Wall clock time and date at job start Mon Mar 30 2020 01:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47328 * 2 1 4 4 H 1.09005 * 109.47014 * 55.08996 * 3 2 1 5 5 C 1.52993 * 109.47488 * 175.09193 * 3 2 1 6 6 C 1.50697 * 109.47256 * 185.00198 * 5 3 2 7 7 C 1.38236 * 119.99750 * 269.72437 * 6 5 3 8 8 C 1.38231 * 120.00180 * 180.32379 * 7 6 5 9 9 C 1.38235 * 120.00102 * 359.95146 * 8 7 6 10 10 C 1.38245 * 119.99749 * 0.02760 * 9 8 7 11 11 C 1.38225 * 120.00378 * 89.99927 * 6 5 3 12 12 N 1.46899 * 109.46898 * 295.09450 * 3 2 1 13 13 C 1.46899 * 111.00035 * 319.37549 * 12 3 2 14 14 C 1.46898 * 111.00227 * 83.33046 * 12 3 2 15 15 C 1.52995 * 109.47368 * 162.36453 * 14 12 3 16 16 C 1.52999 * 109.47414 * 179.97438 * 15 14 12 17 17 C 1.50700 * 109.47270 * 179.97438 * 16 15 14 18 18 H 1.07997 * 120.00160 * 0.02562 * 17 16 15 19 19 C 1.37885 * 119.99969 * 180.02562 * 17 16 15 20 20 N 1.31518 * 119.99814 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99840 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46977 * 60.00712 * 21 19 17 23 23 H 1.48505 * 109.47177 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47185 * 300.00197 * 21 19 17 25 25 H 1.08998 * 109.47139 * 319.41867 * 1 2 3 26 26 H 1.08999 * 109.47242 * 79.41921 * 1 2 3 27 27 H 1.08996 * 109.47083 * 199.41748 * 1 2 3 28 28 H 1.09005 * 109.47277 * 239.99838 * 2 1 3 29 29 H 1.09002 * 109.47299 * 120.00152 * 2 1 3 30 30 H 1.09005 * 109.47021 * 64.99923 * 5 3 2 31 31 H 1.09001 * 109.47401 * 305.00649 * 5 3 2 32 32 H 1.08004 * 119.99979 * 0.27381 * 7 6 5 33 33 H 1.08007 * 120.00258 * 179.97438 * 8 7 6 34 34 H 1.07997 * 120.00450 * 180.02562 * 9 8 7 35 35 H 1.08001 * 119.99957 * 179.97438 * 10 9 8 36 36 H 1.08010 * 120.00072 * 359.72573 * 11 6 5 37 37 H 1.08998 * 109.47545 * 60.00102 * 13 12 3 38 38 H 1.09000 * 109.47001 * 180.02562 * 13 12 3 39 39 H 1.09000 * 109.46997 * 300.00099 * 13 12 3 40 40 H 1.09008 * 109.47322 * 282.36632 * 14 12 3 41 41 H 1.09003 * 109.47218 * 42.36191 * 14 12 3 42 42 H 1.08993 * 109.47364 * 300.00037 * 15 14 12 43 43 H 1.09001 * 109.47548 * 60.00070 * 15 14 12 44 44 H 1.08994 * 109.47686 * 300.00371 * 16 15 14 45 45 H 1.08999 * 109.46785 * 60.00410 * 16 15 14 46 46 H 0.96998 * 119.99454 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6066 1.9811 0.8428 5 6 3.5650 1.4443 0.1234 6 6 4.0573 2.8632 0.2470 7 6 4.3848 3.5824 -0.8872 8 6 4.8428 4.8817 -0.7736 9 6 4.9723 5.4622 0.4742 10 6 4.6443 4.7432 1.6085 11 6 4.1868 3.4437 1.4947 12 7 1.6495 2.0999 -1.2543 13 6 1.8060 1.1898 -2.3966 14 6 0.2752 2.6127 -1.1742 15 6 0.0512 3.6462 -2.2798 16 6 -1.3803 4.1798 -2.1968 17 6 -1.6007 5.1982 -3.2855 18 1 -0.8001 5.4404 -3.9686 19 6 -2.8247 5.8209 -3.4095 20 7 -3.7996 5.5264 -2.5773 21 14 -3.0977 7.0838 -4.7586 22 1 -2.8832 6.4475 -6.0831 23 1 -4.4868 7.6026 -4.6773 24 1 -2.1400 8.2058 -4.5874 25 1 -0.3633 0.7805 0.6685 26 1 -0.3634 0.1887 -1.0102 27 1 -0.3633 -0.9692 0.3416 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 4.0018 0.9840 -0.7629 31 1 3.8586 0.8795 1.0082 32 1 4.2837 3.1288 -1.8622 33 1 5.0991 5.4434 -1.6597 34 1 5.3297 6.4775 0.5631 35 1 4.7459 5.1966 2.5835 36 1 3.9309 2.8819 2.3810 37 1 1.1760 0.3123 -2.2511 38 1 1.5104 1.7019 -3.3123 39 1 2.8482 0.8800 -2.4742 40 1 -0.4278 1.7890 -1.2989 41 1 0.1180 3.0805 -0.2023 42 1 0.7541 4.4698 -2.1552 43 1 0.2083 3.1784 -3.2518 44 1 -2.0830 3.3560 -2.3217 45 1 -1.5379 4.6476 -1.2250 46 1 -4.6607 5.9642 -2.6649 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000128674618.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:51 Heat of formation + Delta-G solvation = 9.531927 kcal Electronic energy + Delta-G solvation = -21651.073798 eV Core-core repulsion = 18732.846459 eV Total energy + Delta-G solvation = -2918.227339 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.60340 -38.31459 -34.32497 -32.82308 -32.07994 -30.80886 -30.62962 -28.37118 -27.14720 -25.26448 -23.92558 -22.39694 -21.96771 -21.04290 -19.78394 -19.50217 -16.62865 -16.41735 -16.05419 -15.32813 -15.09727 -14.72004 -14.43951 -14.30514 -14.00104 -13.33128 -13.22310 -12.98143 -12.56587 -12.43426 -12.25717 -12.11027 -11.87722 -11.75550 -11.48357 -11.32665 -11.15647 -10.97884 -10.82876 -10.73381 -10.63441 -10.50727 -10.46912 -10.40757 -9.49709 -9.24920 -9.01129 -8.71385 -8.46517 -8.28661 -7.80324 -5.94460 -3.96008 1.55602 1.62314 3.36817 3.40686 3.43649 3.97053 4.21182 4.51486 4.73353 4.99053 5.03281 5.08486 5.14769 5.20183 5.28622 5.41185 5.42410 5.48559 5.62424 5.63035 5.68200 5.69209 5.77017 5.85792 5.90268 5.92425 5.96104 6.11076 6.13277 6.20170 6.26450 6.28395 6.35104 6.50405 6.63700 6.71227 6.80617 6.84210 6.90870 7.20949 7.23482 7.48876 7.53214 7.75280 7.91728 8.06860 8.50837 9.11107 9.67509 11.17014 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.014574 B = 0.004595 C = 0.003813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.706713 B = 6092.453629 C = 7341.312936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.155 4.155 3 C 0.087 3.913 4 H 0.078 0.922 5 C -0.070 4.070 6 C -0.063 4.063 7 C -0.087 4.087 8 C -0.121 4.121 9 C -0.129 4.129 10 C -0.125 4.125 11 C -0.125 4.125 12 N -0.526 5.526 13 C 0.017 3.983 14 C 0.049 3.951 15 C -0.102 4.102 16 C 0.023 3.977 17 C -0.516 4.516 18 H 0.054 0.946 19 C 0.056 3.944 20 N -0.897 5.897 21 Si 0.891 3.109 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.277 1.277 25 H 0.058 0.942 26 H 0.063 0.937 27 H 0.049 0.951 28 H 0.069 0.931 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.120 0.880 33 H 0.117 0.883 34 H 0.115 0.885 35 H 0.115 0.885 36 H 0.114 0.886 37 H 0.031 0.969 38 H 0.070 0.930 39 H 0.058 0.942 40 H 0.041 0.959 41 H 0.062 0.938 42 H 0.052 0.948 43 H 0.044 0.956 44 H 0.012 0.988 45 H 0.013 0.987 46 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.702 -9.550 7.367 20.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.194 4.194 3 C -0.022 4.022 4 H 0.096 0.904 5 C -0.107 4.107 6 C -0.063 4.063 7 C -0.105 4.105 8 C -0.139 4.139 9 C -0.147 4.147 10 C -0.143 4.143 11 C -0.143 4.143 12 N -0.249 5.249 13 C -0.131 4.131 14 C -0.078 4.078 15 C -0.140 4.140 16 C -0.015 4.015 17 C -0.555 4.555 18 H 0.072 0.928 19 C -0.145 4.145 20 N -0.537 5.537 21 Si 0.719 3.281 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.203 1.203 25 H 0.077 0.923 26 H 0.082 0.918 27 H 0.068 0.932 28 H 0.088 0.912 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.138 0.862 33 H 0.135 0.865 34 H 0.133 0.867 35 H 0.133 0.867 36 H 0.132 0.868 37 H 0.049 0.951 38 H 0.088 0.912 39 H 0.077 0.923 40 H 0.059 0.941 41 H 0.081 0.919 42 H 0.071 0.929 43 H 0.063 0.937 44 H 0.030 0.970 45 H 0.032 0.968 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 16.827 -9.101 7.338 20.489 hybrid contribution -0.922 0.151 -0.580 1.099 sum 15.905 -8.950 6.758 19.461 Atomic orbital electron populations 1.22063 0.95499 1.01467 1.02599 1.22242 0.96601 0.98303 1.02259 1.21824 0.94151 0.92574 0.93672 0.90361 1.20639 0.95152 0.93024 1.01930 1.19664 0.97665 0.96066 0.92945 1.20963 0.97102 0.94150 0.98251 1.21142 0.99950 0.95537 0.97286 1.21066 1.01177 0.99546 0.92880 1.21024 1.00287 0.94741 0.98256 1.20970 1.00874 0.95529 0.96905 1.62206 1.25420 1.35443 1.01870 1.22507 1.00426 0.95368 0.94827 1.22563 0.86749 0.97837 1.00610 1.21601 1.00058 0.96592 0.95707 1.19055 0.89879 0.95575 0.96971 1.21225 0.97283 1.22426 1.14544 0.92821 1.25021 0.96226 0.97053 0.96174 1.69961 1.03324 1.43194 1.37221 0.86681 0.77078 0.81893 0.82483 1.20297 1.21338 1.20255 0.92297 0.91780 0.93164 0.91221 0.92022 0.91134 0.91275 0.86153 0.86506 0.86721 0.86723 0.86785 0.95104 0.91168 0.92343 0.94099 0.91904 0.92908 0.93734 0.96990 0.96814 0.93062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.89 8.22 37.16 0.31 -1.58 16 2 C -0.16 -1.65 4.87 -26.73 -0.13 -1.78 16 3 C 0.09 1.05 1.88 -67.71 -0.13 0.92 16 4 H 0.08 1.04 7.45 -51.93 -0.39 0.66 16 5 C -0.07 -0.75 4.91 -27.89 -0.14 -0.88 16 6 C -0.06 -0.79 4.95 -104.63 -0.52 -1.30 16 7 C -0.09 -1.13 9.32 -39.58 -0.37 -1.50 16 8 C -0.12 -1.55 10.05 -39.59 -0.40 -1.95 16 9 C -0.13 -1.57 10.05 -39.58 -0.40 -1.97 16 10 C -0.13 -1.48 10.05 -39.58 -0.40 -1.88 16 11 C -0.12 -1.49 9.70 -39.59 -0.38 -1.88 16 12 N -0.53 -7.54 3.96 -234.89 -0.93 -8.47 16 13 C 0.02 0.22 8.20 60.06 0.49 0.71 16 14 C 0.05 0.86 3.89 -3.83 -0.01 0.85 16 15 C -0.10 -2.17 5.23 -26.73 -0.14 -2.31 16 16 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 17 C -0.52 -15.01 9.11 -34.44 -0.31 -15.32 16 18 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 19 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 20 N -0.90 -27.48 13.29 55.43 0.74 -26.74 16 21 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 25 H 0.06 0.75 7.56 -51.93 -0.39 0.35 16 26 H 0.06 0.85 4.98 -51.93 -0.26 0.59 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.07 0.72 6.05 -51.93 -0.31 0.41 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.73 6.93 -51.93 -0.36 0.37 16 31 H 0.07 0.63 8.09 -51.93 -0.42 0.21 16 32 H 0.12 1.53 8.06 -52.48 -0.42 1.11 16 33 H 0.12 1.32 8.06 -52.48 -0.42 0.90 16 34 H 0.11 1.17 8.06 -52.49 -0.42 0.75 16 35 H 0.11 1.12 8.06 -52.49 -0.42 0.69 16 36 H 0.11 1.16 8.06 -52.48 -0.42 0.73 16 37 H 0.03 0.38 4.94 -51.93 -0.26 0.13 16 38 H 0.07 1.00 6.65 -51.93 -0.35 0.65 16 39 H 0.06 0.65 7.00 -51.93 -0.36 0.29 16 40 H 0.04 0.71 4.93 -51.92 -0.26 0.45 16 41 H 0.06 1.14 7.61 -51.93 -0.40 0.75 16 42 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.04 0.94 6.77 -51.93 -0.35 0.58 16 44 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 354.97 15.07 5.35 5.35 Total: -1.00 -30.69 354.97 -10.50 -41.19 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -7.87 Total: -0.54 kcal Atomic # 6 Polarization: -25.10 SS G_CDS: -2.77 Total: -27.86 kcal Atomic # 7 Polarization: -35.02 SS G_CDS: -0.19 Total: -35.22 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.69 -10.50 -41.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128674618.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.721 kcal (2) G-P(sol) polarization free energy of solvation -30.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds