.6652 0.8136 -4.9752 34 1 3.3367 1.2444 -4.5408 35 1 3.1079 2.0719 -8.1216 36 1 2.0020 -2.7103 2.0758 37 1 0.5529 -2.2760 1.1382 38 1 2.0760 -2.6540 0.2980 39 1 1.7124 0.9717 2.5402 40 1 0.3406 -0.1587 2.4475 41 1 1.7897 -0.5934 3.3849 42 1 3.7143 -1.9078 3.0058 43 1 6.1677 -1.7277 3.1136 44 1 7.3722 -0.3297 1.4833 45 1 6.1227 0.8952 -0.2492 46 1 3.6700 0.7082 -0.3622 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000118955432.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:10 Heat of formation + Delta-G solvation = 1.322471 kcal Electronic energy + Delta-G solvation = -21589.919515 eV Core-core repulsion = 18671.336187 eV Total energy + Delta-G solvation = -2918.583327 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.10718 -37.59295 -35.14109 -33.20982 -31.40842 -30.69488 -29.94876 -28.40246 -27.33435 -25.89174 -24.21160 -22.40173 -22.35065 -21.30418 -20.20981 -18.55898 -17.09498 -16.25183 -15.36899 -15.11299 -14.96764 -14.90613 -14.38484 -14.18123 -13.89236 -13.55137 -13.37558 -13.06938 -12.64558 -12.42019 -12.27596 -12.16460 -11.94012 -11.76864 -11.71857 -11.43379 -11.28956 -11.09167 -10.93711 -10.84771 -10.54528 -10.46272 -10.44030 -10.19845 -9.65751 -9.29168 -9.02085 -8.70359 -8.50218 -8.31868 -8.03351 -5.97197 -3.98977 1.55852 1.63095 3.33833 3.39955 3.43996 3.98864 4.34682 4.50189 4.58675 4.74346 5.11300 5.13197 5.17830 5.25094 5.28228 5.30030 5.35960 5.38753 5.56431 5.60706 5.66461 5.72996 5.75329 5.81704 5.87092 5.89058 5.97888 5.99877 6.05892 6.17544 6.24767 6.28561 6.36751 6.39542 6.64853 6.73954 6.76473 6.84186 6.89656 7.17551 7.21590 7.41587 7.68964 7.71885 7.86978 8.03560 8.47161 9.08306 9.64953 11.14254 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.019643 B = 0.003881 C = 0.003464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.088610 B = 7212.445618 C = 8081.613376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.089 3.911 3 H 0.078 0.922 4 N -0.680 5.680 5 C 0.058 3.942 6 C -0.106 4.106 7 C 0.022 3.978 8 C -0.517 4.517 9 H 0.054 0.946 10 C 0.056 3.944 11 N -0.897 5.897 12 Si 0.891 3.109 13 H -0.281 1.281 14 H -0.287 1.287 15 H -0.274 1.274 16 C -0.012 4.012 17 C -0.139 4.139 18 C -0.141 4.141 19 C -0.055 4.055 20 C -0.123 4.123 21 C -0.129 4.129 22 C -0.129 4.129 23 C -0.122 4.122 24 C -0.091 4.091 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.056 0.944 28 H 0.338 0.662 29 H 0.024 0.976 30 H 0.064 0.936 31 H 0.055 0.945 32 H 0.043 0.957 33 H 0.013 0.987 34 H 0.015 0.985 35 H 0.260 0.740 36 H 0.051 0.949 37 H 0.054 0.946 38 H 0.068 0.932 39 H 0.054 0.946 40 H 0.060 0.940 41 H 0.055 0.945 42 H 0.113 0.887 43 H 0.113 0.887 44 H 0.114 0.886 45 H 0.118 0.882 46 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.586 -3.965 21.764 22.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.021 4.021 3 H 0.096 0.904 4 N -0.310 5.310 5 C -0.070 4.070 6 C -0.144 4.144 7 C -0.015 4.015 8 C -0.556 4.556 9 H 0.073 0.927 10 C -0.145 4.145 11 N -0.537 5.537 12 Si 0.719 3.281 13 H -0.207 1.207 14 H -0.212 1.212 15 H -0.199 1.199 16 C -0.013 4.013 17 C -0.196 4.196 18 C -0.199 4.199 19 C -0.055 4.055 20 C -0.141 4.141 21 C -0.147 4.147 22 C -0.148 4.148 23 C -0.140 4.140 24 C -0.108 4.108 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.075 0.925 28 H 0.156 0.844 29 H 0.042 0.958 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.062 0.938 33 H 0.031 0.969 34 H 0.033 0.967 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.087 0.913 39 H 0.074 0.926 40 H 0.079 0.921 41 H 0.074 0.926 42 H 0.131 0.869 43 H 0.131 0.869 44 H 0.132 0.868 45 H 0.136 0.864 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -0.919 -3.735 21.791 22.128 hybrid contribution -0.545 -0.333 -1.203 1.362 sum -1.464 -4.068 20.589 21.038 Atomic orbital electron populations 1.22611 0.97490 1.02233 1.02159 1.21573 0.92258 0.97824 0.90484 0.90410 1.60733 1.56660 1.09884 1.03760 1.22150 0.98935 0.95441 0.90471 1.21601 1.00064 0.98854 0.93852 1.19058 0.96922 0.94327 0.91206 1.21261 1.43405 0.96380 0.94539 0.92724 1.25021 0.95663 0.94865 0.98940 1.69970 1.49078 1.08966 1.25641 0.86612 0.78958 0.79674 0.82873 1.20728 1.21246 1.19854 1.19474 0.91141 0.96201 0.94483 1.21901 1.00731 0.94600 1.02393 1.21959 1.00574 1.00695 0.96632 1.19622 0.94501 0.96512 0.94882 1.20896 0.94031 1.00240 0.98889 1.20996 0.94402 0.99876 0.99431 1.21072 0.99457 0.98136 0.96085 1.21218 0.94715 0.99781 0.98332 1.21313 0.93934 0.97984 0.97601 0.92170 0.92116 0.92473 0.84366 0.95778 0.91738 0.92586 0.93774 0.96912 0.96654 0.93081 0.93009 0.92690 0.91294 0.92642 0.92109 0.92580 0.86864 0.86855 0.86801 0.86382 0.85080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.93 8.38 37.16 0.31 -1.62 16 2 C 0.09 1.04 1.21 -67.71 -0.08 0.95 16 3 H 0.08 0.98 6.53 -51.93 -0.34 0.64 16 4 N -0.68 -9.37 4.30 -106.72 -0.46 -9.83 16 5 C 0.06 0.98 5.19 -3.82 -0.02 0.96 16 6 C -0.11 -2.19 5.41 -26.73 -0.14 -2.33 16 7 C 0.02 0.58 4.97 -27.88 -0.14 0.45 16 8 C -0.52 -14.88 9.11 -34.44 -0.31 -15.19 16 9 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 10 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 11 N -0.90 -27.25 13.29 55.43 0.74 -26.52 16 12 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 13 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 14 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 15 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 16 C -0.01 -0.13 0.46 -155.66 -0.07 -0.20 16 17 C -0.14 -1.39 7.60 37.16 0.28 -1.11 16 18 C -0.14 -1.27 7.85 37.16 0.29 -0.98 16 19 C -0.06 -0.68 4.64 -104.63 -0.49 -1.16 16 20 C -0.12 -1.41 8.77 -39.58 -0.35 -1.75 16 21 C -0.13 -1.46 10.05 -39.58 -0.40 -1.86 16 22 C -0.13 -1.55 10.05 -39.58 -0.40 -1.95 16 23 C -0.12 -1.63 10.05 -39.58 -0.40 -2.02 16 24 C -0.09 -1.24 8.51 -39.58 -0.34 -1.58 16 25 H 0.06 0.58 6.33 -51.93 -0.33 0.25 16 26 H 0.06 0.56 6.68 -51.93 -0.35 0.21 16 27 H 0.06 0.66 7.35 -51.93 -0.38 0.28 16 28 H 0.34 4.52 7.70 -39.29 -0.30 4.21 16 29 H 0.02 0.41 7.36 -51.93 -0.38 0.03 16 30 H 0.06 1.10 6.95 -51.93 -0.36 0.74 16 31 H 0.06 1.20 8.14 -51.94 -0.42 0.77 16 32 H 0.04 0.90 8.14 -51.92 -0.42 0.47 16 33 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 36 H 0.05 0.47 7.07 -51.93 -0.37 0.11 16 37 H 0.05 0.49 6.46 -51.93 -0.34 0.16 16 38 H 0.07 0.79 7.13 -51.93 -0.37 0.42 16 39 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.49 6.47 -51.93 -0.34 0.15 16 41 H 0.06 0.47 7.78 -51.93 -0.40 0.07 16 42 H 0.11 1.10 7.11 -52.49 -0.37 0.73 16 43 H 0.11 1.03 8.06 -52.48 -0.42 0.61 16 44 H 0.11 1.14 8.06 -52.49 -0.42 0.72 16 45 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 46 H 0.13 1.90 4.01 -52.49 -0.21 1.69 16 LS Contribution 351.98 15.07 5.30 5.30 Total: -1.00 -30.12 351.98 -9.54 -39.67 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -7.76 Total: 2.33 kcal Atomic # 6 Polarization: -25.54 SS G_CDS: -2.34 Total: -27.88 kcal Atomic # 7 Polarization: -36.62 SS G_CDS: 0.28 Total: -36.35 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.12 -9.54 -39.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000118955432.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.988 kcal (2) G-P(sol) polarization free energy of solvation -30.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds