Wall clock time and date at job start Mon Mar 30 2020 01:31:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47277 * 2 1 4 4 N 1.46906 * 109.46733 * 240.00579 * 2 1 3 5 5 C 1.46902 * 111.00066 * 85.00038 * 4 2 1 6 6 C 1.53000 * 109.46969 * 179.97438 * 5 4 2 7 7 C 1.53000 * 109.46791 * 179.97438 * 6 5 4 8 8 C 1.50702 * 109.46942 * 180.02562 * 7 6 5 9 9 H 1.07999 * 120.00004 * 0.02562 * 8 7 6 10 10 C 1.37875 * 120.00050 * 180.02562 * 8 7 6 11 11 N 1.31515 * 119.99905 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 120.00066 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47548 * 90.00008 * 12 10 8 14 14 H 1.48501 * 109.47075 * 210.00197 * 12 10 8 15 15 H 1.48506 * 109.47254 * 329.99705 * 12 10 8 16 16 C 1.52994 * 109.47515 * 120.00615 * 2 1 3 17 17 C 1.53003 * 109.47174 * 65.16672 * 16 2 1 18 18 C 1.53002 * 109.46911 * 305.17186 * 16 2 1 19 19 C 1.50692 * 109.47429 * 185.17369 * 16 2 1 20 20 C 1.38240 * 120.00238 * 186.12396 * 19 16 2 21 21 C 1.38233 * 120.00159 * 180.02562 * 20 19 16 22 22 C 1.38237 * 120.00138 * 359.97438 * 21 20 19 23 23 C 1.38238 * 119.99788 * 0.26493 * 22 21 20 24 24 C 1.38237 * 120.00059 * 6.13670 * 19 16 2 25 25 H 1.08996 * 109.47298 * 185.48684 * 1 2 3 26 26 H 1.09001 * 109.46564 * 305.48484 * 1 2 3 27 27 H 1.08998 * 109.47274 * 65.48126 * 1 2 3 28 28 H 1.00897 * 110.99788 * 321.04520 * 4 2 1 29 29 H 1.09005 * 109.47022 * 299.99837 * 5 4 2 30 30 H 1.08998 * 109.46942 * 60.00017 * 5 4 2 31 31 H 1.08988 * 109.47264 * 300.00172 * 6 5 4 32 32 H 1.09008 * 109.46789 * 60.00434 * 6 5 4 33 33 H 1.08996 * 109.48037 * 300.00306 * 7 6 5 34 34 H 1.08998 * 109.46678 * 60.00694 * 7 6 5 35 35 H 0.97006 * 119.99590 * 179.97438 * 11 10 8 36 36 H 1.09000 * 109.47279 * 180.02562 * 17 16 2 37 37 H 1.09000 * 109.47229 * 300.00409 * 17 16 2 38 38 H 1.09007 * 109.46945 * 60.00556 * 17 16 2 39 39 H 1.09000 * 109.47017 * 300.00007 * 18 16 2 40 40 H 1.09000 * 109.47260 * 59.99733 * 18 16 2 41 41 H 1.09000 * 109.46935 * 179.97438 * 18 16 2 42 42 H 1.07997 * 119.99671 * 359.97438 * 20 19 16 43 43 H 1.08004 * 120.00105 * 179.97438 * 21 20 19 44 44 H 1.07995 * 119.99833 * 179.97438 * 22 21 20 45 45 H 1.08000 * 119.99849 * 179.71910 * 23 22 21 46 46 H 1.07997 * 119.99598 * 0.02562 * 24 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6924 -1.1996 5 6 2.0824 0.2228 -2.3470 6 6 2.5960 -0.5326 -3.5743 7 6 2.6608 0.4205 -4.7695 8 6 3.1662 -0.3237 -5.9785 9 1 3.4157 -1.3717 -5.9023 10 6 3.3099 0.3333 -7.1821 11 7 3.0064 1.6096 -7.2749 12 14 3.9356 -0.5893 -8.6810 13 1 2.7863 -1.1713 -9.4196 14 1 4.6705 0.3480 -9.5680 15 1 4.8477 -1.6780 -8.2471 16 6 2.0401 -0.7213 1.2491 17 6 1.6390 -2.1965 1.1857 18 6 1.4267 -0.0792 2.4950 19 6 3.5415 -0.6113 1.3148 20 6 4.2427 -1.2951 2.2905 21 6 5.6200 -1.1938 2.3511 22 6 6.2963 -0.4091 1.4357 23 6 5.5947 0.2786 0.4631 24 6 4.2178 0.1735 0.3996 25 1 -0.3634 -1.0229 0.0983 26 1 -0.3632 0.5966 0.8368 27 1 -0.3634 0.4265 -0.9350 28 1 1.4494 -1.4978 -1.4102 29 1 1.0869 0.6165 -2.5525 30 1 2.7588 1.0463 -2.1182 31 1 3.5914 -0.9260 -3.3685 32 1 1.9198 -1.3564 -3.8032 33 1 1.6652 0.8136 -4.9752 34 1 3.3367 1.2444 -4.5408 35 1 3.1079 2.0719 -8.1216 36 1 2.0020 -2.7103 2.0758 37 1 0.5529 -2.2760 1.1382 38 1 2.0760 -2.6540 0.2980 39 1 1.7124 0.9717 2.5402 40 1 0.3406 -0.1587 2.4475 41 1 1.7897 -0.5934 3.3849 42 1 3.7143 -1.9078 3.0058 43 1 6.1677 -1.7277 3.1136 44 1 7.3722 -0.3297 1.4833 45 1 6.1227 0.8952 -0.2492 46 1 3.6700 0.7082 -0.3622 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000118955432.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:09 Heat of formation + Delta-G solvation = -13.815879 kcal Electronic energy + Delta-G solvation = -21590.575963 eV Core-core repulsion = 18671.336187 eV Total energy + Delta-G solvation = -2919.239776 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.03117 -38.60173 -36.59924 -35.01777 -33.01858 -31.62945 -31.09908 -29.47641 -28.28840 -27.42065 -25.36764 -24.01621 -23.29042 -22.28704 -21.97208 -19.49280 -18.53023 -17.96892 -16.61084 -16.38974 -16.30275 -15.92938 -15.85946 -15.27409 -14.88497 -14.65991 -14.37517 -14.29905 -14.01472 -13.80148 -13.47934 -13.20959 -13.14451 -13.07418 -12.77512 -12.74179 -12.50728 -12.41308 -12.37340 -12.09928 -11.99847 -11.77221 -11.59124 -11.39534 -11.29338 -11.22703 -10.92005 -10.55906 -9.65909 -9.43544 -9.16648 -8.20770 -6.31721 0.62556 0.68461 1.38929 1.40469 1.51823 2.40353 3.05030 3.12328 3.25343 3.72091 3.84919 4.16068 4.25790 4.28760 4.30642 4.34565 4.40367 4.46153 4.50807 4.53012 4.67888 4.76602 4.80569 4.84767 4.88915 4.91538 5.02484 5.06977 5.10406 5.15334 5.19197 5.22582 5.25486 5.31107 5.36467 5.47018 5.52281 5.58702 5.73730 5.75386 5.80446 5.85775 5.94681 6.15646 6.28152 6.30303 6.57873 6.85129 7.37533 8.91164 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.019643 B = 0.003881 C = 0.003464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.088610 B = 7212.445618 C = 8081.613376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.090 3.910 3 H 0.064 0.936 4 N -0.677 5.677 5 C 0.075 3.925 6 C -0.089 4.089 7 C 0.027 3.973 8 C -0.543 4.543 9 H 0.058 0.942 10 C 0.000 4.000 11 N -0.934 5.934 12 Si 0.965 3.035 13 H -0.271 1.271 14 H -0.281 1.281 15 H -0.264 1.264 16 C -0.008 4.008 17 C -0.136 4.136 18 C -0.138 4.138 19 C -0.062 4.062 20 C -0.125 4.125 21 C -0.130 4.130 22 C -0.138 4.138 23 C -0.144 4.144 24 C -0.113 4.113 25 H 0.072 0.928 26 H 0.076 0.924 27 H 0.042 0.958 28 H 0.343 0.657 29 H 0.022 0.978 30 H 0.056 0.944 31 H 0.048 0.952 32 H 0.049 0.951 33 H -0.010 1.010 34 H -0.011 1.011 35 H 0.263 0.737 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.051 0.949 39 H 0.048 0.952 40 H 0.074 0.926 41 H 0.067 0.933 42 H 0.136 0.864 43 H 0.140 0.860 44 H 0.131 0.869 45 H 0.114 0.886 46 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.839 -5.807 23.248 24.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.020 4.020 3 H 0.082 0.918 4 N -0.308 5.308 5 C -0.054 4.054 6 C -0.127 4.127 7 C -0.011 4.011 8 C -0.581 4.581 9 H 0.076 0.924 10 C -0.198 4.198 11 N -0.574 5.574 12 Si 0.789 3.211 13 H -0.196 1.196 14 H -0.206 1.206 15 H -0.189 1.189 16 C -0.008 4.008 17 C -0.193 4.193 18 C -0.195 4.195 19 C -0.062 4.062 20 C -0.143 4.143 21 C -0.148 4.148 22 C -0.156 4.156 23 C -0.162 4.162 24 C -0.131 4.131 25 H 0.091 0.909 26 H 0.095 0.905 27 H 0.061 0.939 28 H 0.162 0.838 29 H 0.040 0.960 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.009 0.991 34 H 0.007 0.993 35 H 0.072 0.928 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.093 0.907 41 H 0.086 0.914 42 H 0.154 0.846 43 H 0.158 0.842 44 H 0.149 0.851 45 H 0.132 0.868 46 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -1.179 -5.586 23.295 23.984 hybrid contribution -0.449 0.270 -1.620 1.702 sum -1.628 -5.316 21.675 22.377 Atomic orbital electron populations 1.22554 0.96077 1.03210 1.02093 1.21603 0.93303 0.97134 0.89956 0.91762 1.60644 1.57433 1.09507 1.03214 1.21792 0.98268 0.95136 0.90165 1.21333 0.99977 0.97949 0.93467 1.18956 0.94680 0.94451 0.93015 1.21690 1.43771 0.96799 0.95798 0.92422 1.25977 0.95651 0.95758 1.02407 1.70101 1.49932 1.10661 1.26713 0.85456 0.78665 0.78433 0.78561 1.19623 1.20636 1.18874 1.19469 0.90167 0.96770 0.94420 1.21883 1.01550 0.93734 1.02178 1.21941 1.01324 1.00257 0.95987 1.19845 0.95533 0.96111 0.94672 1.21187 0.94328 0.99982 0.98826 1.21359 0.94685 0.99283 0.99480 1.21321 1.00462 0.97982 0.95824 1.21354 0.94921 1.00677 0.99223 1.21310 0.94279 0.99210 0.98312 0.90941 0.90484 0.93932 0.83828 0.95988 0.92599 0.93363 0.93252 0.99142 0.99253 0.92777 0.91748 0.91320 0.93003 0.93264 0.90737 0.91423 0.84601 0.84242 0.85113 0.86821 0.86718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.46 8.38 71.98 0.60 -2.86 16 2 C 0.09 2.04 1.21 44.91 0.05 2.09 16 3 H 0.06 1.64 6.53 -2.39 -0.02 1.63 16 4 N -0.68 -18.66 4.30 -491.56 -2.11 -20.77 16 5 C 0.08 2.61 5.19 86.30 0.45 3.06 16 6 C -0.09 -3.79 5.41 30.59 0.17 -3.63 16 7 C 0.03 1.45 4.97 29.85 0.15 1.59 16 8 C -0.54 -31.81 9.11 25.60 0.23 -31.58 16 9 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 10 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 11 N -0.93 -57.90 13.29 21.45 0.28 -57.61 16 12 Si 0.96 45.15 29.54 68.60 2.03 47.18 16 13 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 14 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 15 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 16 C -0.01 -0.15 0.46 -52.93 -0.02 -0.17 16 17 C -0.14 -2.38 7.60 71.98 0.55 -1.83 16 18 C -0.14 -2.13 7.85 71.98 0.57 -1.57 16 19 C -0.06 -1.45 4.64 -19.87 -0.09 -1.55 16 20 C -0.13 -2.60 8.77 22.27 0.20 -2.40 16 21 C -0.13 -2.67 10.05 22.27 0.22 -2.45 16 22 C -0.14 -3.20 10.05 22.27 0.22 -2.97 16 23 C -0.14 -3.92 10.05 22.27 0.22 -3.70 16 24 C -0.11 -3.19 8.51 22.27 0.19 -3.00 16 25 H 0.07 1.21 6.33 -2.39 -0.02 1.20 16 26 H 0.08 1.23 6.68 -2.39 -0.02 1.22 16 27 H 0.04 0.94 7.35 -2.39 -0.02 0.93 16 28 H 0.34 8.91 7.70 -89.70 -0.69 8.22 16 29 H 0.02 0.77 7.36 -2.38 -0.02 0.75 16 30 H 0.06 2.03 6.95 -2.39 -0.02 2.01 16 31 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 32 H 0.05 2.02 8.14 -2.38 -0.02 2.01 16 33 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 34 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 35 H 0.26 15.30 8.31 -92.70 -0.77 14.53 16 36 H 0.06 0.97 7.07 -2.39 -0.02 0.95 16 37 H 0.07 1.01 6.46 -2.39 -0.02 0.99 16 38 H 0.05 1.09 7.13 -2.38 -0.02 1.08 16 39 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.07 0.96 6.47 -2.39 -0.02 0.94 16 41 H 0.07 0.91 7.78 -2.39 -0.02 0.89 16 42 H 0.14 2.15 7.11 -2.91 -0.02 2.13 16 43 H 0.14 2.09 8.06 -2.91 -0.02 2.06 16 44 H 0.13 2.47 8.06 -2.91 -0.02 2.45 16 45 H 0.11 3.03 8.06 -2.91 -0.02 3.01 16 46 H 0.11 3.52 4.01 -2.91 -0.01 3.51 16 Total: -1.00 -65.71 351.98 4.62 -61.09 By element: Atomic # 1 Polarization: 20.37 SS G_CDS: 0.26 Total: 20.63 kcal Atomic # 6 Polarization: -54.68 SS G_CDS: 4.17 Total: -50.52 kcal Atomic # 7 Polarization: -76.56 SS G_CDS: -1.83 Total: -78.38 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -65.71 4.62 -61.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000118955432.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.278 kcal (2) G-P(sol) polarization free energy of solvation -65.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds