Wall clock time and date at job start Mon Mar 30 2020 01:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46771 * 2 1 4 4 C 1.50700 * 109.46828 * 119.99824 * 2 1 3 5 5 C 1.38231 * 119.99960 * 120.00291 * 4 2 1 6 6 C 1.38236 * 120.00267 * 180.02562 * 5 4 2 7 7 C 1.38235 * 119.99630 * 0.02562 * 6 5 4 8 8 C 1.50705 * 120.00097 * 179.97438 * 7 6 5 9 9 C 1.53005 * 109.47056 * 89.99498 * 8 7 6 10 10 N 1.46902 * 109.46667 * 180.02562 * 9 8 7 11 11 C 1.46904 * 110.99882 * 293.95207 * 10 9 8 12 12 C 1.46904 * 110.99713 * 170.00113 * 10 9 8 13 13 H 1.09005 * 109.47078 * 59.99805 * 12 10 9 14 14 C 1.53000 * 109.47015 * 299.99977 * 12 10 9 15 15 C 1.50696 * 109.46794 * 179.97438 * 12 10 9 16 16 H 1.07999 * 120.00319 * 0.02562 * 15 12 10 17 17 C 1.37885 * 119.99717 * 179.97438 * 15 12 10 18 18 N 1.31516 * 119.99913 * 180.02562 * 17 15 12 19 19 Si 1.86798 * 119.99766 * 0.02562 * 17 15 12 20 20 H 1.48500 * 109.47353 * 269.99586 * 19 17 15 21 21 H 1.48501 * 109.47293 * 30.00037 * 19 17 15 22 22 H 1.48504 * 109.46680 * 149.99835 * 19 17 15 23 23 C 1.38237 * 120.00252 * 0.24931 * 7 6 5 24 24 C 1.38233 * 119.99609 * 359.49421 * 23 7 6 25 25 H 1.08998 * 109.47456 * 299.99793 * 1 2 3 26 26 H 1.09005 * 109.47132 * 60.00377 * 1 2 3 27 27 H 1.09007 * 109.47279 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.46893 * 239.99722 * 2 1 3 29 29 H 1.09000 * 109.47327 * 299.99412 * 3 2 1 30 30 H 1.08994 * 109.47404 * 59.99681 * 3 2 1 31 31 H 1.09004 * 109.46713 * 179.97438 * 3 2 1 32 32 H 1.08002 * 120.00035 * 359.97438 * 5 4 2 33 33 H 1.07999 * 120.00212 * 179.97438 * 6 5 4 34 34 H 1.09003 * 109.46501 * 329.99720 * 8 7 6 35 35 H 1.08993 * 109.46926 * 209.99892 * 8 7 6 36 36 H 1.08993 * 109.46842 * 60.00381 * 9 8 7 37 37 H 1.09003 * 109.46885 * 300.00292 * 9 8 7 38 38 H 1.09001 * 109.47028 * 296.04863 * 11 10 9 39 39 H 1.09004 * 109.46903 * 56.05040 * 11 10 9 40 40 H 1.09000 * 109.47139 * 176.04661 * 11 10 9 41 41 H 1.08996 * 109.47024 * 59.99984 * 14 12 10 42 42 H 1.08998 * 109.46637 * 179.97438 * 14 12 10 43 43 H 1.08997 * 109.46749 * 299.99841 * 14 12 10 44 44 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 45 45 H 1.08000 * 120.00363 * 179.73154 * 23 7 6 46 46 H 1.08004 * 119.99916 * 180.22419 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.8270 -1.8343 1.1037 6 6 3.2873 -2.4863 2.2324 7 6 2.9524 -2.0146 3.4879 8 6 3.4537 -2.7256 4.7185 9 6 4.8013 -2.1336 5.1362 10 7 5.2902 -2.8271 6.3354 11 6 4.4195 -2.5621 7.4885 12 6 6.6806 -2.4546 6.6289 13 1 6.7406 -1.3794 6.7980 14 6 7.5714 -2.8351 5.4446 15 6 7.1460 -3.1835 7.8629 16 1 6.4762 -3.8566 8.3775 17 6 8.4275 -2.9920 8.3345 18 7 8.8339 -3.6285 9.4112 19 14 9.5861 -1.8283 7.4441 20 1 10.3448 -2.5791 6.4116 21 1 8.8005 -0.7489 6.7940 22 1 10.5344 -1.2320 8.4191 23 6 2.1530 -0.8940 3.6147 24 6 1.6971 -0.2390 2.4860 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8901 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9563 0.8899 31 1 3.1300 1.4425 0.0005 32 1 3.0877 -2.2035 0.1228 33 1 3.9079 -3.3646 2.1334 34 1 3.5749 -3.7868 4.5008 35 1 2.7351 -2.6005 5.5284 36 1 4.6801 -1.0725 5.3538 37 1 5.5199 -2.2586 4.3261 38 1 4.4528 -1.5003 7.7324 39 1 3.3961 -2.8469 7.2440 40 1 4.7635 -3.1426 8.3445 41 1 7.2345 -2.3075 4.5523 42 1 8.6029 -2.5582 5.6623 43 1 7.5113 -3.9102 5.2755 44 1 9.7355 -3.4940 9.7428 45 1 1.8877 -0.5280 4.5956 46 1 1.0754 0.6387 2.5851 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121368416.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:14 Heat of formation + Delta-G solvation = 15.628363 kcal Electronic energy + Delta-G solvation = -21084.974861 eV Core-core repulsion = 18167.011883 eV Total energy + Delta-G solvation = -2917.962977 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.75433 -37.50234 -35.80358 -33.12239 -31.73669 -30.91284 -30.02567 -27.95729 -27.40199 -25.54737 -24.37088 -23.11996 -22.58868 -21.11114 -19.92383 -19.33001 -16.78678 -16.48815 -15.79259 -15.20722 -15.06436 -14.41408 -14.35718 -13.95948 -13.81112 -13.57562 -13.38181 -13.31672 -13.01319 -12.62439 -12.53657 -12.31699 -12.17769 -11.85203 -11.64828 -11.51225 -11.33538 -11.13755 -10.92677 -10.78009 -10.75952 -10.63709 -10.42832 -10.14963 -10.05840 -9.47512 -9.00569 -8.89729 -8.55551 -8.43725 -7.33383 -6.06281 -4.04645 1.35304 1.42400 3.27090 3.37087 3.39093 3.74698 4.40409 4.46966 4.58303 4.72657 4.94544 4.94960 5.01636 5.20051 5.20987 5.27371 5.34914 5.35743 5.46997 5.53042 5.55841 5.66995 5.70605 5.72667 5.91762 5.95952 5.97607 6.00327 6.06549 6.14642 6.23643 6.29495 6.42377 6.44121 6.45544 6.53235 6.59873 6.61545 6.77478 6.83024 6.92918 7.04078 7.30126 7.60855 7.96488 8.11434 8.66925 9.00260 9.55961 11.06494 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.031725 B = 0.003313 C = 0.003173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.384809 B = 8448.456756 C = 8822.271491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.056 4.056 3 C -0.144 4.144 4 C -0.089 4.089 5 C -0.117 4.117 6 C -0.113 4.113 7 C -0.074 4.074 8 C -0.079 4.079 9 C 0.055 3.945 10 N -0.528 5.528 11 C 0.035 3.965 12 C 0.182 3.818 13 H -0.004 1.004 14 C -0.146 4.146 15 C -0.505 4.505 16 H 0.083 0.917 17 C 0.070 3.930 18 N -0.900 5.900 19 Si 0.886 3.114 20 H -0.278 1.278 21 H -0.270 1.270 22 H -0.297 1.297 23 C -0.116 4.116 24 C -0.114 4.114 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.075 0.925 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.117 0.883 33 H 0.123 0.877 34 H 0.079 0.921 35 H 0.070 0.930 36 H 0.022 0.978 37 H 0.073 0.927 38 H 0.011 0.989 39 H 0.047 0.953 40 H 0.081 0.919 41 H 0.029 0.971 42 H 0.041 0.959 43 H 0.061 0.939 44 H 0.264 0.736 45 H 0.119 0.881 46 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.433 7.355 -18.005 24.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.074 4.074 3 C -0.202 4.202 4 C -0.089 4.089 5 C -0.135 4.135 6 C -0.131 4.131 7 C -0.074 4.074 8 C -0.117 4.117 9 C -0.073 4.073 10 N -0.252 5.252 11 C -0.113 4.113 12 C 0.074 3.926 13 H 0.014 0.986 14 C -0.204 4.204 15 C -0.543 4.543 16 H 0.101 0.899 17 C -0.132 4.132 18 N -0.538 5.538 19 Si 0.717 3.283 20 H -0.205 1.205 21 H -0.195 1.195 22 H -0.225 1.225 23 C -0.134 4.134 24 C -0.132 4.132 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.093 0.907 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.135 0.865 33 H 0.140 0.860 34 H 0.097 0.903 35 H 0.089 0.911 36 H 0.040 0.960 37 H 0.092 0.908 38 H 0.030 0.970 39 H 0.066 0.934 40 H 0.100 0.900 41 H 0.048 0.952 42 H 0.059 0.941 43 H 0.080 0.920 44 H 0.074 0.926 45 H 0.137 0.863 46 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -15.282 6.822 -17.956 24.546 hybrid contribution 0.867 1.474 -0.238 1.726 sum -14.414 8.296 -18.194 24.650 Atomic orbital electron populations 1.21856 0.94507 1.01949 1.01756 1.20098 0.95807 0.95989 0.95501 1.21858 1.01345 0.95195 1.01753 1.19783 0.98525 0.96092 0.94493 1.21013 0.98376 0.95712 0.98424 1.21089 0.99922 1.00226 0.91910 1.20015 0.96634 0.95612 0.95155 1.20670 0.97148 0.99905 0.93932 1.22114 0.95112 0.95006 0.95066 1.61951 1.03494 1.57049 1.02756 1.22283 0.95376 0.98633 0.95029 1.19678 0.84108 0.94212 0.94563 0.98624 1.22215 0.98825 1.01791 0.97530 1.21004 0.98764 1.26379 1.08183 0.89869 1.24927 0.97863 0.95528 0.94882 1.69882 1.18479 1.42540 1.22942 0.86885 0.80982 0.81754 0.78721 1.20509 1.19491 1.22502 1.21058 0.98241 0.95616 0.98474 1.20896 1.00514 0.99836 0.91975 0.92486 0.92573 0.92568 0.90689 0.92565 0.92473 0.92497 0.86455 0.85950 0.90257 0.91109 0.96023 0.90836 0.97008 0.93384 0.90019 0.95188 0.94090 0.92015 0.92639 0.86282 0.86534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 9.01 37.16 0.33 -0.71 16 2 C -0.06 -0.46 3.09 -91.77 -0.28 -0.74 16 3 C -0.14 -1.11 9.01 37.16 0.33 -0.78 16 4 C -0.09 -0.94 4.78 -104.62 -0.50 -1.44 16 5 C -0.12 -1.29 9.67 -39.58 -0.38 -1.68 16 6 C -0.11 -1.39 9.70 -39.58 -0.38 -1.78 16 7 C -0.07 -0.97 5.13 -104.62 -0.54 -1.50 16 8 C -0.08 -1.13 5.28 -27.88 -0.15 -1.28 16 9 C 0.06 0.97 4.76 -3.82 -0.02 0.95 16 10 N -0.53 -11.06 4.62 -236.27 -1.09 -12.15 16 11 C 0.04 0.68 9.05 60.07 0.54 1.23 16 12 C 0.18 4.39 1.65 -68.86 -0.11 4.28 16 13 H 0.00 -0.09 7.20 -51.93 -0.37 -0.47 16 14 C -0.15 -3.28 8.47 37.16 0.31 -2.96 16 15 C -0.51 -14.21 8.51 -34.44 -0.29 -14.51 16 16 H 0.08 2.53 6.64 -52.49 -0.35 2.18 16 17 C 0.07 2.01 5.45 -17.82 -0.10 1.92 16 18 N -0.90 -27.55 13.96 55.43 0.77 -26.77 16 19 Si 0.89 22.21 24.37 -169.99 -4.14 18.07 16 20 H -0.28 -6.78 6.87 56.52 0.39 -6.40 16 21 H -0.27 -6.56 6.53 56.52 0.37 -6.19 16 22 H -0.30 -7.44 7.11 56.52 0.40 -7.04 16 23 C -0.12 -1.41 9.70 -39.58 -0.38 -1.80 16 24 C -0.11 -1.25 8.71 -39.58 -0.34 -1.59 16 25 H 0.06 0.41 7.39 -51.93 -0.38 0.03 16 26 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.58 7.88 -51.93 -0.41 0.17 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.44 7.39 -51.93 -0.38 0.06 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.12 1.07 7.95 -52.49 -0.42 0.65 16 33 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 34 H 0.08 1.15 8.09 -51.93 -0.42 0.73 16 35 H 0.07 0.98 6.41 -51.93 -0.33 0.65 16 36 H 0.02 0.38 8.12 -51.93 -0.42 -0.04 16 37 H 0.07 1.29 5.83 -51.93 -0.30 0.99 16 38 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 39 H 0.05 0.79 6.30 -51.93 -0.33 0.46 16 40 H 0.08 1.77 6.23 -51.93 -0.32 1.44 16 41 H 0.03 0.58 6.20 -51.93 -0.32 0.26 16 42 H 0.04 0.95 3.27 -51.93 -0.17 0.78 16 43 H 0.06 1.38 8.14 -51.93 -0.42 0.95 16 44 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 45 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 46 H 0.12 1.07 7.10 -52.48 -0.37 0.70 16 LS Contribution 350.70 15.07 5.28 5.28 Total: -1.00 -30.20 350.70 -9.01 -39.21 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -7.87 Total: -1.25 kcal Atomic # 6 Polarization: -20.43 SS G_CDS: -1.96 Total: -22.39 kcal Atomic # 7 Polarization: -38.61 SS G_CDS: -0.32 Total: -38.92 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.14 Total: 18.07 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.20 -9.01 -39.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121368416.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.840 kcal (2) G-P(sol) polarization free energy of solvation -30.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds