Wall clock time and date at job start Mon Mar 30 2020 01:42:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31341 * 1 3 3 Si 1.86800 * 119.99992 * 2 1 4 4 H 1.48501 * 109.47483 * 270.00480 * 3 2 1 5 5 H 1.48498 * 109.47011 * 30.00344 * 3 2 1 6 6 H 1.48502 * 109.47495 * 149.99966 * 3 2 1 7 7 C 1.39084 * 120.00346 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00700 * 179.97438 * 7 2 1 9 9 N 1.36775 * 119.99976 * 359.97438 * 7 2 1 10 10 C 1.34773 * 120.00060 * 179.72858 * 9 7 2 11 11 O 1.21681 * 119.99916 * 359.97438 * 10 9 7 12 12 C 1.47056 * 119.99678 * 179.97438 * 10 9 7 13 13 N 1.30673 * 125.54171 * 359.69198 * 12 10 9 14 14 C 1.30743 * 115.88187 * 179.81726 * 13 12 10 15 15 Br 1.89097 * 122.11747 * 180.24090 * 14 13 12 16 16 C 1.34319 * 115.76079 * 0.47727 * 14 13 12 17 17 S 1.71062 * 109.11221 * 359.74515 * 16 14 13 18 18 H 0.96999 * 120.00153 * 359.97438 * 1 2 3 19 19 H 0.97000 * 119.99215 * 0.02562 * 9 7 2 20 20 H 1.08000 * 125.44115 * 179.76409 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3134 0.0000 0.0000 3 14 2.2474 1.6177 0.0000 4 1 2.4949 2.0466 -1.4001 5 1 1.4449 2.6526 0.7001 6 1 3.5450 1.4403 0.7000 7 6 2.0089 -1.2045 -0.0005 8 1 3.0889 -1.2045 -0.0010 9 7 1.3251 -2.3890 -0.0005 10 6 1.9990 -3.5561 -0.0066 11 8 3.2158 -3.5560 -0.0125 12 6 1.2637 -4.8297 -0.0060 13 7 -0.0369 -4.9559 0.0057 14 6 -0.4914 -6.1817 0.0001 15 35 -2.3425 -6.5677 0.0084 16 6 0.4399 -7.1496 -0.0069 17 16 1.9930 -6.4325 -0.0134 18 1 -0.4850 0.8400 0.0004 19 1 0.3551 -2.3889 -0.0005 20 1 0.2401 -8.2110 -0.0086 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000119325531.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:07 Heat of formation + Delta-G solvation = -13.041658 kcal Electronic energy + Delta-G solvation = -11422.206536 eV Core-core repulsion = 8984.301285 eV Total energy + Delta-G solvation = -2437.905251 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 275.931 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.05498 -39.71506 -36.20295 -33.62333 -32.85304 -30.69178 -28.13466 -26.33102 -22.69732 -20.80320 -20.34854 -19.13079 -18.02933 -16.89239 -16.39758 -15.95522 -15.84872 -14.99731 -14.72212 -14.46068 -13.61655 -12.98903 -12.74149 -12.55972 -12.10659 -11.99181 -11.64443 -11.45572 -11.26317 -10.82071 -10.72773 -10.24362 -9.80382 -8.64455 -6.07926 -0.86406 -0.08948 0.12676 0.99382 1.05796 1.43011 1.46522 1.57948 2.20543 2.23486 2.87193 3.13930 3.51736 3.98435 4.18284 4.59769 5.26428 5.76112 6.18050 6.39173 6.88179 7.27102 7.81391 8.51331 Molecular weight = 275.93amu Principal moments of inertia in cm(-1) A = 0.028115 B = 0.005739 C = 0.004774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.682261 B = 4877.887883 C = 5863.722861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C -0.008 4.008 3 Si 1.010 2.990 4 H -0.265 1.265 5 H -0.268 1.268 6 H -0.264 1.264 7 C -0.334 4.334 8 H 0.099 0.901 9 N -0.517 5.517 10 C 0.482 3.518 11 O -0.623 6.623 12 C -0.007 4.007 13 N -0.454 5.454 14 C 0.034 3.966 15 Br 0.023 6.977 16 C -0.245 4.245 17 S 0.313 5.687 18 H 0.287 0.713 19 H 0.402 0.598 20 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.504 -14.349 -0.016 15.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.211 4.211 3 Si 0.831 3.169 4 H -0.190 1.190 5 H -0.192 1.192 6 H -0.188 1.188 7 C -0.465 4.465 8 H 0.117 0.883 9 N -0.150 5.150 10 C 0.268 3.732 11 O -0.512 6.512 12 C -0.282 4.282 13 N -0.173 5.173 14 C -0.183 4.183 15 Br 0.105 6.895 16 C -0.389 4.389 17 S 0.568 5.432 18 H 0.097 0.903 19 H 0.237 0.763 20 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -3.834 -14.227 -0.005 14.735 hybrid contribution -1.031 0.741 -0.005 1.270 sum -4.865 -13.486 -0.010 14.337 Atomic orbital electron populations 1.69696 1.07574 1.30597 1.45650 1.26465 0.96583 1.03390 0.94686 0.84693 0.77977 0.75118 0.79147 1.19013 1.19204 1.18794 1.20052 0.93675 0.83028 1.49741 0.88313 1.41851 1.10162 1.04569 1.58396 1.16631 0.86448 0.82288 0.87875 1.90638 1.13136 1.86697 1.60743 1.27628 0.91613 1.00273 1.08710 1.66674 1.11836 1.24085 1.14657 1.21854 0.95656 0.89108 1.11665 1.96698 1.02090 1.92711 1.97960 1.27123 0.96418 1.07167 1.08228 1.83641 1.04262 0.94658 1.60618 0.90279 0.76283 0.75274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.21 13.05 21.69 0.28 -47.93 14 2 C -0.01 -0.39 5.50 84.97 0.47 0.07 14 3 Si 1.01 40.88 29.55 68.60 2.03 42.90 14 4 H -0.27 -10.34 7.11 99.48 0.71 -9.64 14 5 H -0.27 -10.22 7.11 99.48 0.71 -9.52 14 6 H -0.26 -10.55 7.11 99.48 0.71 -9.84 14 7 C -0.33 -18.79 9.68 84.13 0.81 -17.98 14 8 H 0.10 5.71 7.15 -2.91 -0.02 5.69 14 9 N -0.52 -28.28 5.27 -310.33 -1.64 -29.92 14 10 C 0.48 24.78 7.75 86.56 0.67 25.45 14 11 O -0.62 -34.64 16.51 -4.29 -0.07 -34.71 14 12 C -0.01 -0.30 7.45 87.18 0.65 0.35 14 13 N -0.45 -18.22 10.25 -185.35 -1.90 -20.12 14 14 C 0.03 1.06 7.10 83.96 0.60 1.66 14 15 Br 0.02 0.62 33.97 -20.37 -0.69 -0.08 14 16 C -0.25 -5.98 10.89 66.92 0.73 -5.26 14 17 S 0.31 9.09 23.02 -56.49 -1.30 7.79 14 18 H 0.29 14.17 8.31 -92.71 -0.77 13.40 14 19 H 0.40 22.04 7.55 -92.71 -0.70 21.34 14 20 H 0.23 3.40 8.06 -2.91 -0.02 3.38 14 Total: -1.00 -64.20 232.38 1.25 -62.96 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: 0.61 Total: 14.82 kcal Atomic # 6 Polarization: 0.37 SS G_CDS: 3.93 Total: 4.30 kcal Atomic # 7 Polarization: -94.72 SS G_CDS: -3.25 Total: -97.97 kcal Atomic # 8 Polarization: -34.64 SS G_CDS: -0.07 Total: -34.71 kcal Atomic # 14 Polarization: 40.88 SS G_CDS: 2.03 Total: 42.90 kcal Atomic # 16 Polarization: 9.09 SS G_CDS: -1.30 Total: 7.79 kcal Atomic # 35 Polarization: 0.62 SS G_CDS: -0.69 Total: -0.08 kcal Total: -64.20 1.25 -62.96 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119325531.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.915 kcal (2) G-P(sol) polarization free energy of solvation -64.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds