Wall clock time and date at job start Mon Mar 30 2020 01:23:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.47493 * 2 1 4 4 H 1.09000 * 109.47195 * 54.89326 * 3 2 1 5 5 C 1.50700 * 109.47403 * 174.89729 * 3 2 1 6 6 H 1.08000 * 119.99788 * 119.99982 * 5 3 2 7 7 C 1.37873 * 119.99882 * 299.99914 * 5 3 2 8 8 N 1.31518 * 120.00212 * 180.02562 * 7 5 3 9 9 Si 1.86807 * 120.00190 * 359.97438 * 7 5 3 10 10 H 1.48499 * 109.46832 * 89.99928 * 9 7 5 11 11 H 1.48498 * 109.47246 * 210.00079 * 9 7 5 12 12 H 1.48497 * 109.47016 * 329.99968 * 9 7 5 13 13 N 1.46895 * 109.46936 * 294.89718 * 3 2 1 14 14 C 1.46899 * 110.99967 * 154.20573 * 13 3 2 15 15 C 1.53002 * 109.47110 * 185.20246 * 14 13 3 16 16 C 1.50705 * 109.47311 * 180.02562 * 15 14 13 17 17 C 1.38238 * 119.99784 * 90.00217 * 16 15 14 18 18 C 1.38233 * 120.00040 * 180.02562 * 17 16 15 19 19 C 1.38235 * 119.99797 * 359.97438 * 18 17 16 20 20 C 1.50700 * 120.00142 * 179.97438 * 19 18 17 21 21 C 1.52997 * 109.47240 * 240.00444 * 20 19 18 22 22 C 1.52998 * 109.47533 * 119.99975 * 20 19 18 23 23 C 1.38236 * 120.00205 * 0.25424 * 19 18 17 24 24 C 1.38235 * 120.00052 * 270.02616 * 16 15 14 25 25 H 1.09003 * 109.47257 * 60.40398 * 1 2 3 26 26 H 1.08997 * 109.47167 * 180.40392 * 1 2 3 27 27 H 1.09007 * 109.47354 * 300.40137 * 1 2 3 28 28 H 1.08995 * 109.47375 * 239.99490 * 2 1 3 29 29 H 1.09008 * 109.47089 * 119.99718 * 2 1 3 30 30 H 0.96994 * 120.00376 * 180.02562 * 8 7 5 31 31 H 1.00900 * 111.00484 * 278.16022 * 13 3 2 32 32 H 1.09000 * 109.47339 * 65.21109 * 14 13 3 33 33 H 1.08997 * 109.47539 * 305.20656 * 14 13 3 34 34 H 1.09003 * 109.46980 * 60.00535 * 15 14 13 35 35 H 1.08992 * 109.47555 * 300.00214 * 15 14 13 36 36 H 1.07999 * 119.99770 * 0.02562 * 17 16 15 37 37 H 1.07992 * 120.00176 * 179.97438 * 18 17 16 38 38 H 1.09000 * 109.47017 * 359.97438 * 20 19 18 39 39 H 1.09000 * 109.47677 * 59.99327 * 21 20 19 40 40 H 1.09001 * 109.47514 * 179.97438 * 21 20 19 41 41 H 1.09000 * 109.47139 * 299.99274 * 21 20 19 42 42 H 1.08991 * 109.47558 * 180.02562 * 22 20 19 43 43 H 1.09005 * 109.46703 * 300.00657 * 22 20 19 44 44 H 1.09001 * 109.46830 * 60.00098 * 22 20 19 45 45 H 1.08004 * 120.00138 * 179.72571 * 23 19 18 46 46 H 1.07993 * 120.00315 * 0.02562 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6040 1.9821 0.8407 5 6 3.5417 1.4443 0.1264 6 1 4.1483 1.8884 -0.6490 7 6 4.1412 0.8791 1.2318 8 7 5.4517 0.8811 1.3424 9 14 3.0919 0.1116 2.5734 10 1 2.8705 -1.3246 2.2677 11 1 3.7875 0.2383 3.8792 12 1 1.7836 0.8110 2.6395 13 7 1.6536 2.0985 -1.2562 14 6 1.5562 3.5538 -1.0819 15 6 1.0280 4.1876 -2.3704 16 6 0.9287 5.6807 -2.1918 17 6 2.0050 6.4879 -2.5097 18 6 1.9141 7.8574 -2.3454 19 6 0.7468 8.4198 -1.8637 20 6 0.6479 9.9128 -1.6841 21 6 0.3665 10.2321 -0.2145 22 6 -0.4894 10.4567 -2.5510 23 6 -0.3278 7.6122 -1.5415 24 6 -0.2385 6.2431 -1.7097 25 1 -0.3634 0.5076 -0.8936 26 1 -0.3633 -1.0276 0.0072 27 1 -0.3634 0.5201 0.8864 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 5.8734 0.4832 2.1200 31 1 2.2961 1.8654 -1.9985 32 1 2.5422 3.9594 -0.8554 33 1 0.8743 3.7767 -0.2613 34 1 0.0419 3.7821 -2.5970 35 1 1.7098 3.9648 -3.1910 36 1 2.9168 6.0485 -2.8863 37 1 2.7551 8.4880 -2.5933 38 1 1.5873 10.3778 -1.9830 39 1 1.1767 9.8447 0.4032 40 1 0.2954 11.3120 -0.0844 41 1 -0.5728 9.7672 0.0849 42 1 -0.5607 11.5365 -2.4214 43 1 -0.2889 10.2291 -3.5980 44 1 -1.4287 9.9917 -2.2516 45 1 -1.2383 8.0513 -1.1610 46 1 -1.0790 5.6125 -1.4607 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000124259703.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:20 Heat of formation + Delta-G solvation = -20.891476 kcal Electronic energy + Delta-G solvation = -20902.024482 eV Core-core repulsion = 17982.477886 eV Total energy + Delta-G solvation = -2919.546596 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.59295 -38.43086 -36.76440 -34.77458 -33.87852 -31.98249 -31.71250 -29.33119 -27.95891 -27.64418 -24.66946 -23.89051 -23.50741 -22.23512 -21.64093 -20.71623 -19.11334 -17.37495 -17.02888 -16.67869 -16.07717 -15.87556 -15.47435 -15.14313 -14.96044 -14.68020 -14.54324 -14.40563 -14.23356 -13.95212 -13.63440 -13.48559 -13.33275 -13.08983 -13.00015 -12.58932 -12.51090 -12.49653 -12.24229 -12.09921 -11.93082 -11.82069 -11.61066 -11.47598 -11.44515 -11.28943 -11.18838 -10.70990 -9.78045 -9.35778 -9.11155 -8.35825 -6.40971 0.45928 0.54307 1.27958 1.32935 1.43735 2.27714 2.84828 2.99822 3.51257 3.79029 3.87353 4.09554 4.16936 4.21206 4.30663 4.34828 4.42393 4.46980 4.51389 4.56267 4.62601 4.66347 4.72193 4.76990 4.82913 4.93413 4.98204 5.01159 5.02994 5.10409 5.14805 5.19580 5.24739 5.28042 5.32723 5.37369 5.40938 5.45078 5.49801 5.58983 5.64076 5.77883 5.81202 6.06045 6.17102 6.38378 6.60501 6.77690 7.28083 8.80606 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.022977 B = 0.003468 C = 0.003319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.306671 B = 8072.538035 C = 8433.591068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.117 4.117 3 C 0.189 3.811 4 H 0.021 0.979 5 C -0.547 4.547 6 H 0.032 0.968 7 C 0.014 3.986 8 N -0.947 5.947 9 Si 0.951 3.049 10 H -0.263 1.263 11 H -0.300 1.300 12 H -0.248 1.248 13 N -0.669 5.669 14 C 0.078 3.922 15 C -0.063 4.063 16 C -0.093 4.093 17 C -0.130 4.130 18 C -0.127 4.127 19 C -0.088 4.088 20 C -0.056 4.056 21 C -0.143 4.143 22 C -0.140 4.140 23 C -0.118 4.118 24 C -0.122 4.122 25 H 0.070 0.930 26 H 0.057 0.943 27 H 0.040 0.960 28 H 0.056 0.944 29 H 0.032 0.968 30 H 0.266 0.734 31 H 0.333 0.667 32 H 0.001 0.999 33 H 0.058 0.942 34 H 0.087 0.913 35 H 0.068 0.932 36 H 0.117 0.883 37 H 0.132 0.868 38 H 0.079 0.921 39 H 0.044 0.956 40 H 0.072 0.928 41 H 0.058 0.942 42 H 0.070 0.930 43 H 0.051 0.949 44 H 0.058 0.942 45 H 0.137 0.863 46 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.633 16.022 -6.716 22.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.155 4.155 3 C 0.079 3.921 4 H 0.039 0.961 5 C -0.586 4.586 6 H 0.050 0.950 7 C -0.184 4.184 8 N -0.587 5.587 9 Si 0.778 3.222 10 H -0.189 1.189 11 H -0.228 1.228 12 H -0.172 1.172 13 N -0.297 5.297 14 C -0.052 4.052 15 C -0.101 4.101 16 C -0.093 4.093 17 C -0.148 4.148 18 C -0.145 4.145 19 C -0.088 4.088 20 C -0.074 4.074 21 C -0.201 4.201 22 C -0.197 4.197 23 C -0.135 4.135 24 C -0.140 4.140 25 H 0.089 0.911 26 H 0.076 0.924 27 H 0.059 0.941 28 H 0.075 0.925 29 H 0.050 0.950 30 H 0.075 0.925 31 H 0.149 0.851 32 H 0.020 0.980 33 H 0.076 0.924 34 H 0.105 0.895 35 H 0.087 0.913 36 H 0.135 0.865 37 H 0.149 0.851 38 H 0.098 0.902 39 H 0.063 0.937 40 H 0.090 0.910 41 H 0.077 0.923 42 H 0.089 0.911 43 H 0.070 0.930 44 H 0.077 0.923 45 H 0.155 0.845 46 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -15.185 15.873 -6.520 22.914 hybrid contribution 1.642 -0.397 0.812 1.874 sum -13.543 15.476 -5.709 21.343 Atomic orbital electron populations 1.21644 0.94427 1.01099 1.01978 1.21752 0.96621 0.97411 0.99730 1.19434 0.91094 0.92234 0.89310 0.96069 1.22082 0.92926 1.37733 1.05873 0.94967 1.25880 0.95859 0.96071 1.00556 1.70063 1.10936 1.46863 1.30828 0.85812 0.79388 0.79732 0.77277 1.18896 1.22772 1.17232 1.60786 1.53960 1.07439 1.07494 1.21723 0.97718 0.88221 0.97502 1.20446 1.02758 0.90141 0.96769 1.19969 0.94476 0.95468 0.99435 1.21215 0.98345 0.94252 1.00974 1.21245 0.98222 0.94651 1.00383 1.20122 0.93664 0.96482 0.98562 1.20157 1.00512 0.89946 0.96776 1.21856 1.01623 1.02120 0.94466 1.21828 0.97501 1.01337 0.99057 1.21159 0.99115 0.93065 1.00197 1.21250 0.97686 0.95591 0.99432 0.91059 0.92402 0.94066 0.92538 0.94978 0.92543 0.85062 0.98031 0.92373 0.89454 0.91295 0.86482 0.85060 0.90221 0.93677 0.90953 0.92292 0.91086 0.93016 0.92272 0.84482 0.85013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.52 9.80 71.98 0.71 -3.82 16 2 C -0.12 -4.94 5.11 30.59 0.16 -4.78 16 3 C 0.19 8.82 1.57 44.17 0.07 8.89 16 4 H 0.02 1.04 6.76 -2.39 -0.02 1.03 16 5 C -0.55 -31.23 9.05 25.60 0.23 -31.00 16 6 H 0.03 2.04 7.97 -2.91 -0.02 2.01 16 7 C 0.01 0.85 5.45 84.65 0.46 1.31 16 8 N -0.95 -59.76 13.96 21.45 0.30 -59.46 16 9 Si 0.95 45.68 24.41 68.60 1.67 47.36 16 10 H -0.26 -11.97 6.83 99.48 0.68 -11.29 16 11 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 12 H -0.25 -11.17 6.53 99.48 0.65 -10.52 16 13 N -0.67 -26.56 5.68 -495.46 -2.82 -29.37 16 14 C 0.08 2.87 5.49 86.30 0.47 3.35 16 15 C -0.06 -1.83 5.65 29.85 0.17 -1.66 16 16 C -0.09 -2.56 5.13 -19.86 -0.10 -2.66 16 17 C -0.13 -3.54 9.70 22.27 0.22 -3.32 16 18 C -0.13 -3.03 9.67 22.27 0.22 -2.82 16 19 C -0.09 -1.89 4.78 -19.87 -0.09 -1.99 16 20 C -0.06 -0.89 3.09 -11.54 -0.04 -0.93 16 21 C -0.14 -2.16 9.00 71.98 0.65 -1.51 16 22 C -0.14 -1.85 9.01 71.98 0.65 -1.20 16 23 C -0.12 -2.54 8.71 22.27 0.19 -2.35 16 24 C -0.12 -2.97 9.70 22.27 0.22 -2.76 16 25 H 0.07 2.28 7.77 -2.39 -0.02 2.26 16 26 H 0.06 1.67 8.14 -2.39 -0.02 1.66 16 27 H 0.04 1.36 8.14 -2.38 -0.02 1.34 16 28 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 29 H 0.03 1.43 3.22 -2.38 -0.01 1.42 16 30 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 31 H 0.33 13.45 8.46 -89.69 -0.76 12.69 16 32 H 0.00 0.06 8.11 -2.39 -0.02 0.04 16 33 H 0.06 2.15 7.92 -2.39 -0.02 2.13 16 34 H 0.09 2.30 8.09 -2.39 -0.02 2.28 16 35 H 0.07 1.94 8.08 -2.39 -0.02 1.92 16 36 H 0.12 3.15 8.06 -2.91 -0.02 3.12 16 37 H 0.13 2.64 7.95 -2.91 -0.02 2.61 16 38 H 0.08 1.21 7.88 -2.39 -0.02 1.19 16 39 H 0.04 0.78 8.14 -2.39 -0.02 0.77 16 40 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.06 0.86 7.37 -2.39 -0.02 0.84 16 42 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 43 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 44 H 0.06 0.76 7.41 -2.39 -0.02 0.74 16 45 H 0.14 2.34 7.10 -2.91 -0.02 2.32 16 46 H 0.13 2.83 8.06 -2.91 -0.02 2.81 16 Total: -1.00 -64.89 360.94 3.41 -61.48 By element: Atomic # 1 Polarization: 27.16 SS G_CDS: 0.08 Total: 27.24 kcal Atomic # 6 Polarization: -51.42 SS G_CDS: 4.17 Total: -47.24 kcal Atomic # 7 Polarization: -86.32 SS G_CDS: -2.52 Total: -88.83 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 1.67 Total: 47.36 kcal Total: -64.89 3.41 -61.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124259703.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.586 kcal (2) G-P(sol) polarization free energy of solvation -64.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds