Wall clock time and date at job start Mon Mar 30 2020 01:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47171 * 2 1 4 4 H 1.09008 * 109.47203 * 55.02471 * 3 2 1 5 5 C 1.50703 * 109.47449 * 175.02389 * 3 2 1 6 6 H 1.07998 * 120.00216 * 119.99635 * 5 3 2 7 7 C 1.37879 * 119.99694 * 300.00147 * 5 3 2 8 8 N 1.31513 * 120.00489 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00034 * 179.97438 * 7 5 3 10 10 H 1.48507 * 109.47193 * 59.99522 * 9 7 5 11 11 H 1.48496 * 109.47407 * 179.97438 * 9 7 5 12 12 H 1.48506 * 109.46748 * 300.00129 * 9 7 5 13 13 N 1.46905 * 109.47110 * 295.02335 * 3 2 1 14 14 C 1.46896 * 110.99759 * 155.98618 * 13 3 2 15 15 H 1.09005 * 109.47737 * 34.73602 * 14 13 3 16 16 C 1.52996 * 109.47574 * 274.72961 * 14 13 3 17 17 C 1.53008 * 109.46975 * 154.73280 * 14 13 3 18 18 C 1.52997 * 109.46778 * 294.99987 * 17 14 13 19 19 C 1.50707 * 109.46975 * 179.97438 * 18 17 14 20 20 C 1.38234 * 120.00149 * 269.73173 * 19 18 17 21 21 C 1.38231 * 119.99813 * 179.78966 * 20 19 18 22 22 C 1.38231 * 120.00233 * 0.45737 * 21 20 19 23 23 C 1.50703 * 120.00112 * 179.79357 * 22 21 20 24 24 C 1.38233 * 119.99994 * 359.77184 * 22 21 20 25 25 C 1.38230 * 119.99908 * 90.00064 * 19 18 17 26 26 H 1.08994 * 109.47156 * 295.43539 * 1 2 3 27 27 H 1.09006 * 109.46863 * 55.43310 * 1 2 3 28 28 H 1.08998 * 109.47033 * 175.43241 * 1 2 3 29 29 H 1.09002 * 109.46653 * 119.99712 * 2 1 3 30 30 H 1.08998 * 109.47459 * 240.00008 * 2 1 3 31 31 H 0.96994 * 120.00275 * 180.02562 * 8 7 5 32 32 H 1.00900 * 110.99953 * 279.93788 * 13 3 2 33 33 H 1.09005 * 109.46938 * 64.95195 * 16 14 13 34 34 H 1.09000 * 109.47328 * 184.95524 * 16 14 13 35 35 H 1.09005 * 109.47295 * 304.95684 * 16 14 13 36 36 H 1.09004 * 109.47002 * 54.99671 * 17 14 13 37 37 H 1.08997 * 109.47225 * 174.99877 * 17 14 13 38 38 H 1.08997 * 109.47621 * 299.99996 * 18 17 14 39 39 H 1.08997 * 109.47332 * 59.99955 * 18 17 14 40 40 H 1.07999 * 119.99693 * 359.97438 * 20 19 18 41 41 H 1.08010 * 119.99788 * 180.25102 * 21 20 19 42 42 H 1.09002 * 109.47237 * 269.98036 * 23 22 21 43 43 H 1.09000 * 109.46755 * 29.97836 * 23 22 21 44 44 H 1.09000 * 109.47185 * 149.97711 * 23 22 21 45 45 H 1.08004 * 120.00029 * 180.02562 * 24 22 21 46 46 H 1.08005 * 120.00450 * 359.97438 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6057 1.9814 0.8421 5 6 3.5420 1.4443 0.1232 6 1 4.1470 1.8890 -0.6531 7 6 4.1437 0.8782 1.2271 8 7 3.4071 0.3371 2.1727 9 14 6.0055 0.8799 1.3796 10 1 6.5010 2.2798 1.3792 11 1 6.3988 0.2164 2.6486 12 1 6.5967 0.1452 0.2324 13 7 1.6509 2.0994 -1.2550 14 6 1.5949 3.5580 -1.0903 15 1 2.3718 3.8753 -0.3946 16 6 0.2240 3.9570 -0.5404 17 6 1.8170 4.2332 -2.4452 18 6 3.2349 3.9355 -2.9370 19 6 3.4535 4.6000 -4.2719 20 6 3.1602 3.9197 -5.4389 21 6 3.3566 4.5308 -6.6631 22 6 3.8552 5.8188 -6.7207 23 6 4.0737 6.4833 -8.0555 24 6 4.1530 6.4974 -5.5538 25 6 3.9525 5.8878 -4.3294 26 1 -0.3633 0.4413 0.9280 27 1 -0.3633 0.5831 -0.8463 28 1 -0.3633 -1.0244 -0.0818 29 1 1.8933 -0.5138 0.8901 30 1 1.8934 -0.5138 -0.8899 31 1 3.8304 -0.0607 2.9494 32 1 2.2751 1.8440 -2.0055 33 1 0.1018 3.5479 0.4626 34 1 0.1506 5.0438 -0.5009 35 1 -0.5570 3.5635 -1.1910 36 1 1.0945 3.8490 -3.1654 37 1 1.6876 5.3104 -2.3400 38 1 3.9574 4.3196 -2.2169 39 1 3.3643 2.8584 -3.0422 40 1 2.7748 2.9118 -5.3941 41 1 3.1236 4.0007 -7.5749 42 1 5.0841 6.2718 -8.4056 43 1 3.3517 6.0982 -8.7755 44 1 3.9434 7.5604 -7.9508 45 1 4.5422 7.5039 -5.5987 46 1 4.1854 6.4180 -3.4177 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000136960282.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:08 Heat of formation + Delta-G solvation = -10.743743 kcal Electronic energy + Delta-G solvation = -21319.475052 eV Core-core repulsion = 18400.368494 eV Total energy + Delta-G solvation = -2919.106558 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.45848 -37.22696 -34.64788 -33.12636 -31.51998 -30.86648 -29.99202 -28.86356 -26.37937 -25.79663 -23.10756 -22.66635 -22.55728 -20.50653 -19.56160 -19.39194 -16.65717 -15.96893 -15.60701 -15.07084 -14.96103 -14.50512 -14.07115 -13.81493 -13.45425 -13.38439 -13.03089 -12.88655 -12.70253 -12.39950 -12.22858 -11.94132 -11.81256 -11.41140 -11.29178 -11.15985 -11.05145 -11.00572 -10.87638 -10.73780 -10.54639 -10.44679 -10.06264 -9.98209 -9.54462 -9.38026 -8.99353 -8.87001 -8.37297 -8.33064 -7.18640 -5.96698 -4.09769 1.39592 1.45798 3.28614 3.34054 3.36447 3.79765 4.40924 4.79669 4.81683 4.99378 5.07380 5.17624 5.25261 5.33932 5.43229 5.49316 5.54157 5.60278 5.62875 5.73495 5.75686 6.02753 6.09137 6.17158 6.23080 6.26700 6.29422 6.42516 6.46175 6.53569 6.56077 6.60379 6.60910 6.75380 6.78539 6.83979 6.96498 7.09244 7.18539 7.22460 7.50249 7.64934 7.81354 8.13944 8.21927 8.39649 8.74148 9.04200 9.57842 11.02986 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.017435 B = 0.004251 C = 0.003750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.579546 B = 6584.398735 C = 7465.263453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.106 4.106 3 C 0.216 3.784 4 H 0.033 0.967 5 C -0.544 4.544 6 H 0.052 0.948 7 C 0.068 3.932 8 N -0.885 5.885 9 Si 0.885 3.115 10 H -0.279 1.279 11 H -0.287 1.287 12 H -0.277 1.277 13 N -0.685 5.685 14 C 0.086 3.914 15 H 0.047 0.953 16 C -0.134 4.134 17 C -0.108 4.108 18 C -0.086 4.086 19 C -0.072 4.072 20 C -0.113 4.113 21 C -0.120 4.120 22 C -0.102 4.102 23 C -0.111 4.111 24 C -0.121 4.121 25 C -0.116 4.116 26 H 0.034 0.966 27 H 0.050 0.950 28 H 0.023 0.977 29 H 0.089 0.911 30 H 0.028 0.972 31 H 0.261 0.739 32 H 0.326 0.674 33 H 0.052 0.948 34 H 0.041 0.959 35 H 0.052 0.948 36 H 0.064 0.936 37 H 0.057 0.943 38 H 0.072 0.928 39 H 0.078 0.922 40 H 0.123 0.877 41 H 0.118 0.882 42 H 0.066 0.934 43 H 0.063 0.937 44 H 0.063 0.937 45 H 0.117 0.883 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.257 9.963 -14.400 17.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.145 4.145 3 C 0.108 3.892 4 H 0.051 0.949 5 C -0.583 4.583 6 H 0.071 0.929 7 C -0.135 4.135 8 N -0.524 5.524 9 Si 0.714 3.286 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.203 1.203 13 N -0.317 5.317 14 C -0.025 4.025 15 H 0.065 0.935 16 C -0.192 4.192 17 C -0.146 4.146 18 C -0.124 4.124 19 C -0.072 4.072 20 C -0.131 4.131 21 C -0.138 4.138 22 C -0.102 4.102 23 C -0.168 4.168 24 C -0.139 4.139 25 C -0.134 4.134 26 H 0.054 0.946 27 H 0.069 0.931 28 H 0.042 0.958 29 H 0.107 0.893 30 H 0.047 0.953 31 H 0.071 0.929 32 H 0.144 0.856 33 H 0.071 0.929 34 H 0.060 0.940 35 H 0.071 0.929 36 H 0.083 0.917 37 H 0.076 0.924 38 H 0.090 0.910 39 H 0.096 0.904 40 H 0.141 0.859 41 H 0.136 0.864 42 H 0.085 0.915 43 H 0.082 0.918 44 H 0.082 0.918 45 H 0.135 0.865 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -1.928 9.780 -14.101 17.269 hybrid contribution 2.118 0.146 0.282 2.142 sum 0.190 9.926 -13.819 17.016 Atomic orbital electron populations 1.21710 0.99073 0.98354 1.00369 1.21493 0.92072 0.99431 1.01499 1.19144 0.92530 0.91094 0.86475 0.94948 1.21855 0.92874 1.38074 1.05480 0.92935 1.24919 0.97693 0.95078 0.95761 1.69865 1.34818 1.38282 1.09405 0.86769 0.86364 0.78163 0.77354 1.20445 1.21275 1.20312 1.60987 1.56175 1.05001 1.09509 1.21350 0.96459 0.90100 0.94558 0.93509 1.21752 0.97501 0.98730 1.01181 1.21710 0.95262 0.99942 0.97644 1.20722 0.98140 1.00894 0.92599 1.20052 0.97328 0.94261 0.95595 1.21108 1.00008 1.00089 0.91902 1.20995 1.00390 0.94702 0.97705 1.19853 1.00208 0.94885 0.95251 1.20752 1.01899 1.00193 0.93953 1.20974 1.01081 0.99704 0.92138 1.21070 0.99780 0.94944 0.97629 0.94633 0.93080 0.95809 0.89301 0.95294 0.92893 0.85598 0.92870 0.94006 0.92872 0.91719 0.92386 0.90959 0.90358 0.85886 0.86418 0.91502 0.91787 0.91836 0.86505 0.86195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 9.85 37.16 0.37 -2.49 16 2 C -0.11 -2.54 5.45 -26.73 -0.15 -2.69 16 3 C 0.22 5.23 1.79 -68.86 -0.12 5.11 16 4 H 0.03 0.88 7.18 -51.92 -0.37 0.51 16 5 C -0.54 -14.38 8.22 -34.44 -0.28 -14.66 16 6 H 0.05 1.37 7.76 -52.49 -0.41 0.96 16 7 C 0.07 1.84 5.29 -17.82 -0.09 1.75 16 8 N -0.89 -24.94 11.29 55.43 0.63 -24.31 16 9 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 13 N -0.69 -13.92 5.43 -100.95 -0.55 -14.47 16 14 C 0.09 1.56 2.45 -67.71 -0.17 1.39 16 15 H 0.05 0.97 7.60 -51.93 -0.39 0.58 16 16 C -0.13 -2.25 9.38 37.16 0.35 -1.90 16 17 C -0.11 -1.62 4.79 -26.73 -0.13 -1.75 16 18 C -0.09 -1.29 5.18 -27.88 -0.14 -1.43 16 19 C -0.07 -0.99 5.13 -104.62 -0.54 -1.53 16 20 C -0.11 -1.46 9.70 -39.59 -0.38 -1.84 16 21 C -0.12 -1.39 9.70 -39.59 -0.38 -1.78 16 22 C -0.10 -1.13 5.88 -104.62 -0.62 -1.75 16 23 C -0.11 -0.91 10.01 36.01 0.36 -0.55 16 24 C -0.12 -1.39 9.70 -39.58 -0.38 -1.78 16 25 C -0.12 -1.48 9.70 -39.58 -0.38 -1.87 16 26 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.05 1.02 7.63 -51.93 -0.40 0.62 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.09 2.38 5.95 -51.93 -0.31 2.07 16 30 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.26 7.07 8.31 -40.82 -0.34 6.74 16 32 H 0.33 6.54 6.18 -39.29 -0.24 6.30 16 33 H 0.05 0.98 7.50 -51.93 -0.39 0.59 16 34 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.07 1.14 8.09 -51.93 -0.42 0.72 16 39 H 0.08 1.25 6.37 -51.93 -0.33 0.92 16 40 H 0.12 1.49 8.06 -52.49 -0.42 1.06 16 41 H 0.12 1.12 8.06 -52.48 -0.42 0.70 16 42 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.06 0.46 8.09 -51.93 -0.42 0.04 16 44 H 0.06 0.46 8.09 -51.93 -0.42 0.04 16 45 H 0.12 1.10 8.06 -52.48 -0.42 0.67 16 46 H 0.12 1.40 8.06 -52.48 -0.42 0.98 16 LS Contribution 365.91 15.07 5.51 5.51 Total: -1.00 -27.60 365.91 -10.44 -38.04 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: -8.31 Total: 6.94 kcal Atomic # 6 Polarization: -25.07 SS G_CDS: -2.70 Total: -27.76 kcal Atomic # 7 Polarization: -38.86 SS G_CDS: 0.08 Total: -38.78 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -27.60 -10.44 -38.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000136960282.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.293 kcal (2) G-P(sol) polarization free energy of solvation -27.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds