Wall clock time and date at job start Mon Mar 30 2020 01:23:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.47493 * 2 1 4 4 H 1.09000 * 109.47195 * 54.89326 * 3 2 1 5 5 C 1.50700 * 109.47403 * 174.89729 * 3 2 1 6 6 H 1.08000 * 119.99788 * 119.99982 * 5 3 2 7 7 C 1.37873 * 119.99882 * 299.99914 * 5 3 2 8 8 N 1.31518 * 120.00212 * 180.02562 * 7 5 3 9 9 Si 1.86807 * 120.00190 * 359.97438 * 7 5 3 10 10 H 1.48499 * 109.46832 * 89.99928 * 9 7 5 11 11 H 1.48498 * 109.47246 * 210.00079 * 9 7 5 12 12 H 1.48497 * 109.47016 * 329.99968 * 9 7 5 13 13 N 1.46895 * 109.46936 * 294.89718 * 3 2 1 14 14 C 1.46899 * 110.99967 * 154.20573 * 13 3 2 15 15 C 1.53002 * 109.47110 * 185.20246 * 14 13 3 16 16 C 1.50705 * 109.47311 * 180.02562 * 15 14 13 17 17 C 1.38238 * 119.99784 * 90.00217 * 16 15 14 18 18 C 1.38233 * 120.00040 * 180.02562 * 17 16 15 19 19 C 1.38235 * 119.99797 * 359.97438 * 18 17 16 20 20 C 1.50700 * 120.00142 * 179.97438 * 19 18 17 21 21 C 1.52997 * 109.47240 * 240.00444 * 20 19 18 22 22 C 1.52998 * 109.47533 * 119.99975 * 20 19 18 23 23 C 1.38236 * 120.00205 * 0.25424 * 19 18 17 24 24 C 1.38235 * 120.00052 * 270.02616 * 16 15 14 25 25 H 1.09003 * 109.47257 * 60.40398 * 1 2 3 26 26 H 1.08997 * 109.47167 * 180.40392 * 1 2 3 27 27 H 1.09007 * 109.47354 * 300.40137 * 1 2 3 28 28 H 1.08995 * 109.47375 * 239.99490 * 2 1 3 29 29 H 1.09008 * 109.47089 * 119.99718 * 2 1 3 30 30 H 0.96994 * 120.00376 * 180.02562 * 8 7 5 31 31 H 1.00900 * 111.00484 * 278.16022 * 13 3 2 32 32 H 1.09000 * 109.47339 * 65.21109 * 14 13 3 33 33 H 1.08997 * 109.47539 * 305.20656 * 14 13 3 34 34 H 1.09003 * 109.46980 * 60.00535 * 15 14 13 35 35 H 1.08992 * 109.47555 * 300.00214 * 15 14 13 36 36 H 1.07999 * 119.99770 * 0.02562 * 17 16 15 37 37 H 1.07992 * 120.00176 * 179.97438 * 18 17 16 38 38 H 1.09000 * 109.47017 * 359.97438 * 20 19 18 39 39 H 1.09000 * 109.47677 * 59.99327 * 21 20 19 40 40 H 1.09001 * 109.47514 * 179.97438 * 21 20 19 41 41 H 1.09000 * 109.47139 * 299.99274 * 21 20 19 42 42 H 1.08991 * 109.47558 * 180.02562 * 22 20 19 43 43 H 1.09005 * 109.46703 * 300.00657 * 22 20 19 44 44 H 1.09001 * 109.46830 * 60.00098 * 22 20 19 45 45 H 1.08004 * 120.00138 * 179.72571 * 23 19 18 46 46 H 1.07993 * 120.00315 * 0.02562 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6040 1.9821 0.8407 5 6 3.5417 1.4443 0.1264 6 1 4.1483 1.8884 -0.6490 7 6 4.1412 0.8791 1.2318 8 7 5.4517 0.8811 1.3424 9 14 3.0919 0.1116 2.5734 10 1 2.8705 -1.3246 2.2677 11 1 3.7875 0.2383 3.8792 12 1 1.7836 0.8110 2.6395 13 7 1.6536 2.0985 -1.2562 14 6 1.5562 3.5538 -1.0819 15 6 1.0280 4.1876 -2.3704 16 6 0.9287 5.6807 -2.1918 17 6 2.0050 6.4879 -2.5097 18 6 1.9141 7.8574 -2.3454 19 6 0.7468 8.4198 -1.8637 20 6 0.6479 9.9128 -1.6841 21 6 0.3665 10.2321 -0.2145 22 6 -0.4894 10.4567 -2.5510 23 6 -0.3278 7.6122 -1.5415 24 6 -0.2385 6.2431 -1.7097 25 1 -0.3634 0.5076 -0.8936 26 1 -0.3633 -1.0276 0.0072 27 1 -0.3634 0.5201 0.8864 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 5.8734 0.4832 2.1200 31 1 2.2961 1.8654 -1.9985 32 1 2.5422 3.9594 -0.8554 33 1 0.8743 3.7767 -0.2613 34 1 0.0419 3.7821 -2.5970 35 1 1.7098 3.9648 -3.1910 36 1 2.9168 6.0485 -2.8863 37 1 2.7551 8.4880 -2.5933 38 1 1.5873 10.3778 -1.9830 39 1 1.1767 9.8447 0.4032 40 1 0.2954 11.3120 -0.0844 41 1 -0.5728 9.7672 0.0849 42 1 -0.5607 11.5365 -2.4214 43 1 -0.2889 10.2291 -3.5980 44 1 -1.4287 9.9917 -2.2516 45 1 -1.2383 8.0513 -1.1610 46 1 -1.0790 5.6125 -1.4607 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000124259703.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:20 Heat of formation + Delta-G solvation = -4.850285 kcal Electronic energy + Delta-G solvation = -20901.328884 eV Core-core repulsion = 17982.477886 eV Total energy + Delta-G solvation = -2918.850998 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.64253 -36.82082 -35.72113 -33.23776 -31.92668 -30.88113 -30.57597 -27.79507 -27.33154 -26.07998 -23.26028 -22.66717 -22.20613 -21.03244 -19.97786 -19.69232 -16.99896 -16.38335 -15.58770 -15.26216 -14.94360 -14.42786 -14.14156 -13.84783 -13.69400 -13.60094 -13.41280 -13.15113 -12.90619 -12.58020 -12.47960 -12.23771 -11.98584 -11.70160 -11.60295 -11.41527 -11.31883 -11.11529 -11.08179 -10.79808 -10.68775 -10.60461 -10.34209 -10.21710 -9.75939 -9.43286 -9.20572 -8.80498 -8.58480 -8.34532 -7.34635 -6.12514 -4.13331 1.44554 1.51873 3.26201 3.36700 3.39372 3.84020 4.37434 4.55133 4.66178 4.93257 5.02354 5.03306 5.10516 5.20507 5.28808 5.41687 5.43427 5.47552 5.56657 5.62527 5.66958 5.76231 5.79655 5.88990 6.02883 6.03158 6.04120 6.05866 6.07637 6.16696 6.26355 6.28748 6.42494 6.55677 6.65141 6.68750 6.71498 6.75341 6.86886 6.98964 7.10933 7.13964 7.28943 7.57324 8.04559 8.39402 8.49884 8.89877 9.51159 11.00501 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.022977 B = 0.003468 C = 0.003319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.306671 B = 8072.538035 C = 8433.591068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.116 4.116 3 C 0.184 3.816 4 H 0.031 0.969 5 C -0.546 4.546 6 H 0.072 0.928 7 C 0.072 3.928 8 N -0.899 5.899 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.298 1.298 12 H -0.265 1.265 13 N -0.683 5.683 14 C 0.073 3.927 15 C -0.079 4.079 16 C -0.073 4.073 17 C -0.113 4.113 18 C -0.117 4.117 19 C -0.089 4.089 20 C -0.055 4.055 21 C -0.144 4.144 22 C -0.143 4.143 23 C -0.115 4.115 24 C -0.115 4.115 25 H 0.062 0.938 26 H 0.032 0.968 27 H 0.038 0.962 28 H 0.057 0.943 29 H 0.044 0.956 30 H 0.264 0.736 31 H 0.333 0.667 32 H 0.033 0.967 33 H 0.060 0.940 34 H 0.074 0.926 35 H 0.067 0.933 36 H 0.121 0.879 37 H 0.117 0.883 38 H 0.074 0.926 39 H 0.057 0.943 40 H 0.055 0.945 41 H 0.056 0.944 42 H 0.055 0.945 43 H 0.055 0.945 44 H 0.056 0.944 45 H 0.116 0.884 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.848 15.330 -6.887 20.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.154 4.154 3 C 0.075 3.925 4 H 0.049 0.951 5 C -0.584 4.584 6 H 0.090 0.910 7 C -0.131 4.131 8 N -0.536 5.536 9 Si 0.720 3.280 10 H -0.204 1.204 11 H -0.226 1.226 12 H -0.190 1.190 13 N -0.312 5.312 14 C -0.057 4.057 15 C -0.117 4.117 16 C -0.073 4.073 17 C -0.131 4.131 18 C -0.135 4.135 19 C -0.089 4.089 20 C -0.074 4.074 21 C -0.202 4.202 22 C -0.200 4.200 23 C -0.133 4.133 24 C -0.133 4.133 25 H 0.081 0.919 26 H 0.051 0.949 27 H 0.057 0.943 28 H 0.076 0.924 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.150 0.850 32 H 0.051 0.949 33 H 0.078 0.922 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.139 0.861 37 H 0.135 0.865 38 H 0.093 0.907 39 H 0.076 0.924 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.074 0.926 43 H 0.074 0.926 44 H 0.075 0.925 45 H 0.134 0.866 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -12.377 15.174 -6.667 20.686 hybrid contribution 0.711 -0.301 0.938 1.215 sum -11.666 14.874 -5.729 19.752 Atomic orbital electron populations 1.21729 0.97590 0.99255 1.01445 1.21816 0.93830 0.99379 1.00355 1.19558 0.94246 0.90583 0.88151 0.95132 1.21749 0.90573 1.38999 1.07109 0.91008 1.25012 0.94781 0.95313 0.97944 1.69917 1.08920 1.45082 1.29714 0.86809 0.80621 0.79858 0.80681 1.20426 1.22613 1.18961 1.60748 1.54844 1.06494 1.09071 1.21724 0.99311 0.89328 0.95347 1.20633 1.02449 0.89588 0.99005 1.19979 0.93577 0.96021 0.97748 1.21086 0.98365 0.93367 1.00300 1.21002 0.97183 0.94981 1.00317 1.19773 0.94215 0.94977 0.99954 1.20095 0.99572 0.91645 0.96079 1.21861 1.02077 1.01016 0.95220 1.21849 0.98112 1.00376 0.99681 1.20888 0.98239 0.93444 1.00714 1.21046 0.97791 0.94729 0.99725 0.91890 0.94870 0.94285 0.92405 0.93788 0.92649 0.85013 0.94860 0.92166 0.90702 0.91420 0.86088 0.86491 0.90710 0.92420 0.92612 0.92471 0.92618 0.92613 0.92495 0.86567 0.86163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.65 9.80 37.15 0.36 -2.28 16 2 C -0.12 -2.54 5.11 -26.73 -0.14 -2.68 16 3 C 0.18 4.31 1.57 -68.87 -0.11 4.20 16 4 H 0.03 0.76 6.76 -51.93 -0.35 0.41 16 5 C -0.55 -15.14 9.05 -34.44 -0.31 -15.45 16 6 H 0.07 2.16 7.97 -52.49 -0.42 1.74 16 7 C 0.07 2.08 5.45 -17.82 -0.10 1.98 16 8 N -0.90 -27.51 13.96 55.43 0.77 -26.73 16 9 Si 0.89 22.21 24.41 -169.99 -4.15 18.06 16 10 H -0.28 -6.74 6.83 56.52 0.39 -6.36 16 11 H -0.30 -7.47 7.11 56.52 0.40 -7.06 16 12 H -0.26 -6.37 6.53 56.52 0.37 -6.00 16 13 N -0.68 -13.62 5.68 -107.95 -0.61 -14.23 16 14 C 0.07 1.32 5.49 -3.82 -0.02 1.30 16 15 C -0.08 -1.15 5.65 -27.88 -0.16 -1.31 16 16 C -0.07 -1.01 5.13 -104.62 -0.54 -1.55 16 17 C -0.11 -1.52 9.70 -39.58 -0.38 -1.91 16 18 C -0.12 -1.42 9.67 -39.58 -0.38 -1.81 16 19 C -0.09 -1.02 4.78 -104.62 -0.50 -1.52 16 20 C -0.06 -0.50 3.09 -91.77 -0.28 -0.79 16 21 C -0.14 -1.24 9.00 37.16 0.33 -0.90 16 22 C -0.14 -1.12 9.01 37.16 0.33 -0.79 16 23 C -0.11 -1.34 8.71 -39.58 -0.34 -1.69 16 24 C -0.11 -1.48 9.70 -39.58 -0.38 -1.86 16 25 H 0.06 1.11 7.77 -51.93 -0.40 0.71 16 26 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 29 H 0.04 1.03 3.22 -51.92 -0.17 0.86 16 30 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 31 H 0.33 6.65 8.46 -39.29 -0.33 6.32 16 32 H 0.03 0.68 8.11 -51.93 -0.42 0.26 16 33 H 0.06 1.12 7.92 -51.93 -0.41 0.71 16 34 H 0.07 1.04 8.09 -51.93 -0.42 0.62 16 35 H 0.07 0.95 8.08 -51.93 -0.42 0.53 16 36 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 37 H 0.12 1.21 7.95 -52.49 -0.42 0.79 16 38 H 0.07 0.64 7.88 -51.93 -0.41 0.23 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.06 0.48 7.37 -51.93 -0.38 0.10 16 42 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.06 0.44 7.41 -51.93 -0.38 0.06 16 45 H 0.12 1.14 7.10 -52.48 -0.37 0.77 16 46 H 0.12 1.41 8.06 -52.49 -0.42 0.98 16 LS Contribution 360.94 15.07 5.44 5.44 Total: -1.00 -29.68 360.94 -9.47 -39.15 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -8.30 Total: 5.36 kcal Atomic # 6 Polarization: -24.43 SS G_CDS: -2.62 Total: -27.04 kcal Atomic # 7 Polarization: -41.13 SS G_CDS: 0.16 Total: -40.97 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.15 Total: 18.06 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -29.68 -9.47 -39.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124259703.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.299 kcal (2) G-P(sol) polarization free energy of solvation -29.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds